Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036272.1

Orthogroup ID

OG0003861

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2015

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036272.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

gagcaaggagatgagtatgaagatgaagaggaagaggaagaagaagaagctccaaaacctaccaaggaagcattggagtatcttgagttgagacaacgcttgaaagaacaagttcgaaggcagatgaagaagaaggaaggtggttctcgggccaactccaatgatagaaaaaagctcccctatgataattttggatcgttctttggcccttctcaaccagttatcgctcagagagtaattcaagaaagcaagtcgttgttggaaacccagcatctggcatctagggccacaaactctgtccatcctaacaagaagagctctgggtctacctctggtggctctaaatctgttgcacataacccgaaacccaaagtaattaatgagcaaaaaaataaactccaaaagcttaaagacactagagattactcatttttattatctgaagatgtggagcttcctgctcctgcaaaggatcgtccctctcgaagtgactctgctctgaagtctgaggtgcgatcaagtcaaacaatggcaaaaagtaaacaacctttggcaaataatggtagacctgtccatggtggtcatgataatggtagatctgttcatggcagtcgtgagaatgggagacctgttcatggcagtcgtgagaatgggagacctgttcatggcagtcgtgagaatgggagacctgttcagggcagtcgtgagaatgggagacctgttcaaggcagtcgtgagaatgggagacctgttcagtctggtcgtgatgaaaggaaagcggttcctactaatggacatatgcattctaaagttgggtccaataggccaagttctgccagtagccgacctggttcaacatcaatggactctagaaaacaacttggtagcaacaatgcaaatgggcctggccggcctctagggccaaaaggtctgccttcaaagatgcctgcttctaccacagagaggagggcttctgcaccagttttgaagaattccctgtcttctttgcagaaagcaccctcttcgaagtcgcagtcatctgttcagaggcagccagtacagcaaagaaaagaagtacgagaaccttctaagcccaatatgttatcaaaacagtccacgggattgtcaaaacctcaggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPT2

Protein Analysis

380

Amino Acids

41.63

Weight (kDa)

10.25

Isoelectric Point (pI)

