Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Reverse (-)

20066290 .. 20068975

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G193400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAAGAGGCTTGGAAGCTCAGATTCATTGGGTGCTATGATTTCCATCTGCCCATCAACAGCAGAGGAACAGAGTCCAAGAAACAACCATGTTTACCGGAGAGATTTCCAGTCCATGTTGGATGGCTTAGATGAAGAAGGGTGCGTGGAAGAGGGTGGCCATGTTTCCGAGAAGAAGAGAAGATTAAGCGTTGAACAAGTGAAGGCCTTGGAGAAAAATTTCGAGGTGGAGAACAAGCTTGAACCAGAAAGGAAAGTGAAGCTTGCCCAAGAACTTGGCCTCCAGCCAAGACAAGTTGCTGTGTGGTTTCAAAACCGCCGTGCTCGTTGGAAGACCAAGCAATTGGAACGTGACTTTGGCGTTCTCAAGGCCAATTATGACTCTCTCAAGCTCAATTATGATAACCTCCAACATGAGAATGAAGCTCTTGTGAAGGAGATAAAGCAATTGAAATCAAAGTTGCAAGAGGAAAACACAGAGAGCAATAATCTGTCGGTGAAAGAAGAGCAAATGGTTGCAAAAGATCAATCCAATTACAAAGTGGTTGATCATGAGCTGAGCAAATCCCCACCACCACCACCTCTTGGTTCCTCTGTTCCAGCAACAGAGTCCAAAGAGCTCAACTTTGAGAGCTTCAACAACACCAACAATGGAGCAGTGGGCTTAGAAGCTGTCTCATTGTTCCCAGATTTCAAAGACGGGTCATCAGACAGTGACTCAAGTGCAATCTTGAACGAAGACAACAGTCCAAACTTGACCATTTCTTCATCTGGGATGCTCCAAAACCACCAGCTCATGAAGTCTCCAGCTTCCACTTCACTCAAATTCAACTGCTGCTCCTCCTCCTCACCTTCCTCATCATCCATGAATTGCTTCCAGTTCCAGAAGACCTATCATCCTCAGTTTGTGAAGATAGAGGAGCACAATTTCTTCAGCAGTGAGGAGGCTTGCAGCTTCTTCTCTGATGAGCAAGCACCTACACTTCAGTGGTGCTGCCCTGATCAATGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

338

Amino Acids

38.05

Weight (kDa)

5.21

Isoelectric Point (pI)

