AT4G37860

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003861
Physical Location & Seq
Reverse (-)
17800326 .. 17801914
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37860.1

Sequence Viewer

Length: 1065 bp
ATGCAATCAGAGTTTCTTGAATTGCGTCAACGGATTAAGGAATCGATTAGGACGAAGATGCAAAGCGGAGATACTATTATTGCTCCAACCTCACAGACACAGTTACATCAGAGCAAAAGTAATCTTCCGTACGACTTTGGTTCCTTTTTTGGTCCTTCTCAGACTGTTATTGCTTCAAGAGTCTTACAAGAAAGCAAGCCTCTTTTAGAAAACGAGACATCAGCAGCTAAAATGTTAAACTCTATTCAAAACGTATGTCTCATCAGATCCTTCTTTTTCACATTTTTGACGTTGCAAAAGAAAAGTTCTGTTCTAATGAATGATGCTTCAGGGACTAAGAATGCGAATGAGGTCAAACGAAAAGCTGAAAAACTTAAGGATGGAAGAGACTACTCATTCCTTTTCTCTGATGATGCTCAGCTTCCTGTTTCCATCAAGGAACCACCTACTTCTAGACCAAGTTCCACAGAGAGCCAAATGCAGCCAAGACCAGGTTCATCAAATAATGTACAAGCTCACACGAGGGAGGATTCGGCAATTAACTCTCAAAAGCGGAAATCAATGAACAAGAAGGGCCAACCAAGTTCCAAATTAGGCCATCAGAGACCACTGTCCTCAACAAAGCCATTGAGACATGATTCTAAACAACAAAGGGTAGAACAGAGAAATGTTTCCTTGGAACTCACAAGGTCGCAACTGCCTCCTGCGAAACACCAGTTGATTAGCAAACCACCATTGAAGCGAGTGAAGAAAAAGCCTGTGAAAATGTCAGAAGATGATTTGGCCTTGCAAATGGTTAGAAAGATGTGCAAGACTGATCGTTTTGCAGGGCGTGACGAAGACTATGATGATAGGTGCATGGAAGCCAACTTTGATGATATCATGAGGGAAGAGAAACGGAGTGAGAGACTTGCGAAGAAAGAAGACGCGGAACAACTGCGGTTGGTAGAGGAAGAAGAAAGAGTGAGAAGGCAGAAGAAGCAGAAACTTAGCCATTTGAAGAATTGTGGTTTAGGGTTAAAGAATCTACGCGTTTCTAATTTCAAAGTTACTTTTCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

354

Amino Acids

40.62

Weight (kDa)