65.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT2G22720 AT4G37860 AT4G37860
fragaria_vesca	FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820 FvH4_1g18820
malus_domestica	MD01G1046400.v1.1 MD02G1268800.v1.1 MD02G1269400.v1.1 MD02G1269600.v1.1 MD16G1281700.v1.1
prunus_persica	Prupe.6G211200_v2.0.a1 Prupe.6G211200_v2.0.a1
pyrus_communis	pycom15g26880 pycom16g22350 pycom16g25140
rosa_chinensis	RchiOBHm_Chr2g0109681
rosa_laevigata	RLG00000017756
rosa_multiflora	Rmu_sc0000332.1_g000063 Rmu_sc0036272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134030
rosa_rugosa	Rorug02G0162000
rosa_samantha	Rh2AG214200 Rh2BG224500 Rh2CG216500 Rh2DG219800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccI	GTMKAC	2 cut(s)	326, 565
AciI	CCGC	1 cut(s)	779
AclWI	GGATC	2 cut(s)	202, 480
AcoI	YGGCCR	1 cut(s)	907
AcsI	RAATTY	1 cut(s)	991
AcuI	CTGAAG	2 cut(s)	462, 521
AfaI	GTAC	2 cut(s)	1059, 1077
AfiI	CCNNNNNNNGG	8 cut(s)	274, 575, 635, 665, 695, 725, 791, 963
AgsI	TTSAA	6 cut(s)	103, 242, 725, 855, 939, 988
AjnI	CCWGG	2 cut(s)	847, 904
AluBI	AGCT	5 cut(s)	50, 175, 318, 406, 454
AluI	AGCT	5 cut(s)	50, 175, 318, 406, 454
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	6 cut(s)	85, 619, 649, 679, 709, 739
AlwI	GGATC	2 cut(s)	202, 480
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	8 cut(s)	150, 205, 285, 824, 902, 907, 911, 920
ApeKI	GCWGC	1 cut(s)	1051
ApoI	RAATTY	1 cut(s)	991
ArsI	GACNNNNNNTTYG	2 cut(s)	1019, 1051
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	111
AspS9I	GGNCC	6 cut(s)	150, 206, 285, 816, 902, 920
AsuII	TTCGAA	2 cut(s)	115, 1025
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	816
AxyI	CCTNAGG	1 cut(s)	1134
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	993
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	1063
BccI	CCATC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	1005, 1039
BciT130I	CCWGG	2 cut(s)	849, 906
BcoDI	GTCTC	6 cut(s)	85, 619, 649, 679, 709, 739
BfaI	CTAG	4 cut(s)	282, 417, 870, 917
BglI	GCCNNNNNGGC	2 cut(s)	910, 919
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	1 cut(s)	1052
BlsI	GCNGC	1 cut(s)	1053
Bme1390I	CCNGG	2 cut(s)	849, 906
Bme18I	GGWCC	1 cut(s)	816
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	6 cut(s)	150, 206, 285, 816, 902, 920
BmiI	GGNNCC	2 cut(s)	783, 817
BmrFI	CCNGG	2 cut(s)	849, 906
BmsI	GCATC	3 cut(s)	280, 287, 933
BpiI	GAAGAC	1 cut(s)	993
Bpu14I	TTCGAA	2 cut(s)	115, 1025
BpuEI	CTTGAG	1 cut(s)	104
BsaI	GGTCTC	5 cut(s)	619, 649, 679, 709, 739
BsaJI	CCNNGG	3 cut(s)	63, 574, 1116
Bsc4I	CCNNNNNNNGG	8 cut(s)	274, 575, 635, 665, 695, 725, 791, 963
Bse118I	RCCGGY	1 cut(s)	909
Bse1I	ACTGG	4 cut(s)	218, 837, 980, 1055
Bse21I	CCTNAGG	1 cut(s)	1134
BseBI	CCWGG	2 cut(s)	849, 906
BseDI	CCNNGG	3 cut(s)	63, 574, 1116
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	8 cut(s)	274, 575, 635, 665, 695, 725, 791, 963
BseMII	CTCAG	2 cut(s)	242, 498
BseNI	ACTGG	4 cut(s)	218, 837, 980, 1055
BseRI	GAGGAG	1 cut(s)	979
BseXI	GCAGC	1 cut(s)	1063
BseYI	CCCAGC	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	960
BshFI	GGCC	8 cut(s)	152, 207, 287, 826, 904, 909, 913, 922
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	910
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	8 cut(s)	274, 575, 635, 665, 695, 725, 791, 963
BsmAI	GTCTC	6 cut(s)	85, 619, 649, 679, 709, 739
BsmFI	GGGAC	1 cut(s)	462
BsmI	GAATGC	1 cut(s)	802
BsnI	GGCC	8 cut(s)	152, 207, 287, 826, 904, 909, 913, 922
Bso31I	GGTCTC	5 cut(s)	619, 649, 679, 709, 739
