Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Reverse (-)

6515338 .. 6517088

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATTTCCATCTGCCCAATAACAGATGAACAGAGTCCAAGAAACAACCATGTTTACAGCAGGGAATTCCAGTCCATGTTGGAAGGGTTAGATGAGGACGGTTGTGTGGAAGAGGCCGGCCGTGTTTCCGAGAAGAAGAGAAGATTGAGCGTTGAACAAGTGAAGGCCCTGGAGAAAAACTTCGAGGTGGAGAACAAGCTTGAACCTGAAAGAAAGGTGAAGCTTGCCCAAGAACTTGGCCTCCAACCAAGACAAGTTTCCGTGTGGTTCCAGAACCGCCGTGCTCGTTGGAAAACCAAGCAATTGGAGCGCGATTACGGCGTTCTCAAAGCCAATTACGACTCTCTCAAGTGCAACTACGATATCCTTCAACATGACAATGAAGCCCTTCTCAAAGAGATAAAGCAATTGAAAGCAAAATTCCAAGAGAACACAGAGACCACTAATCCCTCAGTAAAAGAAGAGAAACTCCTGGGGAAAGATCAATCCAGTTACCGGGCGGTTCATGAGGGGAGCCGGTCACCGCCACCACTTCCGGAATCCTCCGTTCCAGAAACCGAATGCAAAGAGCTCAACTTTGAGAGCTTCAACAACACAAGTGGAGTGCTAGAAGCCGTTTCATTGTTCCCGGATTTCAAAGATGGCTCTTCGGACAGTGACTCAAGCGCGATCTTGAACGAAGATAACAGTCCAAACTTGACTGTGTCTTCATCTGGGATTCTCCAAAACCACCAGCTCATCAAGTCTCCGGCTTCCACTTCACTCAAATTCAACTGTTGTTCGTCGTCCTTGCCGTCATCATCGTCAATGAACTGCTTTCCGTTCCAAAAGAGCTATCAGCCTTCCGTGAAGGTGGAGGAGCACAACTTCTTTAGCAGTGAGGAGGCTTGTAGCTTCTTCTCCGATGAGCAAGCACCTTCACTTCAGTGGTACTGTCCTGATCAATGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

318

Amino Acids

36.02

Weight (kDa)

5.09

Isoelectric Point (pI)