66.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	584
AciI	CCGC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	217, 824
AcuI	CTGAAG	2 cut(s)	916, 968
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	8 cut(s)	194, 242, 311, 451, 637, 694, 733, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AleI	CACNNNNGTG	1 cut(s)	985
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
Alw21I	GWGCWC	3 cut(s)	325, 621, 924
Alw26I	GTCTC	2 cut(s)	679, 807
AoxI	GGCC	4 cut(s)	157, 204, 277, 369
ApeKI	GCWGC	3 cut(s)	834, 951, 993
ApoI	RAATTY	2 cut(s)	217, 824
Asp700I	GAANNNNTTC	2 cut(s)	218, 872
AsuHPI	GGTGA	2 cut(s)	508, 840
BalI	TGGCCA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	3 cut(s)	338, 744, 893
Bbv12I	GWGCWC	3 cut(s)	325, 621, 924
BbvI	GCAGC	3 cut(s)	821, 963, 980
BccI	CCATC	3 cut(s)	53, 61, 116
BceAI	ACGGC	1 cut(s)	303
BclI	TGATCA	2 cut(s)	547, 1000
BcoDI	GTCTC	2 cut(s)	679, 807
BisI	GCNGC	3 cut(s)	835, 952, 994
BlpI	GCTNAGC	1 cut(s)	557
BlsI	GCNGC	3 cut(s)	836, 953, 995
BmiI	GGNNCC	1 cut(s)	589
BmsI	GCATC	1 cut(s)	765
BoxI	GACNNNNGTC	1 cut(s)	744
BpiI	GAAGAC	3 cut(s)	338, 744, 893
BpmI	CTGGAG	2 cut(s)	266, 789
Bpu1102I	GCTNAGC	1 cut(s)	557
BpuEI	CTTGAG	3 cut(s)	350, 371, 703
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 821, 851
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse1I	ACTGG	2 cut(s)	109, 877
Bse8I	GATNNNNATC	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	4 cut(s)	127, 780, 860, 895
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	3 cut(s)	33, 548, 914
BseNI	ACTGG	2 cut(s)	109, 877
BseRI	GAGGAG	5 cut(s)	829, 832, 835, 932, 956
BseXI	GCAGC	3 cut(s)	821, 963, 980
BshFI	GGCC	4 cut(s)	159, 206, 279, 371
BsiHKAI	GWGCWC	3 cut(s)	325, 621, 924
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	2 cut(s)	679, 807
BsnI	GGCC	4 cut(s)	159, 206, 279, 371
Bsp1286I	GDGCHC	3 cut(s)	325, 621, 924
Bsp143I	GATC	3 cut(s)	523, 547, 1000
Bsp1720I	GCTNAGC	1 cut(s)	557
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	4 cut(s)	159, 206, 279, 371
BspCNI	CTCAG	3 cut(s)	32, 549, 913
BspHI	TCATGA	2 cut(s)	550, 795
BspLI	GGNNCC	1 cut(s)	589
BspQI	GCTCTTC	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	109, 877
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	523, 547, 1000
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	713, 746
Bst6I	CTCTTC	3 cut(s)	144, 170, 498
BstC8I	GCNNGC	3 cut(s)	264, 949, 972
BstDEI	CTNAG	5 cut(s)	19, 127, 557, 664, 900
BstF5I	GGATG	4 cut(s)	127, 780, 860, 895
BstKTI	GATC	3 cut(s)	526, 550, 1003
BstMAI	GTCTC	2 cut(s)	679, 807
BstMBI	GATC	3 cut(s)	523, 547, 1000
BstPAI	GACNNNNGTC	1 cut(s)	744
BstV1I	GCAGC	3 cut(s)	821, 963, 980
BstV2I	GAAGAC	3 cut(s)	338, 744, 893
BstXI	CCANNNNNNTGG	2 cut(s)	275, 343
BsuRI	GGCC	4 cut(s)	159, 206, 279, 371
BtsCI	GGATG	4 cut(s)	127, 780, 860, 895
BtsI	GCAGTG	2 cut(s)	663, 943
BtsIMutI	CAGTG	4 cut(s)	663, 718, 943, 992
Cac8I	GCNNGC	3 cut(s)	264, 949, 972
CciI	TCATGA	2 cut(s)	550, 795
CviAII	CATG	7 cut(s)	89, 115, 161, 413, 551, 796, 865
DdeI	CTNAG	5 cut(s)	19, 127, 557, 664, 900
DpnI	GATC	3 cut(s)	525, 549, 1002
DpnII	GATC	3 cut(s)	523, 547, 1000
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	3 cut(s)	144, 170, 498
EarI	CTCTTC	3 cut(s)	144, 170, 498
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	2 cut(s)	916, 968
EcoICRI	GAGCTC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	7 cut(s)	92, 118, 164, 416, 554, 799, 868
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	7 cut(s)	88, 114, 160, 412, 550, 795, 864
FbaI	TGATCA	2 cut(s)	547, 1000
Fnu4HI	GCNGC	3 cut(s)	835, 952, 994