BsoBI	CYCGRG	1 cut(s)	147
Bsp119I	TTCGAA	2 cut(s)	115, 1025
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	4 cut(s)	194, 472, 515, 596
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	1 cut(s)	779
BspANI	GGCC	8 cut(s)	152, 207, 287, 826, 904, 909, 913, 922
BspCNI	CTCAG	2 cut(s)	241, 499
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	783, 817
BspPI	GGATC	2 cut(s)	202, 480
BspQI	GCTCTTC	1 cut(s)	308
BspT104I	TTCGAA	2 cut(s)	115, 1025
BspTNI	GGTCTC	5 cut(s)	619, 649, 679, 709, 739
BsrFI	RCCGGY	1 cut(s)	909
BsrI	ACTGG	4 cut(s)	218, 837, 980, 1055
BssAI	RCCGGY	1 cut(s)	909
BssECI	CCNNGG	3 cut(s)	63, 574, 1116
BssMI	GATC	4 cut(s)	194, 472, 515, 596
BssT1I	CCWWGG	2 cut(s)	63, 574
Bst2UI	CCWGG	2 cut(s)	849, 906
Bst4CI	ACNGT	1 cut(s)	1113
Bst6I	CTCTTC	4 cut(s)	21, 27, 308, 1027
BstBI	TTCGAA	2 cut(s)	115, 1025
BstC8I	GCNNGC	2 cut(s)	911, 948
BstDEI	CTNAG	4 cut(s)	228, 507, 1089, 1134
BstDSI	CCRYGG	2 cut(s)	574, 1116
BstENI	CCTNNNNNAGG	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	4 cut(s)	197, 475, 518, 599
BstMAI	GTCTC	6 cut(s)	85, 619, 649, 679, 709, 739
BstMBI	GATC	4 cut(s)	194, 472, 515, 596
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 910, 919, 1060
BstNI	CCWGG	2 cut(s)	849, 906
BstSCI	CCNGG	2 cut(s)	847, 904
BstV1I	GCAGC	1 cut(s)	1063
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
Bsu36I	CCTNAGG	1 cut(s)	1134
BsuRI	GGCC	8 cut(s)	152, 207, 287, 826, 904, 909, 913, 922
BtgI	CCRYGG	2 cut(s)	574, 1116
BtsCI	GGATG	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	911, 948
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	583
Cfr10I	RCCGGY	1 cut(s)	909
Cfr13I	GGNCC	6 cut(s)	150, 206, 285, 816, 902, 920
CsiI	ACCWGGT	1 cut(s)	847
Csp6I	GTAC	2 cut(s)	1058, 1076
CviAII	CATG	5 cut(s)	575, 584, 605, 635, 665
CviQI	GTAC	2 cut(s)	1058, 1076
DdeI	CTNAG	4 cut(s)	228, 507, 1089, 1134
DpnI	GATC	4 cut(s)	196, 474, 517, 598
DpnII	GATC	4 cut(s)	194, 472, 515, 596
EaeI	YGGCCR	1 cut(s)	907
Eam1104I	CTCTTC	4 cut(s)	21, 27, 308, 1027
EarI	CTCTTC	4 cut(s)	21, 27, 308, 1027
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	63, 574
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	5 cut(s)	619, 649, 679, 709, 739
Eco47I	GGWCC	1 cut(s)	816
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	462, 521
Eco81I	CCTNAGG	1 cut(s)	1134
Eco88I	CYCGRG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	318
EcoNI	CCTNNNNNAGG	1 cut(s)	723
EcoRI	GAATTC	1 cut(s)	991
EcoRII	CCWGG	2 cut(s)	847, 904
EcoT14I	CCWWGG	2 cut(s)	63, 574
EcoT22I	ATGCAT	1 cut(s)	804
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	63, 574
FaeI	CATG	5 cut(s)	578, 587, 608, 638, 668
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	5 cut(s)	574, 583, 604, 634, 664
FauNDI	CATATG	1 cut(s)	798
FblI	GTMKAC	2 cut(s)	326, 565
Fnu4HI	GCNGC	1 cut(s)	1052
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	320
FseI	GGCCGGCC	1 cut(s)	913
Fsp4HI	GCNGC	1 cut(s)	1052
FspBI	CTAG	4 cut(s)	282, 417, 870, 917
GluI	GCNGC	1 cut(s)	1052
GsaI	CCCAGC	1 cut(s)	271
HaeIII	GGCC	8 cut(s)	152, 207, 287, 826, 904, 909, 913, 922
HapII	CCGG	1 cut(s)	910
Hin1II	CATG	5 cut(s)	578, 587, 608, 638, 668
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	2 cut(s)	491, 866
HpaII	CCGG	1 cut(s)	910
Hpy166II	GTNNAC	4 cut(s)	327, 542, 566, 1116
Hpy188I	TCNGA	5 cut(s)	231, 442, 501, 508, 1047
Hpy8I	GTNNAC	4 cut(s)	327, 542, 566, 1116
HpyAV	CCTTC	6 cut(s)	111, 127, 131, 219, 945, 1095
HpyCH4III	ACNGT	1 cut(s)	1113
