AT2G22720

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003861
Physical Location & Seq
Forward (+)
9657339 .. 9660803
3465 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22720.4

Sequence Viewer

Length: 1023 bp
ATGAATCATTCAAGACCGTCTTCCTCTGGCAGTAAAATGAATCATTCAAGACCGGCTACCTCGGGCAGCCAAATGCCAAATTCAAGACCAGCTTCCTCTGGCAGCCAAATGCAGTCGAGAGCTGTCTCAGGCTCAGGGCGACCTGCTTCCTCAGGCAGCCAGATGCAAAATTCAAGACCACAAAATTCAAGACCAGCTTCCGCTGGTAGCCAAATGCAGCAAAGGCCTGCGTCCTCAGGCAGCCAAAGGCCTGCGTCCTCAGGCAGCCAAAGGCCTGCGTCCTCAGGCAGCCAAAGGCCAGGTTCGTCGACAAACCGTCAAGCACCTATGAGGCCACCAGGTTCAGGTTCCACAATGAATGGTCAATCAGCCAACCGGAATGGCCAACTGAATTCCAGATCAGATTCCCGAAGATCAGCTCCTGCTAAAGTGCCAGTGGATCATAGGAAACAGATGAGCAGTAGCAATGGAGTTGGTCCTGGTCGGTCAGCGACCAATGCAAGACCTTTACCTTCTAAGAGTTCATTGGAAAGAAAACCCTCAATCTCGGCGGGAAAGAGTTCTCTTCAAAGCCCTCAGAGACCGTCCTCATCAAGACCAATGTCATCTGATCCTAGGCAACGGGTAGTAGAACAGAGAAAGGTTTCTCGTGACATGGCCACACCCCGAATGATACCTAAACAATCAGCGCCTACCTCGAAACACCAGATGATGAGTAAACCAGCGCTCAAGAGACCTCCCTCGCGTGACATAGATCATGAAAGGAGGCTGTTGAAGAAGAAGAAGCCTGCAAGGTCAGAGGATCAAGAAGCATTCGATATGCTTAGACAGTTATTACCACCCAAGCGGTTTTCTCGGTATGACGATGATGACATAAACATGGAAGCAGGCTTTGAAGATATCCAAAAGGAAGAGAGACGAAGTGCGAGAATCGCAAGGGAGGAAGATGAAAGAGAACTTAAGCTCTTAGAGGAAGAAGAAAGGAGAGAAAGACTGAAAAAGAATCGGAAGCTGAGCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

340

Amino Acids

37.5

Weight (kDa)

11.58

Isoelectric Point (pI)

