RchiOBHm_Chr2g0109681

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003861
Physical Location & Seq
Reverse (-)
21039426 .. 21043625
4200 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48349

Sequence Viewer

Length: 1488 bp
ATGCGGGGATATGATACACAGAGATTCGATCGACCAGTTGAGGAATATGATGATTATGAGTCCGAGGGGGATGGATATGGATACGAGGAGGAAAGAGATGAGTATGAAGATGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGCTCCAAAACCCACCAAGGAAGCATTGGAGTACCTTGAGTTGAGACAACGCTTGAAAGAACAAGTTCGAAGGCAGATGAAGAAGAAGGAAGGTGGTTCTCGGGCCAACTCCAATGATAGAAAAAAGCTCCCCTACGATAATTTTGGATCGTTCTTTGGCCCTTCTCAACCAGTTATCGCTCAGAGAGTAATTCAAGAAAGCAAGTCGTTGTTGGAAACCCAGCATCTGGCATCTAGGGCCACAAACTCTGTCCATCCTAACAAGAAGAGCTCTGGGTCTACCTCTGGTGGCTCTAAATCTGTTGCACATAACCCGAAACCCAAAGTAATTAATGAGCAAAAAAATAAACTCCAAAAGCTTAAAGACACTAGAGATTACTCATTTTTATTATCTGAAGATGCGGAGCTTCCTGCTCCTGCAAAGGATCGTCCCCCTCGAAGTGACTCTGCTCTGAAGTCTGAGGTGCGATCAAGTCAAACAATGGCAAAAAGTAAACAACCTTTGGCAAATAATGGTAGACCTGTCCATGGTGGTCTTGATAATGGTAGATCTGTTCATGGCAGTCGTGAGAATGGGAGACCTGTTCAAGGCAGTCGTGAGAATGGGAGACCTGTTCAGTCTGGTCGTGATGAAAGGAAAGCGGTTCCTACTAATGGACATATGCATTCTAAAGTTGGGTCCAATAGGCCAAGTTCTGCCAGTAGCCGACCTGGTTCAACATCAATGGACTCTAGAAAACAACTTGGTAGCAACAATGCAAATGGGCCTGGCCGGCCTCTAGGGCCAAAAGGTCTGCCTTCAAAGATGCCTGCTTCTACCACAGAGAGGAGGGCTTCTGCACCAGGTTTGAAGAATTCCCTGTCTTCTTTGCAGAAAGCACCCTCTTCAACGTCGCAGTCATCTGTTCAGAGGCAGCCAGTACAGCAAAGAAAAGAAATACGAGAACCTTCTAAGCCCAATATGTTATCAAAACAGTCCACGGGATTGTCAAAACCTCAGATCCACAAGCCACAAATGCATAAGCAAATCCCATCACGTCCTGTGTCACAAGAGTATCGTCCCAAAAAAAGGCCTGCAAGCAGGTTTGCAGATGATGAGTATGACCCTGAATCGGGGGATATTAGTAGTATGATCAGAAACATGTTTGGTTACAATCCAACTAAATTTGCTGATGATGACGACGTTAGTGACATGGAGGCAGGATTTGAAGATATTCAGAGGGAGGAGAGGAGAAGTGCAAAAATTGCAAGACAGGAGGATGAAGAACAAGCTAGGTTGATAGAAGAAGAAGAAAGGAGGGAACGTTTGGCCGCCAAGATGAGAAAACAGAAGAAGCTCAAGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

495

Amino Acids

55.77

Weight (kDa)

9.43

Isoelectric Point (pI)