HpyCH4V	TGCA	6 cut(s)	353, 467, 802, 896, 977, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 910, 919, 1060
HpyF3I	CTNAG	4 cut(s)	228, 507, 1089, 1134
Hsp92II	CATG	5 cut(s)	578, 587, 608, 638, 668
KroI	GCCGGC	1 cut(s)	909
KroNI	GCCGGC	1 cut(s)	911
Kzo9I	GATC	4 cut(s)	194, 472, 515, 596
LguI	GCTCTTC	1 cut(s)	308
LmnI	GCTCC	4 cut(s)	55, 180, 451, 466
Lsp1109I	GCAGC	1 cut(s)	1063
LweI	GCATC	3 cut(s)	280, 287, 933
MabI	ACCWGGT	1 cut(s)	847
MaeI	CTAG	4 cut(s)	282, 417, 870, 917
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	4 cut(s)	196, 474, 517, 598
MboI	GATC	4 cut(s)	194, 472, 515, 596
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	4 cut(s)	187, 237, 375, 991
MlyI	GAGTC	2 cut(s)	485, 860
MmeI	TCCRAC	1 cut(s)	240
Mph1103I	ATGCAT	1 cut(s)	804
MroNI	GCCGGC	1 cut(s)	909
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	2 cut(s)	378, 408
MslI	CAYNNNNRTG	1 cut(s)	588
MspI	CCGG	1 cut(s)	910
MspR9I	CCNGG	2 cut(s)	849, 906
Mva1269I	GAATGC	1 cut(s)	802
MvaI	CCWGG	2 cut(s)	849, 906
MwoI	GCNNNNNNNGC	4 cut(s)	284, 910, 919, 1060
NaeI	GCCGGC	1 cut(s)	911
NcoI	CCATGG	1 cut(s)	574
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	4 cut(s)	194, 472, 515, 596
NgoMIV	GCCGGC	1 cut(s)	909
NlaIII	CATG	5 cut(s)	578, 587, 608, 638, 668
NlaIV	GGNNCC	2 cut(s)	783, 817
NmuCI	GTSAC	1 cut(s)	488
NsiI	ATGCAT	1 cut(s)	804
NspV	TTCGAA	2 cut(s)	115, 1025
PagI	TCATGA	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PctI	GAATGC	1 cut(s)	802
PdiI	GCCGGC	1 cut(s)	911
PdmI	GAANNNNTTC	1 cut(s)	111
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	1053
PleI	GAGTC	2 cut(s)	485, 860
PpsI	GAGTC	2 cut(s)	485, 860
PshBI	ATTAAT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	847, 904
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	2 cut(s)	847, 904
PspN4I	GGNNCC	2 cut(s)	783, 817
PspPI	GGNCC	6 cut(s)	150, 206, 285, 816, 902, 920
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	596
RigI	GGCCGGCC	1 cut(s)	913
RsaI	GTAC	2 cut(s)	1059, 1077
RsaNI	GTAC	2 cut(s)	1058, 1076
RseI	CAYNNNNRTG	1 cut(s)	588
SacI	GAGCTC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	378, 408
SatI	GCNGC	1 cut(s)	1052
Sau3AI	GATC	4 cut(s)	194, 472, 515, 596
Sau96I	GGNCC	6 cut(s)	150, 206, 285, 816, 902, 920
SchI	GAGTC	2 cut(s)	485, 860
ScrFI	CCNGG	2 cut(s)	849, 906
SduI	GDGCHC	1 cut(s)	320
SexAI	ACCWGGT	1 cut(s)	847
SfaNI	GCATC	3 cut(s)	280, 287, 933
SfiI	GGCCNNNNNGGCC	2 cut(s)	910, 919
SfuI	TTCGAA	2 cut(s)	115, 1025
SinI	GGWCC	1 cut(s)	816
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	4 cut(s)	187, 237, 375, 991
SsiI	CCGC	1 cut(s)	779
SspMI	CTAG	4 cut(s)	282, 417, 870, 917
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	847, 904
StyI	CCWWGG	2 cut(s)	63, 574
TaaI	ACNGT	1 cut(s)	1113
TaqI	TCGA	3 cut(s)	115, 484, 1025
TasI	AATT	4 cut(s)	187, 237, 375, 991
TatI	WGTACW	1 cut(s)	1057
Tru1I	TTAA	2 cut(s)	378, 408
Tru9I	TTAA	2 cut(s)	378, 408
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	1 cut(s)	1051
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	7 cut(s)	33, 39, 140, 593, 623, 653, 783
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	816
VspI	ATTAAT	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	723
XapI	RAATTY	1 cut(s)	991
XbaI	TCTAGA	1 cut(s)	869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmiI	GTMKAC	2 cut(s)	326, 565
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	4 cut(s)	282, 417, 870, 917
Zsp2I	ATGCAT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.