89.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 462 - 564 5.3e-17 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 308
AccII CGCG 1 cut(s) 745
AciI CCGC 3 cut(s) 201, 551, 847
AclWI GGATC 3 cut(s) 447, 605, 810
AcoI YGGCCR 2 cut(s) 382, 657
AcsI RAATTY 4 cut(s) 79, 169, 184, 391
AfeI AGCGCT 1 cut(s) 726
AfiI CCNNNNNNNGG 1 cut(s) 344
AflII CTTAAG 1 cut(s) 959
AgsI TTSAA 8 cut(s) 12, 48, 84, 174, 189, 569, 775, 896
AhdI GACNNNNNGTC 1 cut(s) 315
AjnI CCWGG 3 cut(s) 298, 337, 478
AluBI AGCT 6 cut(s) 92, 122, 197, 419, 964, 1012
AluI AGCT 6 cut(s) 92, 122, 197, 419, 964, 1012
Alw26I GTCTC 4 cut(s) 130, 574, 727, 910
AlwI GGATC 3 cut(s) 447, 605, 810
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 61
Aor51HI AGCGCT 1 cut(s) 726
AoxI GGCC 7 cut(s) 224, 248, 272, 296, 332, 382, 657
ApeKI GCWGC 7 cut(s) 66, 102, 156, 217, 240, 264, 288
ApoI RAATTY 4 cut(s) 79, 169, 184, 391
Asp700I GAANNNNTTC 2 cut(s) 559, 643
AspA2I CCTAGG 1 cut(s) 614
AspLEI GCGC 2 cut(s) 691, 727
AspS9I GGNCC 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 476
AvrII CCTAGG 1 cut(s) 614
AxyI CCTNAGG 4 cut(s) 151, 235, 259, 283
BalI TGGCCA 2 cut(s) 384, 659
BauI CACGAG 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 7 cut(s) 78, 114, 168, 229, 252, 276, 300
BceAI ACGGC 1 cut(s) 1002
BciT130I CCWGG 3 cut(s) 300, 339, 480
BcoDI GTCTC 4 cut(s) 130, 574, 727, 910
BfaI CTAG 1 cut(s) 615
BfoI RGCGCY 2 cut(s) 692, 728
BfrI CTTAAG 1 cut(s) 959
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 7 cut(s) 67, 103, 157, 218, 241, 265, 289
BlnI CCTAGG 1 cut(s) 614
BlpI GCTNAGC 1 cut(s) 1013
BlsI GCNGC 7 cut(s) 68, 104, 158, 219, 242, 266, 290
Bme1390I CCNGG 3 cut(s) 300, 339, 480
Bme18I GGWCC 1 cut(s) 476
BmeRI GACNNNNNGTC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 3 cut(s) 300, 339, 480
BmsI GCATC 1 cut(s) 153
BoxI GACNNNNGTC 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 1013
BpuEI CTTGAG 1 cut(s) 713
BsaI GGTCTC 2 cut(s) 574, 727
BsaJI CCNNGG 2 cut(s) 60, 614
BsaWI WCCGGW 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 434
Bse21I CCTNAGG 4 cut(s) 151, 235, 259, 283
Bse3DI GCAATG 1 cut(s) 472
BseBI CCWGG 3 cut(s) 300, 339, 480
BseDI CCNNGG 2 cut(s) 60, 614
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 8 cut(s) 141, 147, 165, 249, 273, 297, 590, 1004
BseNI ACTGG 1 cut(s) 434
BseXI GCAGC 7 cut(s) 78, 114, 168, 229, 252, 276, 300
Bsh1236I CGCG 1 cut(s) 745
BshFI GGCC 7 cut(s) 226, 250, 274, 298, 334, 384, 659
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 2 cut(s) 53, 376
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 4 cut(s) 130, 574, 727, 910
BsmBI CGTCTC 1 cut(s) 910
BsmI GAATGC 1 cut(s) 812
BsnI GGCC 7 cut(s) 226, 250, 274, 298, 334, 384, 659
Bso31I GGTCTC 2 cut(s) 574, 727
BsoBI CYCGRG 1 cut(s) 61
Bsp143I GATC 6 cut(s) 398, 413, 439, 610, 754, 802
Bsp1720I GCTNAGC 1 cut(s) 1013
BspACI CCGC 3 cut(s) 201, 551, 847
BspANI GGCC 7 cut(s) 226, 250, 274, 298, 334, 384, 659
BspCNI CTCAG 8 cut(s) 140, 146, 164, 248, 272, 296, 589, 1005
BspFNI CGCG 1 cut(s) 745
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 3 cut(s) 447, 605, 810