72.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 394 - 482 3.7e-19 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1212
AccB7I CCANNNNNTGG 1 cut(s) 367
AccI GTMKAC 2 cut(s) 419, 658
AciI CCGC 4 cut(s) 4, 542, 782, 1452
AclI AACGTT 1 cut(s) 1444
AclWI GGATC 3 cut(s) 295, 573, 1135
AcoI YGGCCR 2 cut(s) 910, 1449
AcsI RAATTY 2 cut(s) 994, 1304
AcuI CTGAAG 2 cut(s) 555, 614
AfaI GTAC 2 cut(s) 173, 1062
AfiI CCNNNNNNNGG 8 cut(s) 367, 668, 728, 794, 966, 1209, 1252, 1253
AflIII ACRYGT 1 cut(s) 1281
AgsI TTSAA 8 cut(s) 196, 335, 728, 858, 942, 991, 1029, 1349
AjiI CACGTC 1 cut(s) 1178
AjnI CCWGG 3 cut(s) 850, 907, 982
AluBI AGCT 7 cut(s) 143, 268, 411, 499, 547, 1412, 1477
AluI AGCT 7 cut(s) 143, 268, 411, 499, 547, 1412, 1477
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 3 cut(s) 178, 712, 742
AlwI GGATC 3 cut(s) 295, 573, 1135
AlwNI CAGNNNCTG 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 1054
ApoI RAATTY 2 cut(s) 994, 1304
AseI ATTAAT 1 cut(s) 471
Asp700I GAANNNNTTC 2 cut(s) 204, 1353
AspS9I GGNCC 6 cut(s) 243, 299, 378, 819, 905, 923
AsuII TTCGAA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 240
AvaII GGWCC 1 cut(s) 819
BaeI ACNNNNGTAYC 2 cut(s) 1178, 1211
BanII GRGCYC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 1 cut(s) 413
BbvI GCAGC 1 cut(s) 1066
BccI CCATC 3 cut(s) 65, 402, 1180
BciT130I CCWGG 3 cut(s) 852, 909, 984
BciVI GTATCC 1 cut(s) 74
BclI TGATCA 1 cut(s) 1272
BcoDI GTCTC 3 cut(s) 178, 712, 742
BfaI CTAG 5 cut(s) 375, 510, 873, 920, 1413
BfuAI ACCTGC 1 cut(s) 1212
BfuI GTATCC 1 cut(s) 74
BglI GCCNNNNNGGC 2 cut(s) 913, 922
BglII AGATCT 1 cut(s) 689
BisI GCNGC 2 cut(s) 1055, 1452
BlsI GCNGC 2 cut(s) 1056, 1453
Bme1390I CCNGG 3 cut(s) 852, 909, 984
Bme18I GGWCC 1 cut(s) 819
BmeT110I CYCGRG 1 cut(s) 240
BmgBI CACGTC 1 cut(s) 1178
BmgT120I GGNCC 6 cut(s) 243, 299, 378, 819, 905, 923
BmiI GGNNCC 2 cut(s) 786, 820
BmrFI CCNGG 3 cut(s) 852, 909, 984
BmsI GCATC 4 cut(s) 373, 380, 529, 936
BpiI GAAGAC 1 cut(s) 996
Bpu14I TTCGAA 1 cut(s) 208
BpuEI CTTGAG 2 cut(s) 197, 1463
BsaI GGTCTC 2 cut(s) 712, 742
BsaJI CCNNGG 4 cut(s) 63, 156, 667, 1119
BsaXI ACNNNNNCTCC 2 cut(s) 1429, 1459
Bsc4I CCNNNNNNNGG 8 cut(s) 367, 668, 728, 794, 966, 1209, 1252, 1253
Bse118I RCCGGY 1 cut(s) 912
Bse1I ACTGG 4 cut(s) 35, 311, 840, 1058
BseBI CCWGG 3 cut(s) 852, 909, 984
BseDI CCNNGG 4 cut(s) 63, 156, 667, 1119
BseGI GGATG 3 cut(s) 76, 394, 1405
BseLI CCNNNNNNNGG 8 cut(s) 367, 668, 728, 794, 966, 1209, 1252, 1253
BseMII CTCAG 3 cut(s) 335, 591, 1151
BseNI ACTGG 4 cut(s) 35, 311, 840, 1058
BseRI GAGGAG 4 cut(s) 101, 982, 1379, 1384
BseXI GCAGC 1 cut(s) 1066
BseYI CCCAGC 1 cut(s) 360
BsgI GTGCAG 1 cut(s) 963
Bsh1285I CGRYCG 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 913
BslFI GGGAC 2 cut(s) 555, 1185
BslI CCNNNNNNNGG 8 cut(s) 367, 668, 728, 794, 966, 1209, 1252, 1253
BsmAI GTCTC 3 cut(s) 178, 712, 742
BsmFI GGGAC 2 cut(s) 555, 1185
BsmI GAATGC 1 cut(s) 805
Bso31I GGTCTC 2 cut(s) 712, 742
BsoBI CYCGRG 1 cut(s) 240
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 7 cut(s) 28, 287, 565, 608, 689, 1140, 1272
Bsp19I CCATGG 1 cut(s) 667
BspACI CCGC 4 cut(s) 4, 542, 782, 1452
BspCNI CTCAG 3 cut(s) 334, 592, 1150
BspLI GGNNCC 2 cut(s) 786, 820
BspMI ACCTGC 1 cut(s) 1212
BspPI GGATC 3 cut(s) 295, 573, 1135
