Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Forward (+)

24221587 .. 24224420

Gene Structure 2834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAGAGGCTTGGCAGCTCAGATTCTATGGGTGCTTTGATTTCCATCTGCCCAACAACAACAGATGAACACAGTCCAAGAAACAACCATGTTTACAGCAGAGACTTCCAGTCCATGCTGGACGGCCTAGACGAAGAAGGGTGCGTGGAAGAGGCCGGCCATGTCGCCGAGAAGAAGCGCCGGCTAAGCGTTGAGCAAGTGAAGGCCTTGGAGAAGAATTTCGAGGTGGAGAACAAGCTTGAGCCAGAGAGAAAAGTGAAGCTTGCCCAAGAGCTTGGTCTTCAACCAAGACAAGTTGCGGTGTGGTTCCAAAACCGCCGAGCTCGTTGGAAAACTAAGCAATTGGAACGCGACTACGGCGTTCTCAAGGCCAACTATGACTCTCTCAAGATCAGCTATGATTCTCTCCAACATGACAATCAAGCTCTTCACAAAGAGATAAAGGAATTGAAAGCGAAGGTCCAAGAAGAGAACACAGAGAGCAATCACTCAGTGAAGGAGGAGCAAATGGTTCTGGCAAAAGAGTCCAGTTACAAAGTGGTAATGGAGCAGAGCAAGCCACAATCTCCTGATACGTCAGGTCCAGTTTCAGAGTCCAAAGAGCTAAACTTTGAGAGCTTCAACAATACCAACTCCAATGGAGCAGTGGGAGTAGAAGTGTCATTGTTCCCTGACTTCAAAGACGGCTCATCGGACAGTGACTCAAGCGCAATCCTAAACGAGGATCATAACAGTCCCAACGGGACTATAAACCACCACCACCAGCTCATGTCAGCCTCCAATTCACTCAAATTCAACTGCTCTGCCTCATCGTCCTCGCCTTCCTCGTCGTCAATGAATTGCTTCCAGTTCCAGAAGAGTAGTTATCAGCCTCAGTTTGTGAAGATAGAGGAGCACAATTTCTTTAGTAGTGAGGAGGCTTGTAACTTCTTTTCAGATGAGCAAGCTCCCTCACTTCAGTGGTACTGCCCTGATCAATGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

328

Amino Acids

37.16

Weight (kDa)