BspTI CTTAAG 1 cut(s) 959
BspTNI GGTCTC 2 cut(s) 574, 727
BsrDI GCAATG 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 60, 614
BssMI GATC 6 cut(s) 398, 413, 439, 610, 754, 802
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 1 cut(s) 614
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 3 cut(s) 300, 339, 480
Bst4CI ACNGT 4 cut(s) 18, 317, 585, 831
Bst6I CTCTTC 2 cut(s) 570, 906
BstAFI CTTAAG 1 cut(s) 959
BstC8I GCNNGC 5 cut(s) 228, 252, 276, 789, 889
BstFNI CGCG 1 cut(s) 745
BstH2I RGCGCY 2 cut(s) 692, 728
BstHHI GCGC 2 cut(s) 691, 727
BstKTI GATC 6 cut(s) 401, 416, 442, 613, 757, 805
BstMAI GTCTC 4 cut(s) 130, 574, 727, 910
BstMBI GATC 6 cut(s) 398, 413, 439, 610, 754, 802
BstMWI GCNNNNNNNGC 3 cut(s) 223, 497, 932
BstNI CCWGG 3 cut(s) 300, 339, 480
BstPAI GACNNNNGTC 1 cut(s) 601
BstSCI CCNGG 3 cut(s) 298, 337, 478
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 7 cut(s) 78, 114, 168, 229, 252, 276, 300
BstV2I GAAGAC 1 cut(s) 12
Bsu36I CCTNAGG 4 cut(s) 151, 235, 259, 283
BsuRI GGCC 7 cut(s) 226, 250, 274, 298, 334, 384, 659
BtsIMutI CAGTG 1 cut(s) 441
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 5 cut(s) 228, 252, 276, 789, 889
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 757
CfoI GCGC 2 cut(s) 691, 727
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 476
CseI GACGC 3 cut(s) 219, 243, 267
CsiI ACCWGGT 1 cut(s) 337
CviAII CATG 3 cut(s) 655, 758, 880
DpnI GATC 6 cut(s) 400, 415, 441, 612, 756, 804
DpnII GATC 6 cut(s) 398, 413, 439, 610, 754, 802
DriI GACNNNNNGTC 1 cut(s) 315
EaeI YGGCCR 2 cut(s) 382, 657
Eam1104I CTCTTC 2 cut(s) 570, 906
Eam1105I GACNNNNNGTC 1 cut(s) 315
EarI CTCTTC 2 cut(s) 570, 906
Eco130I CCWWGG 1 cut(s) 614
Eco147I AGGCCT 3 cut(s) 226, 250, 274
Eco31I GGTCTC 2 cut(s) 574, 727
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 476
Eco47III AGCGCT 1 cut(s) 726
Eco81I CCTNAGG 4 cut(s) 151, 235, 259, 283
Eco88I CYCGRG 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 3 cut(s) 298, 337, 478
EcoRV GATATC 1 cut(s) 901
EcoT14I CCWWGG 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 614
Esp3I CGTCTC 1 cut(s) 910
FaeI CATG 3 cut(s) 658, 761, 883
FaiI YATR 9 cut(s) 329, 444, 656, 752, 759, 821, 861, 875, 881
FalI AAGNNNNNCTT 5 cut(s) 36, 76, 108, 181, 213
FatI CATG 3 cut(s) 654, 757, 879
FauI CCCGC 1 cut(s) 544
FblI GTMKAC 1 cut(s) 308
Fnu4HI GCNGC 7 cut(s) 67, 103, 157, 218, 241, 265, 289
Fsp4HI GCNGC 7 cut(s) 67, 103, 157, 218, 241, 265, 289
FspBI CTAG 1 cut(s) 615
GlaI GCGC 2 cut(s) 690, 726
GluI GCNGC 7 cut(s) 67, 103, 157, 218, 241, 265, 289
HaeII RGCGCY 2 cut(s) 692, 728
HaeIII GGCC 7 cut(s) 226, 250, 274, 298, 334, 384, 659
HapII CCGG 2 cut(s) 53, 376
HgaI GACGC 3 cut(s) 219, 243, 267
HhaI GCGC 2 cut(s) 691, 727
Hin1II CATG 3 cut(s) 658, 761, 883
Hin6I GCGC 2 cut(s) 689, 725
HinP1I GCGC 2 cut(s) 689, 725
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 5 cut(s) 4, 40, 404, 930, 1003
HpaII CCGG 2 cut(s) 53, 376
Hpy166II GTNNAC 2 cut(s) 309, 719
Hpy188I TCNGA 5 cut(s) 403, 579, 610, 799, 1008
Hpy8I GTNNAC 2 cut(s) 309, 719