9.9

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 262 - 327 8.8e-12 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 929, 1032
AciI CCGC 4 cut(s) 66, 553, 929, 940
AclWI GGATC 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 131, 510
AfiI CCNNNNNNNGG 1 cut(s) 491
AflII CTTAAG 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 1030
AgsI TTSAA 6 cut(s) 20, 177, 248, 739, 1000, 1045
AjnI CCWGG 1 cut(s) 490
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 4 cut(s) 227, 365, 421, 515
AluI AGCT 4 cut(s) 227, 365, 421, 515
Alw26I GTCTC 6 cut(s) 209, 263, 381, 598, 625, 901
AlwI GGATC 1 cut(s) 261
AoxI GGCC 3 cut(s) 574, 595, 783
ApeKI GCWGC 2 cut(s) 224, 481
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
Asp700I GAANNNNTTC 1 cut(s) 670
AspS9I GGNCC 2 cut(s) 152, 574
AvaII GGWCC 1 cut(s) 152
BauI CACGAG 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 846, 930
BbvI GCAGC 2 cut(s) 236, 493
BccI CCATC 3 cut(s) 374, 440, 606
BciT130I CCWGG 1 cut(s) 492
BcoDI GTCTC 6 cut(s) 209, 263, 381, 598, 625, 901
BfaI CTAG 1 cut(s) 453
BfrI CTTAAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 225, 482
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 2 cut(s) 226, 483
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 152, 574
BmiI GGNNCC 2 cut(s) 142, 441
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 3 cut(s) 48, 313, 403
BoxI GACNNNNGTC 1 cut(s) 610
BpiI GAAGAC 2 cut(s) 846, 930
Bpu1102I GCTNAGC 1 cut(s) 417
Bsa29I ATCGAT 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 1 cut(s) 675
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 715
BseBI CCWGG 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 675
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 2 cut(s) 173, 431
BseNI ACTGG 1 cut(s) 715
BseXI GCAGC 2 cut(s) 236, 493
Bsh1236I CGCG 2 cut(s) 929, 1032
BshFI GGCC 3 cut(s) 576, 597, 785
BshVI ATCGAT 1 cut(s) 44
BsiWI CGTACG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 6 cut(s) 209, 263, 381, 598, 625, 901
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 3 cut(s) 576, 597, 785
Bso31I GGTCTC 1 cut(s) 598
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 2 cut(s) 266, 817
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 4 cut(s) 66, 553, 929, 940
BspANI GGCC 3 cut(s) 576, 597, 785
BspCNI CTCAG 2 cut(s) 172, 430
BspDI ATCGAT 1 cut(s) 44
BspFNI CGCG 2 cut(s) 929, 1032
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 2 cut(s) 142, 441
BspPI GGATC 1 cut(s) 261
BspTI CTTAAG 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 598
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 1 cut(s) 715
BssECI CCNNGG 1 cut(s) 675
BssMI GATC 2 cut(s) 266, 817
BssSI CACGAG 1 cut(s) 520
BssT1I CCWWGG 1 cut(s) 675
Bst2BI CACGAG 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 3 cut(s) 102, 166, 612
Bst6I CTCTTC 2 cut(s) 379, 885
BstAFI CTTAAG 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 4 cut(s) 159, 336, 417, 989
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 2 cut(s) 929, 1032
BstKTI GATC 2 cut(s) 269, 820
BstMAI GTCTC 6 cut(s) 209, 263, 381, 598, 625, 901
BstMBI GATC 2 cut(s) 266, 817
BstMWI GCNNNNNNNGC 1 cut(s) 979
BstNI CCWGG 1 cut(s) 492
BstPAI GACNNNNGTC 1 cut(s) 610
BstSCI CCNGG 1 cut(s) 490
BstUI CGCG 2 cut(s) 929, 1032
BstV1I GCAGC 2 cut(s) 236, 493
BstV2I GAAGAC 2 cut(s) 846, 930
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
Bsu15I ATCGAT 1 cut(s) 44
BsuRI GGCC 3 cut(s) 576, 597, 785
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 608
Cac8I GCNNGC 1 cut(s) 197
CciI TCATGA 1 cut(s) 882
Cfr13I GGNCC 2 cut(s) 152, 574
ClaI ATCGAT 1 cut(s) 44
CseI GACGC 2 cut(s) 14, 935
CsiI ACCWGGT 1 cut(s) 490
Csp6I GTAC 2 cut(s) 130, 509
CviAII CATG 3 cut(s) 635, 859, 883
CviQI GTAC 2 cut(s) 130, 509
DdeI CTNAG 4 cut(s) 159, 336, 417, 989
DpnI GATC 2 cut(s) 268, 819