5.31

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	58 - 111	7.1e-17	Homeodomain
HALZ	PF02183	113 - 155	1.7e-19	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	351
AciI	CCGC	2 cut(s)	299, 316
AclWI	GGATC	1 cut(s)	732
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	217, 791
AcuI	CTGAAG	1 cut(s)	941
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	1 cut(s)	965
AfiI	CCNNNNNNNGG	1 cut(s)	721
AgsI	TTSAA	5 cut(s)	284, 451, 622, 679, 796
AhdI	GACNNNNNGTC	1 cut(s)	109
AleI	CACNNNNGTG	1 cut(s)	958
Alw21I	GWGCWC	2 cut(s)	325, 897
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	732
AoxI	GGCC	5 cut(s)	124, 153, 157, 204, 369
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	2 cut(s)	217, 791
Asp700I	GAANNNNTTC	2 cut(s)	218, 842
AspLEI	GCGC	2 cut(s)	180, 710
AspS9I	GGNCC	2 cut(s)	460, 581
AvaII	GGWCC	2 cut(s)	460, 581
BanII	GRGCYC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	325, 897
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	3 cut(s)	139, 373, 700
BclI	TGATCA	1 cut(s)	973
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	181
BisI	GCNGC	1 cut(s)	16
BlpI	GCTNAGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	17
Bme18I	GGWCC	2 cut(s)	460, 581
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	460, 581
BmiI	GGNNCC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	4 cut(s)	260, 350, 371, 688
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse118I	RCCGGY	2 cut(s)	155, 180
Bse1I	ACTGG	4 cut(s)	109, 528, 584, 847
Bse8I	GATNNNNATC	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	207
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMII	CTCAG	3 cut(s)	33, 504, 887
BseNI	ACTGG	4 cut(s)	109, 528, 584, 847
BseRI	GAGGAG	3 cut(s)	515, 905, 929
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	5 cut(s)	126, 155, 159, 206, 371
BsiHKAI	GWGCWC	2 cut(s)	325, 897
BsiSI	CCGG	2 cut(s)	156, 181
BslFI	GGGAC	2 cut(s)	720, 757
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	720, 757
BsnI	GGCC	5 cut(s)	126, 155, 159, 206, 371
Bsp1286I	GDGCHC	2 cut(s)	325, 897
Bsp143I	GATC	3 cut(s)	390, 724, 973
Bsp1720I	GCTNAGC	1 cut(s)	185
BspACI	CCGC	2 cut(s)	299, 316
BspANI	GGCC	5 cut(s)	126, 155, 159, 206, 371
BspCNI	CTCAG	3 cut(s)	32, 503, 886
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	732
BspQI	GCTCTTC	1 cut(s)	432
BsrFI	RCCGGY	2 cut(s)	155, 180
BsrI	ACTGG	4 cut(s)	109, 528, 584, 847
BssAI	RCCGGY	2 cut(s)	155, 180
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	390, 724, 973
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	3 cut(s)	74, 698, 734
Bst6I	CTCTTC	4 cut(s)	144, 432, 462, 851
BstC8I	GCNNGC	5 cut(s)	157, 182, 264, 557, 945
BstDEI	CTNAG	5 cut(s)	19, 185, 336, 490, 873
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstFNI	CGCG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	180, 710
BstKTI	GATC	3 cut(s)	393, 727, 976
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	3 cut(s)	390, 724, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 357, 556
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	272
BstXI	CCANNNNNNTGG	1 cut(s)	275
BsuRI	GGCC	5 cut(s)	126, 155, 159, 206, 371
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	4 cut(s)	498, 651, 703, 965
Cac8I	GCNNGC	5 cut(s)	157, 182, 264, 557, 945
CfoI	GCGC	2 cut(s)	180, 710
Cfr10I	RCCGGY	2 cut(s)	155, 180
Cfr13I	GGNCC	2 cut(s)	460, 581
Csp6I	GTAC	1 cut(s)	964
CviAII	CATG	5 cut(s)	89, 115, 161, 413, 769
CviQI	GTAC	1 cut(s)	964
DdeI	CTNAG	5 cut(s)	19, 185, 336, 490, 873
DpnI	GATC	3 cut(s)	392, 726, 975
DpnII	GATC	3 cut(s)	390, 724, 973
DraIII	CACNNNGTG	1 cut(s)	493
DriI	GACNNNNNGTC	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	4 cut(s)	144, 432, 462, 851
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	4 cut(s)	144, 432, 462, 851
Ecl136II	GAGCTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	460, 581
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	941
