Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003861

Physical Location & Seq

Genomic Coordinates Reverse (-)

32338765 .. 32339740

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1268800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCGGGGATATGGTAGAGATGAATTCCATCAATCAGTCAAAGAATATGATGATTTTGAGGACAGGGTGAGATACGGGGAAGCGGAGGAAGGAAAAGAAGATACAAAGCGCACCAAGGTAACAGTGGCACGTCTTGAGTTTAGACAGTGTTTGAAAGAACAACAAAGAAAGAAGTTTGAGACGGATGGTGGTTCTTCTCGAGACAAGTCCTATGAAAAGAAGAAGCTACCCTATGATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.66

Weight (kDa)

8.64

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT4G37860 AT4G37860
fragaria_vesca	FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820
malus_domestica	MD01G1046400.v1.1 MD02G1268800.v1.1 MD02G1269400.v1.1 MD02G1269600.v1.1 MD16G1281700.v1.1
prunus_persica	Prupe.6G211200_v2.0.a1 Prupe.6G211200_v2.0.a1
pyrus_communis	pycom15g26880 pycom16g22350 pycom16g25140
rosa_chinensis	RchiOBHm_Chr2g0109681
rosa_laevigata	RLG00000017756
rosa_multiflora	Rmu_sc0000332.1_g000063 Rmu_sc0036272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134030
rosa_rugosa	Rorug02G0162000
rosa_samantha	Rh2AG214200 Rh2BG224500 Rh2CG216500 Rh2DG219800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 83
AcsI	RAATTY	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	131
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	173, 195
Ama87I	CYCGRG	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	198
BccI	CCATC	2 cut(s)	36, 179
BcoDI	GTCTC	2 cut(s)	173, 195
BmeT110I	CYCGRG	1 cut(s)	198
BmgBI	CACGTC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	173, 195
BsmBI	CGTCTC	1 cut(s)	173
BsoBI	CYCGRG	1 cut(s)	198
BspACI	CCGC	2 cut(s)	4, 83
BssECI	CCNNGG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	124, 147
BstF5I	GGATG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	111
BstMAI	GTCTC	2 cut(s)	173, 195
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	129, 152
CfoI	GCGC	1 cut(s)	111
CviJI	RGCY	1 cut(s)	226
CviKI_1	RGCY	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	173
FaiI	YATR	4 cut(s)	12, 48, 213, 234
FokI	GGATG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HphI	GGTGA	1 cut(s)	79
Hpy188III	TCNNGA	3 cut(s)	134, 198, 200
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	124, 147
HpyCH4IV	ACGT	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	130
HspAI	GCGC	1 cut(s)	109
LpnPI	CCDG	1 cut(s)	49
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	110, 186, 232
MluCI	AATT	1 cut(s)	23
MnlI	CCTC	2 cut(s)	52, 79
PaeR7I	CTCGAG	1 cut(s)	198
SetI	ASST	3 cut(s)	120, 133, 228
Sfr274I	CTCGAG	1 cut(s)	198
SgeI	CNNG	9 cut(s)	17, 76, 88, 127, 141, 146, 210, 212, 217
SlaI	CTCGAG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	134, 198
SmoI	CTYRAG	2 cut(s)	134, 198
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	4, 83
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	124, 147
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	199
TasI	AATT	1 cut(s)	23
TscAI	CASTG	2 cut(s)	129, 152
TspDTI	ATGAA	2 cut(s)	36, 228
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	129, 152
XapI	RAATTY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.