Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Forward (+)

24359417 .. 24363605

Gene Structure 4189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG240400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCTGGACGGCTTAGACGAAGAAGGGTGCGTGGAAGAGGCCGGCCATGTCGCCGAGAAGAAGCGCCGGCTAAGCGTTGAGCAAGTGAAGGCCTTGGAGAAGAATTTCGAGGTGGAGAACAAGCTTGAGCCAGAGAGAAAAGTGAAGCTTGCCCAAGAGCTTGGTCTTCAACCAAGACAAGTTGCGGTGTGGTTCCAAAACCGCCGAGCTCGTTGGAAAACTAAGCAATTGGAACGCGACTACGGCGTTCTCAAGGCCAACTATGACTCTCTCAAGATCAGCTATGATTCTCTCCAACATGACAATCAAGCTCTTCACAAAGAGATAAAGGAATTGAAAGCGAAGGTCCAAGAAGAGAACACAGAGAGCAATCACTCAGTGAAAGAGGAGCAAATGGTTCTGGCAAAAGAGTCCAGTTACAAAGTGGTAATGGAGCAGAGCAAGCCACAATCTCCTGATACGTCAGGTCCAGTTTCAGAGTCCAAAGAGCTAAACTTTGAGAGCTTCAACAATACCAACTCCAATGGAGCAGTGGGAGTAGAAGTGTCATTGTTCCCTGACTTCAAAGACGGCTCATCGGACAGTGACTCAAGCGCAATCCTAAACGAGGATCATAACAGTCCCAACGGGACTATAAACCACCACCACCAGCTCATGTCAGCCTCCAATTCACTCAAATTCAACTGCTCTGCCTCATCGTCCTCACCTTCCTCGTCATCAATGAATTGCTTCCAGTTCCAGAAGAGTAGTTATCAGCCTCAGTTTGTGAAGATAGAGGAGCACAATTTCTTTAGTAGTGAGGAGGCTTGTAACTTCTTTTCAGATGAGCAAGCTCCCTCACTTCAGTGGTACTGCCCTGATCAATGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

290

Amino Acids

32.94

Weight (kDa)