67.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	45 - 98	6.6e-17	Homeodomain
HALZ	PF02183	100 - 141	4.3e-17	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	312, 668
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	3 cut(s)	277, 500, 524
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	3 cut(s)	65, 419, 767
AcuI	CTGAAG	1 cut(s)	908
AfaI	GTAC	1 cut(s)	932
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	8 cut(s)	155, 203, 371, 412, 589, 637, 676, 772
AjnI	CCWGG	2 cut(s)	168, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AleI	CACNNNNGTG	1 cut(s)	925
AloI	GAACNNNNNNTCC	2 cut(s)	225, 257
AluBI	AGCT	7 cut(s)	199, 223, 571, 585, 736, 834, 894
AluI	AGCT	7 cut(s)	199, 223, 571, 585, 736, 834, 894
Alw21I	GWGCWC	3 cut(s)	286, 573, 864
Alw26I	GTCTC	2 cut(s)	431, 750
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	4 cut(s)	114, 118, 165, 238
ApoI	RAATTY	3 cut(s)	65, 419, 767
Asp700I	GAANNNNTTC	2 cut(s)	179, 387
AspLEI	GCGC	2 cut(s)	312, 668
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	497, 629
AsuHPI	GGTGA	2 cut(s)	229, 513
BanII	GRGCYC	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	3 cut(s)	286, 573, 864
BccI	CCATC	2 cut(s)	17, 635
BceAI	ACGGC	5 cut(s)	105, 264, 334, 599, 778
BciT130I	CCWGG	2 cut(s)	170, 473
BclI	TGATCA	1 cut(s)	940
BcnI	CCSGG	2 cut(s)	497, 629
BcoDI	GTCTC	2 cut(s)	431, 750
BfaI	CTAG	1 cut(s)	608
Bme1390I	CCNGG	4 cut(s)	170, 473, 497, 629
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	269, 515
BmrFI	CCNGG	4 cut(s)	170, 473, 497, 629
BpiI	GAAGAC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	332, 646
BpuMI	CCSGG	2 cut(s)	497, 629
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	168, 472
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse118I	RCCGGY	2 cut(s)	116, 516
Bse1I	ACTGG	2 cut(s)	70, 489
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	535
BseBI	CCWGG	2 cut(s)	170, 473
BseDI	CCNNGG	2 cut(s)	168, 472
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	70, 489
BseRI	GAGGAG	2 cut(s)	872, 896
BseX3I	CGGCCG	1 cut(s)	118
Bsh1236I	CGCG	2 cut(s)	312, 668
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	116, 120, 167, 240
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	3 cut(s)	286, 573, 864
BsiSI	CCGG	6 cut(s)	117, 496, 517, 536, 629, 749
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	2 cut(s)	431, 750
BsmI	GAATGC	1 cut(s)	566
BsnI	GGCC	4 cut(s)	116, 120, 167, 240
Bso31I	GGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	286, 573, 864
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	481, 669, 940
BspACI	CCGC	3 cut(s)	277, 500, 524
BspANI	GGCC	4 cut(s)	116, 120, 167, 240
BspCNI	CTCAG	1 cut(s)	464
BspEI	TCCGGA	1 cut(s)	535
BspFNI	CGCG	2 cut(s)	312, 668
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	269, 515
BspQI	GCTCTTC	1 cut(s)	652
BspTNI	GGTCTC	1 cut(s)	431
BsrFI	RCCGGY	2 cut(s)	116, 516
BsrI	ACTGG	2 cut(s)	70, 489
BssAI	RCCGGY	2 cut(s)	116, 516
BssECI	CCNNGG	2 cut(s)	168, 472
BssMI	GATC	3 cut(s)	481, 669, 940
Bst2UI	CCWGG	2 cut(s)	170, 473
Bst4CI	ACNGT	6 cut(s)	101, 656, 689, 703, 776, 935
Bst6I	CTCTTC	4 cut(s)	105, 131, 456, 652
BstC8I	GCNNGC	3 cut(s)	118, 225, 912
BstDEI	CTNAG	1 cut(s)	451
BstEII	GGTNACC	1 cut(s)	519
BstFNI	CGCG	2 cut(s)	312, 668
BstHHI	GCGC	2 cut(s)	312, 668
BstKTI	GATC	3 cut(s)	484, 672, 943
BstMAI	GTCTC	2 cut(s)	431, 750
BstMBI	GATC	3 cut(s)	481, 669, 940
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 318
BstNI	CCWGG	2 cut(s)	170, 473
BstPI	GGTNACC	1 cut(s)	519
BstSCI	CCNGG	4 cut(s)	168, 471, 495, 627
BstUI	CGCG	2 cut(s)	312, 668
BstV2I	GAAGAC	1 cut(s)	699
BstXI	CCANNNNNNTGG	2 cut(s)	236, 304
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	4 cut(s)	116, 120, 167, 240
BtsI	GCAGTG	1 cut(s)	883
BtsIMutI	CAGTG	3 cut(s)	661, 883, 932
Cac8I	GCNNGC	3 cut(s)	118, 225, 912
CciI	TCATGA	1 cut(s)	505
CfoI	GCGC	2 cut(s)	312, 668
Cfr10I	RCCGGY	2 cut(s)	116, 516
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	931
CspCI	CAANNNNNGTGG	2 cut(s)	580, 615
CviAII	CATG	4 cut(s)	50, 76, 374, 506
CviQI	GTAC	1 cut(s)	931
DdeI	CTNAG	1 cut(s)	451
DpnI	GATC	3 cut(s)	483, 671, 942
DpnII	GATC	3 cut(s)	481, 669, 940
EaeI	YGGCCR	1 cut(s)	118
EagI	CGGCCG	1 cut(s)	118
Eam1104I	CTCTTC	4 cut(s)	105, 131, 456, 652
EarI	CTCTTC	4 cut(s)	105, 131, 456, 652
Ecl136II	GAGCTC	1 cut(s)	571