EcoICRI	GAGCTC	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	5 cut(s)	92, 118, 164, 416, 772
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	2 cut(s)	720, 757
FatI	CATG	5 cut(s)	88, 114, 160, 412, 768
FbaI	TGATCA	1 cut(s)	973
Fnu4HI	GCNGC	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	325
FseI	GGCCGGCC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	2 cut(s)	179, 709
GluI	GCNGC	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	5 cut(s)	126, 155, 159, 206, 371
HapII	CCGG	2 cut(s)	156, 181
HhaI	GCGC	2 cut(s)	180, 710
Hin1II	CATG	5 cut(s)	92, 118, 164, 416, 772
Hin6I	GCGC	2 cut(s)	178, 708
HinP1I	GCGC	2 cut(s)	178, 708
HindIII	AAGCTT	2 cut(s)	236, 260
HinfI	GANTC	6 cut(s)	23, 380, 401, 524, 593, 701
HpaII	CCGG	2 cut(s)	156, 181
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	22, 592, 694, 937
Hpy188III	TCNNGA	3 cut(s)	388, 569, 853
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	832
HpyAV	CCTTC	5 cut(s)	131, 196, 451, 490, 831
HpyCH4III	ACNGT	3 cut(s)	74, 698, 734
HpyCH4IV	ACGT	1 cut(s)	575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 357, 556
HpyF3I	CTNAG	5 cut(s)	19, 185, 336, 490, 873
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	5 cut(s)	92, 118, 164, 416, 772
HspAI	GCGC	2 cut(s)	178, 708
KroI	GCCGGC	2 cut(s)	155, 180
KroNI	GCCGGC	2 cut(s)	157, 182
Ksp22I	TGATCA	1 cut(s)	973
Kzo9I	GATC	3 cut(s)	390, 724, 973
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	5 cut(s)	502, 547, 641, 892, 952
Lsp1109I	GCAGC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	575
MaeIII	GTNAC	3 cut(s)	530, 698, 923
MalI	GATC	3 cut(s)	392, 726, 975
MboI	GATC	3 cut(s)	390, 724, 973
MfeI	CAATTG	1 cut(s)	341
MhlI	GDGCHC	2 cut(s)	325, 897
MluCI	AATT	7 cut(s)	217, 341, 446, 781, 791, 838, 898
MlyI	GAGTC	4 cut(s)	374, 533, 602, 695
MmeI	TCCRAC	2 cut(s)	308, 433
MroNI	GCCGGC	2 cut(s)	155, 180
MroXI	GAANNNNTTC	2 cut(s)	218, 842
MslI	CAYNNNNRTG	1 cut(s)	958
MspI	CCGG	2 cut(s)	156, 181
MunI	CAATTG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	3 cut(s)	186, 357, 556
NaeI	GCCGGC	2 cut(s)	157, 182
NdeII	GATC	3 cut(s)	390, 724, 973
NgoMIV	GCCGGC	2 cut(s)	155, 180
NlaIII	CATG	5 cut(s)	92, 118, 164, 416, 772
NlaIV	GGNNCC	1 cut(s)	308
NmeAIII	GCCGAG	2 cut(s)	193, 344
NmuCI	GTSAC	1 cut(s)	698
OliI	CACNNNNGTG	1 cut(s)	958
PceI	AGGCCT	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 824
PdiI	GCCGGC	2 cut(s)	157, 182
PdmI	GAANNNNTTC	2 cut(s)	218, 842
PfeI	GAWTC	2 cut(s)	23, 401
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	4 cut(s)	374, 532, 601, 695
PpsI	GAGTC	4 cut(s)	374, 532, 601, 695
Psp124BI	GAGCTC	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	2 cut(s)	460, 581
RigI	GGCCGGCC	1 cut(s)	159
RsaI	GTAC	1 cut(s)	965
RsaNI	GTAC	1 cut(s)	964
RseI	CAYNNNNRTG	1 cut(s)	958
SacI	GAGCTC	1 cut(s)	325
SapI	GCTCTTC	1 cut(s)	432
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	3 cut(s)	390, 724, 973
Sau96I	GGNCC	2 cut(s)	460, 581
SchI	GAGTC	4 cut(s)	374, 533, 602, 695
SduI	GDGCHC	2 cut(s)	325, 897
SinI	GGWCC	2 cut(s)	460, 581
SmiMI	CAYNNNNRTG	1 cut(s)	958
SmlI	CTYRAG	4 cut(s)	239, 365, 386, 703
SmoI	CTYRAG	4 cut(s)	239, 365, 386, 703
Sse9I	AATT	7 cut(s)	217, 341, 446, 781, 791, 838, 898
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	2 cut(s)	299, 316
SspMI	CTAG	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	325
StuI	AGGCCT	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	74, 698, 734
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	1 cut(s)	222
TasI	AATT	7 cut(s)	217, 341, 446, 781, 791, 838, 898
TfiI	GAWTC	2 cut(s)	23, 401
TscAI	CASTG	4 cut(s)	498, 651, 703, 965
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	3 cut(s)	17, 81, 851
TspRI	CASTG	4 cut(s)	498, 651, 703, 965
VpaK11BI	GGWCC	2 cut(s)	460, 581
XagI	CCTNNNNNAGG	1 cut(s)	719
XapI	RAATTY	2 cut(s)	217, 791
XcmI	CCANNNNNNNNNTGG	2 cut(s)	535, 643
XmnI	GAANNNNTTC	2 cut(s)	218, 842
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.