5.16

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	20 - 73	5.8e-17	Homeodomain
HALZ	PF02183	75 - 117	1.5e-19	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	185, 202
AclWI	GGATC	1 cut(s)	618
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	103, 677
AcuI	CTGAAG	1 cut(s)	827
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	5 cut(s)	170, 337, 508, 565, 682
AleI	CACNNNNGTG	1 cut(s)	844
Alw21I	GWGCWC	2 cut(s)	211, 783
AlwI	GGATC	1 cut(s)	618
AoxI	GGCC	4 cut(s)	39, 43, 90, 255
ApoI	RAATTY	2 cut(s)	103, 677
Asp700I	GAANNNNTTC	2 cut(s)	104, 728
AspLEI	GCGC	2 cut(s)	66, 596
AspS9I	GGNCC	2 cut(s)	346, 467
AsuHPI	GGTGA	1 cut(s)	696
AvaII	GGWCC	2 cut(s)	346, 467
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	2 cut(s)	211, 783
BceAI	ACGGC	3 cut(s)	25, 259, 586
BclI	TGATCA	1 cut(s)	859
BfoI	RGCGCY	1 cut(s)	67
BlpI	GCTNAGC	1 cut(s)	71
Bme18I	GGWCC	2 cut(s)	346, 467
BmgT120I	GGNCC	2 cut(s)	346, 467
BmiI	GGNNCC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	4 cut(s)	146, 236, 257, 574
BsaJI	CCNNGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse118I	RCCGGY	2 cut(s)	41, 66
Bse1I	ACTGG	3 cut(s)	414, 470, 733
BseDI	CCNNGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	2 cut(s)	390, 773
BseNI	ACTGG	3 cut(s)	414, 470, 733
BseRI	GAGGAG	3 cut(s)	401, 791, 815
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	41, 45, 92, 257
BsiHKAI	GWGCWC	2 cut(s)	211, 783
BsiSI	CCGG	2 cut(s)	42, 67
BslFI	GGGAC	2 cut(s)	606, 643
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmFI	GGGAC	2 cut(s)	606, 643
BsnI	GGCC	4 cut(s)	41, 45, 92, 257
Bsp1286I	GDGCHC	2 cut(s)	211, 783
Bsp143I	GATC	3 cut(s)	276, 610, 859
Bsp1720I	GCTNAGC	1 cut(s)	71
BspACI	CCGC	2 cut(s)	185, 202
BspANI	GGCC	4 cut(s)	41, 45, 92, 257
BspCNI	CTCAG	2 cut(s)	389, 772
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	618
BspQI	GCTCTTC	1 cut(s)	318
BsrFI	RCCGGY	2 cut(s)	41, 66
BsrI	ACTGG	3 cut(s)	414, 470, 733
BssAI	RCCGGY	2 cut(s)	41, 66
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	3 cut(s)	276, 610, 859
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	584, 620
Bst6I	CTCTTC	4 cut(s)	30, 318, 348, 737
BstC8I	GCNNGC	5 cut(s)	43, 68, 150, 443, 831
BstDEI	CTNAG	5 cut(s)	13, 71, 222, 376, 759
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	2 cut(s)	66, 596
BstKTI	GATC	3 cut(s)	279, 613, 862
BstMBI	GATC	3 cut(s)	276, 610, 859
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 243, 442
BstUI	CGCG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	158
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	41, 45, 92, 257
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	4 cut(s)	384, 537, 589, 851
Cac8I	GCNNGC	5 cut(s)	43, 68, 150, 443, 831
CfoI	GCGC	2 cut(s)	66, 596
Cfr10I	RCCGGY	2 cut(s)	41, 66
Cfr13I	GGNCC	2 cut(s)	346, 467
Csp6I	GTAC	1 cut(s)	850
CviAII	CATG	3 cut(s)	47, 299, 655
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	5 cut(s)	13, 71, 222, 376, 759
DpnI	GATC	3 cut(s)	278, 612, 861
DpnII	GATC	3 cut(s)	276, 610, 859
DraIII	CACNNNGTG	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	4 cut(s)	30, 318, 348, 737
EarI	CTCTTC	4 cut(s)	30, 318, 348, 737
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	346, 467
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	827
EcoICRI	GAGCTC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	50, 302, 658
FaiI	YATR	7 cut(s)	48, 264, 285, 300, 615, 635, 656
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	2 cut(s)	606, 643
FatI	CATG	3 cut(s)	46, 298, 654
FbaI	TGATCA	1 cut(s)	859
FriOI	GRGCYC	1 cut(s)	211
FseI	GGCCGGCC	1 cut(s)	45
GlaI	GCGC	2 cut(s)	65, 595
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	4 cut(s)	41, 45, 92, 257
HapII	CCGG	2 cut(s)	42, 67
HhaI	GCGC	2 cut(s)	66, 596
Hin1II	CATG	3 cut(s)	50, 302, 658
Hin6I	GCGC	2 cut(s)	64, 594
HinP1I	GCGC	2 cut(s)	64, 594
HindIII	AAGCTT	2 cut(s)	122, 146
HinfI	GANTC	5 cut(s)	266, 287, 410, 479, 587
HpaII	CCGG	2 cut(s)	42, 67
HphI	GGTGA	1 cut(s)	696
Hpy188I	TCNGA	3 cut(s)	478, 580, 823
Hpy188III	TCNNGA	3 cut(s)	274, 455, 739
HpyAV	CCTTC	4 cut(s)	17, 82, 337, 717
HpyCH4III	ACNGT	2 cut(s)	584, 620
HpyCH4IV	ACGT	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 243, 442
HpyF3I	CTNAG	5 cut(s)	13, 71, 222, 376, 759
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	3 cut(s)	50, 302, 658
HspAI	GCGC	2 cut(s)	64, 594
KroI	GCCGGC	2 cut(s)	41, 66
KroNI	GCCGGC	2 cut(s)	43, 68
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	3 cut(s)	276, 610, 859
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	5 cut(s)	388, 433, 527, 778, 838
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	416, 584, 809
MalI	GATC	3 cut(s)	278, 612, 861
MboI	GATC	3 cut(s)	276, 610, 859
MboII	GAAGA	9 cut(s)	32, 47, 70, 112, 158, 305, 365, 754, 781
MfeI	CAATTG	1 cut(s)	227
MhlI	GDGCHC	2 cut(s)	211, 783
MluCI	AATT	7 cut(s)	103, 227, 332, 667, 677, 724, 784
MlyI	GAGTC	4 cut(s)	260, 419, 488, 581
MmeI	TCCRAC	2 cut(s)	194, 319
MroNI	GCCGGC	2 cut(s)	41, 66
MroXI	GAANNNNTTC	2 cut(s)	104, 728
MslI	CAYNNNNRTG	1 cut(s)	844
MspI	CCGG	2 cut(s)	42, 67
MunI	CAATTG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	72, 243, 442
NaeI	GCCGGC	2 cut(s)	43, 68
NdeII	GATC	3 cut(s)	276, 610, 859
NgoMIV	GCCGGC	2 cut(s)	41, 66
NlaIII	CATG	3 cut(s)	50, 302, 658
NlaIV	GGNNCC	1 cut(s)	194
NmeAIII	GCCGAG	2 cut(s)	79, 230
NmuCI	GTSAC	1 cut(s)	584
OliI	CACNNNNGTG	1 cut(s)	844
PceI	AGGCCT	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdiI	GCCGGC	2 cut(s)	43, 68
PdmI	GAANNNNTTC	2 cut(s)	104, 728
PfeI	GAWTC	1 cut(s)	287
PleI	GAGTC	4 cut(s)	260, 418, 487, 581
PpsI	GAGTC	4 cut(s)	260, 418, 487, 581
Psp124BI	GAGCTC	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	2 cut(s)	346, 467
RigI	GGCCGGCC	1 cut(s)	45
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
RseI	CAYNNNNRTG	1 cut(s)	844
SacI	GAGCTC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	318
Sau3AI	GATC	3 cut(s)	276, 610, 859
Sau96I	GGNCC	2 cut(s)	346, 467
SchI	GAGTC	4 cut(s)	260, 419, 488, 581
SduI	GDGCHC	2 cut(s)	211, 783
SinI	GGWCC	2 cut(s)	346, 467
SmiMI	CAYNNNNRTG	1 cut(s)	844
SmlI	CTYRAG	4 cut(s)	125, 251, 272, 589
SmoI	CTYRAG	4 cut(s)	125, 251, 272, 589
Sse9I	AATT	7 cut(s)	103, 227, 332, 667, 677, 724, 784
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	2 cut(s)	185, 202
SstI	GAGCTC	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	584, 620
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	108
TasI	AATT	7 cut(s)	103, 227, 332, 667, 677, 724, 784
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	4 cut(s)	384, 537, 589, 851
TseFI	GTSAC	1 cut(s)	584
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	1 cut(s)	737
TspRI	CASTG	4 cut(s)	384, 537, 589, 851
VpaK11BI	GGWCC	2 cut(s)	346, 467
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	2 cut(s)	103, 677
XcmI	CCANNNNNNNNNTGG	2 cut(s)	421, 529
XmnI	GAANNNNTTC	2 cut(s)	104, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.