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 522
HpyCH4III ACNGT 4 cut(s) 18, 317, 585, 831
HpyCH4V TGCA 5 cut(s) 112, 166, 217, 500, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 497, 932
Hsp92II CATG 3 cut(s) 658, 761, 883
HspAI GCGC 2 cut(s) 689, 725
Kzo9I GATC 6 cut(s) 398, 413, 439, 610, 754, 802
LmnI GCTCC 1 cut(s) 424
Lsp1109I GCAGC 7 cut(s) 78, 114, 168, 229, 252, 276, 300
LweI GCATC 1 cut(s) 153
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 1 cut(s) 615
MaeIII GTNAC 2 cut(s) 650, 746
MalI GATC 6 cut(s) 400, 415, 441, 612, 756, 804
MboI GATC 6 cut(s) 398, 413, 439, 610, 754, 802
MlsI TGGCCA 2 cut(s) 384, 659
MluCI AATT 4 cut(s) 79, 169, 184, 391
MluNI TGGCCA 2 cut(s) 384, 659
Mox20I TGGCCA 2 cut(s) 384, 659
MroXI GAANNNNTTC 2 cut(s) 559, 643
MscI TGGCCA 2 cut(s) 384, 659
MseI TTAA 1 cut(s) 960
MslI CAYNNNNRTG 1 cut(s) 878
Msp20I TGGCCA 2 cut(s) 384, 659
MspA1I CMGCKG 1 cut(s) 203
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 2 cut(s) 53, 376
MspR9I CCNGG 3 cut(s) 300, 339, 480
Mva1269I GAATGC 1 cut(s) 812
MvaI CCWGG 3 cut(s) 300, 339, 480
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 3 cut(s) 223, 497, 932
NdeII GATC 6 cut(s) 398, 413, 439, 610, 754, 802
NlaIII CATG 3 cut(s) 658, 761, 883
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 527
NmuCI GTSAC 2 cut(s) 650, 746
PagI TCATGA 1 cut(s) 757
PceI AGGCCT 3 cut(s) 226, 250, 274
PctI GAATGC 1 cut(s) 812
PdmI GAANNNNTTC 2 cut(s) 559, 643
PfeI GAWTC 5 cut(s) 4, 40, 404, 930, 1003
PkrI GCNGC 7 cut(s) 68, 104, 158, 219, 242, 266, 290
PshAI GACNNNNGTC 1 cut(s) 601
Psp6I CCWGG 3 cut(s) 298, 337, 478
PspGI CCWGG 3 cut(s) 298, 337, 478
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 476
PstNI CAGNNNCTG 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 878
SalI GTCGAC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 960
SatI GCNGC 7 cut(s) 67, 103, 157, 218, 241, 265, 289
Sau3AI GATC 6 cut(s) 398, 413, 439, 610, 754, 802
Sau96I GGNCC 1 cut(s) 476
ScrFI CCNGG 3 cut(s) 300, 339, 480
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 1 cut(s) 153
SinI GGWCC 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 2 cut(s) 728, 959
SmoI CTYRAG 2 cut(s) 728, 959
Sse9I AATT 4 cut(s) 79, 169, 184, 391
SseBI AGGCCT 3 cut(s) 226, 250, 274
SsiI CCGC 3 cut(s) 201, 551, 847
SspMI CTAG 1 cut(s) 615
StuI AGGCCT 3 cut(s) 226, 250, 274
StyD4I CCNGG 3 cut(s) 298, 337, 478
StyI CCWWGG 1 cut(s) 614
TaaI ACNGT 4 cut(s) 18, 317, 585, 831
TaqI TCGA 4 cut(s) 116, 308, 698, 816
TaqII GACCGA 1 cut(s) 474
TasI AATT 4 cut(s) 79, 169, 184, 391
TfiI GAWTC 5 cut(s) 4, 40, 404, 930, 1003
Tru1I TTAA 1 cut(s) 960
Tru9I TTAA 1 cut(s) 960
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 2 cut(s) 650, 746
TseI GCWGC 7 cut(s) 66, 102, 156, 217, 240, 264, 288
Tsp45I GTSAC 2 cut(s) 650, 746
TspDTI ATGAA 6 cut(s) 17, 53, 371, 513, 774, 963
TspRI CASTG 1 cut(s) 441
Vha464I CTTAAG 1 cut(s) 959
VpaK11BI GGWCC 1 cut(s) 476
XapI RAATTY 4 cut(s) 79, 169, 184, 391
XmaJI CCTAGG 1 cut(s) 614
XmiI GTMKAC 1 cut(s) 308
XmnI GAANNNNTTC 2 cut(s) 559, 643
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.