FokI	GGATG	4 cut(s)	134, 787, 847, 882
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	3 cut(s)	835, 952, 994
GluI	GCNGC	3 cut(s)	835, 952, 994
GsuI	CTGGAG	2 cut(s)	266, 789
HaeIII	GGCC	4 cut(s)	159, 206, 279, 371
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	7 cut(s)	92, 118, 164, 416, 554, 799, 868
HindIII	AAGCTT	2 cut(s)	236, 260
HinfI	GANTC	5 cut(s)	23, 73, 380, 608, 716
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	2 cut(s)	508, 840
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	22, 169, 709, 964
Hpy188III	TCNNGA	4 cut(s)	551, 730, 796, 883
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	4 cut(s)	131, 196, 427, 861
HpyCH4III	ACNGT	2 cut(s)	713, 746
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	4 cut(s)	463, 518, 725, 951
HpyF3I	CTNAG	5 cut(s)	19, 127, 557, 664, 900
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	7 cut(s)	92, 118, 164, 416, 554, 799, 868
Ksp22I	TGATCA	2 cut(s)	547, 1000
Kzo9I	GATC	3 cut(s)	523, 547, 1000
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	4 cut(s)	653, 783, 842, 919
Lsp1109I	GCAGC	3 cut(s)	821, 963, 980
LweI	GCATC	1 cut(s)	765
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	350, 713
MalI	GATC	3 cut(s)	525, 549, 1002
MboI	GATC	3 cut(s)	523, 547, 1000
MfeI	CAATTG	2 cut(s)	341, 446
MhlI	GDGCHC	3 cut(s)	325, 621, 924
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	9 cut(s)	217, 341, 373, 394, 446, 532, 824, 868, 925
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	4 cut(s)	82, 374, 617, 710
MmeI	TCCRAC	3 cut(s)	99, 308, 433
Mox20I	TGGCCA	1 cut(s)	159
MroXI	GAANNNNTTC	2 cut(s)	218, 872
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	2 cut(s)	417, 985
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	1 cut(s)	97
MunI	CAATTG	2 cut(s)	341, 446
NdeII	GATC	3 cut(s)	523, 547, 1000
NlaIII	CATG	7 cut(s)	92, 118, 164, 416, 554, 799, 868
NlaIV	GGNNCC	1 cut(s)	589
NmuCI	GTSAC	2 cut(s)	350, 713
OliI	CACNNNNGTG	1 cut(s)	985
PagI	TCATGA	2 cut(s)	550, 795
PceI	AGGCCT	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	498
PdmI	GAANNNNTTC	2 cut(s)	218, 872
PfeI	GAWTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	584
PkrI	GCNGC	3 cut(s)	836, 953, 995
PleI	GAGTC	4 cut(s)	81, 374, 616, 710
PpsI	GAGTC	4 cut(s)	81, 374, 616, 710
PshAI	GACNNNNGTC	1 cut(s)	744
Psp124BI	GAGCTC	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	589
RseI	CAYNNNNRTG	2 cut(s)	417, 985
SacI	GAGCTC	1 cut(s)	621
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	3 cut(s)	835, 952, 994
Sau3AI	GATC	3 cut(s)	523, 547, 1000
SchI	GAGTC	4 cut(s)	82, 374, 617, 710
SduI	GDGCHC	3 cut(s)	325, 621, 924
SfaNI	GCATC	1 cut(s)	765
SmiMI	CAYNNNNRTG	2 cut(s)	417, 985
SmlI	CTYRAG	3 cut(s)	365, 386, 718
SmoI	CTYRAG	3 cut(s)	365, 386, 718
Sse9I	AATT	9 cut(s)	217, 341, 373, 394, 446, 532, 824, 868, 925
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	316
SstI	GAGCTC	1 cut(s)	621
StuI	AGGCCT	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	713, 746
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	222
TasI	AATT	9 cut(s)	217, 341, 373, 394, 446, 532, 824, 868, 925
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	4 cut(s)	663, 718, 943, 992
TseFI	GTSAC	2 cut(s)	350, 713
TseI	GCWGC	3 cut(s)	834, 951, 993
Tsp45I	GTSAC	2 cut(s)	350, 713
TspDTI	ATGAA	7 cut(s)	15, 17, 147, 435, 756, 812, 881
TspRI	CASTG	4 cut(s)	663, 718, 943, 992
Van91I	CCANNNNNTGG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	217, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmnI	GAANNNNTTC	2 cut(s)	218, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.