Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003861

Physical Location & Seq

Genomic Coordinates Forward (+)

32422296 .. 32427458

Gene Structure 5163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1269600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGAGATTACTCACAAATTTTCTCTAACGATGCGAAGCGTCCAGCTCCTGCCAAGGATTGTCCCCCAAAAAATGTCTCTCTTCCAAATTCTGGGGTGAGATCAAATCGTATTTCGATGAAAAGCAAACACCCATTGGAAAGTAATGGTAGGAAAGCCCCAACCAGCGGAAAAATTGATTCAAAATCAATGGGCACTAGGAAACAGCTTGATAGAAATGAAAGTGGGTCGGGCCGGCCTTTAGGGTCAAATGGGCTTCCATTGAAGATGTCTGCTTCAACTACTGAGAGGAAGACTTCCGCATCTGGTGCGAAGACTTCCGATGATGAGCATGACCCTGAGGCCGGGAATGTTCGTGATGTGATAAGAAAAATGTTTCGATTTGCTGCTGATGCTGAAGACCATAGTGACATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPT2

Protein Analysis

140

Amino Acids

15.12

Weight (kDa)

9.62

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT4G37860 AT4G37860
fragaria_vesca	FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820
malus_domestica	MD01G1046400.v1.1 MD02G1268800.v1.1 MD02G1269400.v1.1 MD02G1269600.v1.1 MD16G1281700.v1.1
prunus_persica	Prupe.6G211200_v2.0.a1 Prupe.6G211200_v2.0.a1
pyrus_communis	pycom15g26880 pycom16g22350 pycom16g25140
rosa_chinensis	RchiOBHm_Chr2g0109681
rosa_laevigata	RLG00000017756
rosa_multiflora	Rmu_sc0000332.1_g000063 Rmu_sc0036272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134030
rosa_rugosa	Rorug02G0162000
rosa_samantha	Rh2AG214200 Rh2BG224500 Rh2CG216500 Rh2DG219800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	92
AciI	CCGC	2 cut(s)	168, 300
AcsI	RAATTY	2 cut(s)	18, 88
AcuI	CTGAAG	1 cut(s)	417
AfiI	CCNNNNNNNGG	3 cut(s)	92, 167, 344
AgsI	TTSAA	3 cut(s)	183, 265, 279
AluBI	AGCT	2 cut(s)	47, 208
AluI	AGCT	2 cut(s)	47, 208
Alw26I	GTCTC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	232, 236, 342
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	18, 88
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	197
BbsI	GAAGAC	3 cut(s)	299, 320, 405
BbvI	GCAGC	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	3 cut(s)	22, 311, 382
BpiI	GAAGAC	3 cut(s)	299, 320, 405
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 167, 344
Bse118I	RCCGGY	1 cut(s)	234
Bse21I	CCTNAGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	3 cut(s)	92, 167, 344
BseMII	CTCAG	2 cut(s)	276, 330
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	3 cut(s)	234, 238, 344
BsiSI	CCGG	2 cut(s)	235, 345
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	3 cut(s)	92, 167, 344
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	3 cut(s)	234, 238, 344
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	101
BspACI	CCGC	2 cut(s)	168, 300
BspANI	GGCC	3 cut(s)	234, 238, 344
BspCNI	CTCAG	2 cut(s)	277, 331
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	285, 339
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 392
BstSCI	CCNGG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	3 cut(s)	299, 320, 405
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	234, 238, 344
Cac8I	GCNNGC	1 cut(s)	236
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	29
CviAII	CATG	2 cut(s)	332, 412
CviJI	RGCY	7 cut(s)	47, 158, 208, 234, 238, 256, 344
CviKI_1	RGCY	7 cut(s)	47, 158, 208, 234, 238, 256, 344
DdeI	CTNAG	2 cut(s)	285, 339
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	335, 415
FaiI	YATR	3 cut(s)	333, 405, 413
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	2 cut(s)	331, 411
Fnu4HI	GCNGC	1 cut(s)	387
FseI	GGCCGGCC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	234, 238, 344
HapII	CCGG	2 cut(s)	235, 345
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	335, 415
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	235, 345
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 392
HpyF3I	CTNAG	2 cut(s)	285, 339
Hsp92II	CATG	2 cut(s)	335, 415
KroI	GCCGGC	1 cut(s)	234
KroNI	GCCGGC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	8 cut(s)	57, 63, 78, 178, 248, 291, 351, 358
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	3 cut(s)	22, 311, 382
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	5 cut(s)	74, 277, 304, 325, 410
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	3 cut(s)	18, 88, 174
MnlI	CCTC	2 cut(s)	282, 334
MroNI	GCCGGC	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	2 cut(s)	235, 345
MspR9I	CCNGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	2 cut(s)	308, 392
NaeI	GCCGGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	1 cut(s)	101
NgoMIV	GCCGGC	1 cut(s)	234
NlaIII	CATG	2 cut(s)	335, 415
NmuCI	GTSAC	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	50
RigI	GGCCGGCC	1 cut(s)	238
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	2 cut(s)	49, 210
SfaNI	GCATC	3 cut(s)	22, 311, 382
Sse9I	AATT	3 cut(s)	18, 88, 174
SsiI	CCGC	2 cut(s)	168, 300
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	54
TaqI	TCGA	2 cut(s)	116, 379
TasI	AATT	3 cut(s)	18, 88, 174
TfiI	GAWTC	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	134, 234
Van91I	CCANNNNNTGG	1 cut(s)	92
XapI	RAATTY	2 cut(s)	18, 88
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.