EclXI	CGGCCG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	364
Eco52I	CGGCCG	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	908
Eco91I	GGTNACC	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	168, 471
EcoRV	GATATC	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	573
FaeI	CATG	4 cut(s)	53, 79, 377, 509
FaiI	YATR	4 cut(s)	51, 77, 375, 507
FatI	CATG	4 cut(s)	49, 75, 373, 505
FbaI	TGATCA	1 cut(s)	940
FriOI	GRGCYC	1 cut(s)	573
FseI	GGCCGGCC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	2 cut(s)	311, 667
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	4 cut(s)	116, 120, 167, 240
HapII	CCGG	6 cut(s)	117, 496, 517, 536, 629, 749
HhaI	GCGC	2 cut(s)	312, 668
Hin1II	CATG	4 cut(s)	53, 79, 377, 509
Hin6I	GCGC	2 cut(s)	310, 666
HinP1I	GCGC	2 cut(s)	310, 666
HindIII	AAGCTT	2 cut(s)	197, 221
HinfI	GANTC	5 cut(s)	34, 341, 539, 659, 718
HpaII	CCGG	6 cut(s)	117, 496, 517, 536, 629, 749
HphI	GGTGA	2 cut(s)	229, 513
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	130, 652, 904
Hpy188III	TCNNGA	6 cut(s)	271, 506, 536, 551, 673, 938
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	787
HpyAV	CCTTC	7 cut(s)	77, 157, 377, 398, 844, 852, 927
HpyCH4III	ACNGT	6 cut(s)	101, 656, 689, 703, 776, 935
HpyCH4V	TGCA	2 cut(s)	354, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 318
HpyF3I	CTNAG	1 cut(s)	451
Hsp92II	CATG	4 cut(s)	53, 79, 377, 509
HspAI	GCGC	2 cut(s)	310, 666
Kpn2I	TCCGGA	1 cut(s)	535
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	940
Kzo9I	GATC	3 cut(s)	481, 669, 940
LguI	GCTCTTC	1 cut(s)	652
LmnI	GCTCC	3 cut(s)	307, 513, 859
MaeI	CTAG	1 cut(s)	608
MaeIII	GTNAC	3 cut(s)	491, 519, 656
MalI	GATC	3 cut(s)	483, 671, 942
MboI	GATC	3 cut(s)	481, 669, 940
MboII	GAAGA	9 cut(s)	122, 145, 148, 153, 473, 639, 692, 699, 889
MfeI	CAATTG	2 cut(s)	302, 407
MhlI	GDGCHC	3 cut(s)	286, 573, 864
MluCI	AATT	6 cut(s)	65, 302, 334, 407, 419, 767
MlyI	GAGTC	3 cut(s)	43, 335, 653
MmeI	TCCRAC	3 cut(s)	60, 268, 269
MroI	TCCGGA	1 cut(s)	535
MroNI	GCCGGC	1 cut(s)	116
MroXI	GAANNNNTTC	2 cut(s)	179, 387
MslI	CAYNNNNRTG	2 cut(s)	378, 925
MspI	CCGG	6 cut(s)	117, 496, 517, 536, 629, 749
MspR9I	CCNGG	4 cut(s)	170, 473, 497, 629
MunI	CAATTG	2 cut(s)	302, 407
Mva1269I	GAATGC	1 cut(s)	566
MvaI	CCWGG	2 cut(s)	170, 473
MvnI	CGCG	2 cut(s)	312, 668
MwoI	GCNNNNNNNGC	2 cut(s)	307, 318
NaeI	GCCGGC	1 cut(s)	118
NciI	CCSGG	2 cut(s)	497, 629
NdeII	GATC	3 cut(s)	481, 669, 940
NgoMIV	GCCGGC	1 cut(s)	116
NlaIII	CATG	4 cut(s)	53, 79, 377, 509
NlaIV	GGNNCC	2 cut(s)	269, 515
NmuCI	GTSAC	2 cut(s)	519, 656
OliI	CACNNNNGTG	1 cut(s)	925
PagI	TCATGA	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	1 cut(s)	791
PctI	GAATGC	1 cut(s)	566
PdiI	GCCGGC	1 cut(s)	118
PdmI	GAANNNNTTC	2 cut(s)	179, 387
PfeI	GAWTC	2 cut(s)	539, 718
PflFI	GACNNNGTC	1 cut(s)	703
PfoI	TCCNGGA	1 cut(s)	627
PleI	GAGTC	3 cut(s)	42, 335, 653
PpsI	GAGTC	3 cut(s)	42, 335, 653
Psp124BI	GAGCTC	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	168, 471
PspEI	GGTNACC	1 cut(s)	519
PspGI	CCWGG	2 cut(s)	168, 471
PspN4I	GGNNCC	2 cut(s)	269, 515
PspPI	GGNCC	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	703
RigI	GGCCGGCC	1 cut(s)	120
RsaI	GTAC	1 cut(s)	932
RsaNI	GTAC	1 cut(s)	931
RseI	CAYNNNNRTG	2 cut(s)	378, 925
SacI	GAGCTC	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	652
Sau3AI	GATC	3 cut(s)	481, 669, 940
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	3 cut(s)	43, 335, 653
ScrFI	CCNGG	4 cut(s)	170, 473, 497, 629
SduI	GDGCHC	3 cut(s)	286, 573, 864
SmiMI	CAYNNNNRTG	2 cut(s)	378, 925
SmlI	CTYRAG	2 cut(s)	347, 661
SmoI	CTYRAG	2 cut(s)	347, 661
Sse9I	AATT	6 cut(s)	65, 302, 334, 407, 419, 767
SsiI	CCGC	3 cut(s)	277, 500, 524
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	573
StyD4I	CCNGG	4 cut(s)	168, 471, 495, 627
TaaI	ACNGT	6 cut(s)	101, 656, 689, 703, 776, 935
TaqI	TCGA	1 cut(s)	183
TasI	AATT	6 cut(s)	65, 302, 334, 407, 419, 767
TfiI	GAWTC	2 cut(s)	539, 718
TscAI	CASTG	3 cut(s)	661, 883, 932
TseFI	GTSAC	2 cut(s)	519, 656
Tsp45I	GTSAC	2 cut(s)	519, 656
TspDTI	ATGAA	6 cut(s)	42, 396, 494, 609, 699, 824
TspGWI	ACGGA	4 cut(s)	250, 535, 810, 835
TspRI	CASTG	3 cut(s)	661, 883, 932
Tth111I	GACNNNGTC	1 cut(s)	703
XapI	RAATTY	3 cut(s)	65, 419, 767
XmnI	GAANNNNTTC	2 cut(s)	179, 387
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.