DpnII GATC 2 cut(s) 266, 817
Eam1104I CTCTTC 2 cut(s) 379, 885
EarI CTCTTC 2 cut(s) 379, 885
Eco130I CCWWGG 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 598
Eco32I GATATC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 490
EcoRV GATATC 1 cut(s) 880
EcoT14I CCWWGG 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 3 cut(s) 638, 862, 886
FaiI YATR 5 cut(s) 256, 636, 846, 860, 884
FaqI GGGAC 1 cut(s) 346
FatI CATG 3 cut(s) 634, 858, 882
Fnu4HI GCNGC 2 cut(s) 225, 482
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 225, 482
FspBI CTAG 1 cut(s) 453
GluI GCNGC 2 cut(s) 225, 482
HaeIII GGCC 3 cut(s) 576, 597, 785
HgaI GACGC 2 cut(s) 14, 935
Hin1II CATG 3 cut(s) 638, 862, 886
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HinfI GANTC 5 cut(s) 41, 180, 530, 638, 1024
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 7 cut(s) 10, 111, 162, 266, 409, 603, 772
Hpy188III TCNNGA 4 cut(s) 17, 177, 453, 883
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 4 cut(s) 165, 280, 565, 963
HpyCH4III ACNGT 3 cut(s) 102, 166, 612
HpyCH4IV ACGT 2 cut(s) 252, 290
HpyCH4V TGCA 8 cut(s) 4, 61, 295, 481, 790, 810, 827, 858
HpyF10VI GCNNNNNNNGC 1 cut(s) 979
HpyF3I CTNAG 4 cut(s) 159, 336, 417, 989
HpySE526I ACGT 2 cut(s) 252, 290
Hsp92II CATG 3 cut(s) 638, 862, 886
Kzo9I GATC 2 cut(s) 266, 817
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 315, 438, 477, 504, 717, 728, 771, 813
Lsp1109I GCAGC 2 cut(s) 236, 493
LweI GCATC 3 cut(s) 48, 313, 403
MabI ACCWGGT 1 cut(s) 490
MaeI CTAG 1 cut(s) 453
MaeII ACGT 2 cut(s) 252, 290
MaeIII GTNAC 3 cut(s) 102, 833, 1048
MalI GATC 2 cut(s) 268, 819
MboI GATC 2 cut(s) 266, 817
MflI RGATCY 1 cut(s) 266
MluCI AATT 5 cut(s) 20, 537, 590, 1003, 1039
MluI ACGCGT 1 cut(s) 1030
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 9 cut(s) 100, 210, 343, 516, 520, 625, 711, 879, 943
MroXI GAANNNNTTC 1 cut(s) 670
MseI TTAA 5 cut(s) 36, 236, 375, 540, 1019
MspCI CTTAAG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 1 cut(s) 492
MvnI CGCG 2 cut(s) 929, 1032
MwoI GCNNNNNNNGC 1 cut(s) 979
NdeII GATC 2 cut(s) 266, 817
NlaIII CATG 3 cut(s) 638, 862, 886
NlaIV GGNNCC 2 cut(s) 142, 441
NmuCI GTSAC 1 cut(s) 833
PagI TCATGA 1 cut(s) 882
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 670
PfeI GAWTC 4 cut(s) 41, 530, 638, 1024
Pfl23II CGTACG 1 cut(s) 129
PkrI GCNGC 2 cut(s) 226, 483
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PshAI GACNNNNGTC 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspLI CGTACG 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 142, 441
PspPI GGNCC 2 cut(s) 152, 574
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 2 cut(s) 131, 510
RsaNI GTAC 2 cut(s) 130, 509
SaqAI TTAA 5 cut(s) 36, 236, 375, 540, 1019
SatI GCNGC 2 cut(s) 225, 482
Sau3AI GATC 2 cut(s) 266, 817
Sau96I GGNCC 2 cut(s) 152, 574
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 492
SexAI ACCWGGT 1 cut(s) 490
SfaNI GCATC 3 cut(s) 48, 313, 403
SinI GGWCC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 5 cut(s) 20, 537, 590, 1003, 1039
SsiI CCGC 4 cut(s) 66, 553, 929, 940
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 3 cut(s) 102, 166, 612
TaiI ACGT 2 cut(s) 255, 293
TaqI TCGA 1 cut(s) 44
TasI AATT 5 cut(s) 20, 537, 590, 1003, 1039
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 4 cut(s) 41, 530, 638, 1024
Tru1I TTAA 5 cut(s) 36, 236, 375, 540, 1019
Tru9I TTAA 5 cut(s) 36, 236, 375, 540, 1019
TscAI CASTG 1 cut(s) 615
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 2 cut(s) 224, 481
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 3 cut(s) 332, 486, 578
TspGWI ACGGA 3 cut(s) 46, 117, 913
TspRI CASTG 1 cut(s) 615
Vha464I CTTAAG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 152
XbaI TCTAGA 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 670
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.