BspQI GCTCTTC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 208
BspTNI GGTCTC 2 cut(s) 712, 742
BsrFI RCCGGY 1 cut(s) 912
BsrI ACTGG 4 cut(s) 35, 311, 840, 1058
BssAI RCCGGY 1 cut(s) 912
BssECI CCNNGG 4 cut(s) 63, 156, 667, 1119
BssMI GATC 7 cut(s) 28, 287, 565, 608, 689, 1140, 1272
BssT1I CCWWGG 2 cut(s) 156, 667
Bst2UI CCWGG 3 cut(s) 852, 909, 984
Bst4CI ACNGT 1 cut(s) 1116
Bst6I CTCTTC 5 cut(s) 108, 114, 120, 401, 1030
BstAPI GCANNNNNTGC 1 cut(s) 1385
BstBI TTCGAA 1 cut(s) 208
BstC8I GCNNGC 4 cut(s) 914, 951, 1215, 1219
BstDEI CTNAG 4 cut(s) 321, 600, 1092, 1137
BstDSI CCRYGG 2 cut(s) 667, 1119
BstENI CCTNNNNNAGG 1 cut(s) 726
BstF5I GGATG 3 cut(s) 76, 394, 1405
BstKTI GATC 7 cut(s) 31, 290, 568, 611, 692, 1143, 1275
BstMAI GTCTC 3 cut(s) 178, 712, 742
BstMBI GATC 7 cut(s) 28, 287, 565, 608, 689, 1140, 1272
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 6 cut(s) 377, 913, 922, 1063, 1156, 1385
BstNI CCWGG 3 cut(s) 852, 909, 984
BstNSI RCATGY 1 cut(s) 1285
BstSCI CCNGG 3 cut(s) 850, 907, 982
BstV1I GCAGC 1 cut(s) 1066
BstV2I GAAGAC 1 cut(s) 996
BstX2I RGATCY 2 cut(s) 689, 1140
BstYI RGATCY 2 cut(s) 689, 1140
BsuI GTATCC 1 cut(s) 74
BtgI CCRYGG 2 cut(s) 667, 1119
BtrI CACGTC 1 cut(s) 1178
BtsCI GGATG 3 cut(s) 76, 394, 1405
BveI ACCTGC 1 cut(s) 1212
Cac8I GCNNGC 4 cut(s) 914, 951, 1215, 1219
CaiI CAGNNNCTG 1 cut(s) 367
Cfr10I RCCGGY 1 cut(s) 912
Cfr13I GGNCC 6 cut(s) 243, 299, 378, 819, 905, 923
CsiI ACCWGGT 2 cut(s) 850, 982
Csp6I GTAC 2 cut(s) 172, 1061
CviAII CATG 4 cut(s) 668, 698, 1282, 1333
CviQI GTAC 2 cut(s) 172, 1061
DdeI CTNAG 4 cut(s) 321, 600, 1092, 1137
DpnI GATC 7 cut(s) 30, 289, 567, 610, 691, 1142, 1274
DpnII GATC 7 cut(s) 28, 287, 565, 608, 689, 1140, 1272
EaeI YGGCCR 2 cut(s) 910, 1449
Eam1104I CTCTTC 5 cut(s) 108, 114, 120, 401, 1030
EarI CTCTTC 5 cut(s) 108, 114, 120, 401, 1030
Ecl136II GAGCTC 1 cut(s) 411
Eco130I CCWWGG 2 cut(s) 156, 667
Eco147I AGGCCT 1 cut(s) 1213
Eco24I GRGCYC 1 cut(s) 413
Eco31I GGTCTC 2 cut(s) 712, 742
Eco47I GGWCC 1 cut(s) 819
Eco53kI GAGCTC 1 cut(s) 411
Eco57I CTGAAG 2 cut(s) 555, 614
Eco88I CYCGRG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 411
EcoNI CCTNNNNNAGG 1 cut(s) 726
EcoRI GAATTC 1 cut(s) 994
EcoRII CCWGG 3 cut(s) 850, 907, 982
EcoT14I CCWWGG 2 cut(s) 156, 667
EcoT22I ATGCAT 2 cut(s) 807, 1161
EcoT38I GRGCYC 1 cut(s) 413
ErhI CCWWGG 2 cut(s) 156, 667
FaeI CATG 4 cut(s) 671, 701, 1285, 1336
FaqI GGGAC 2 cut(s) 555, 1185
FatI CATG 4 cut(s) 667, 697, 1281, 1332
FauNDI CATATG 1 cut(s) 801
FbaI TGATCA 1 cut(s) 1272
FblI GTMKAC 2 cut(s) 419, 658
Fnu4HI GCNGC 2 cut(s) 1055, 1452
FokI GGATG 3 cut(s) 83, 381, 1412
FriOI GRGCYC 1 cut(s) 413
FseI GGCCGGCC 1 cut(s) 916
Fsp4HI GCNGC 2 cut(s) 1055, 1452
FspBI CTAG 5 cut(s) 375, 510, 873, 920, 1413
GluI GCNGC 2 cut(s) 1055, 1452
GsaI CCCAGC 1 cut(s) 364
HapII CCGG 1 cut(s) 913
Hin1II CATG 4 cut(s) 671, 701, 1285, 1336
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 5 cut(s) 24, 59, 584, 869, 1250
HpaII CCGG 1 cut(s) 913
Hpy166II GTNNAC 4 cut(s) 420, 635, 659, 1119
Hpy188I TCNGA 9 cut(s) 64, 324, 535, 594, 601, 1050, 1140, 1277, 1359
Hpy188III TCNNGA 6 cut(s) 335, 677, 707, 737, 767, 873
Hpy8I GTNNAC 4 cut(s) 420, 635, 659, 1119
Hpy99I CGWCG 2 cut(s) 1036, 1325
HpyAV CCTTC 6 cut(s) 204, 220, 224, 312, 948, 1098
HpyCH4III ACNGT 1 cut(s) 1116
HpyCH4IV ACGT 4 cut(s) 1031, 1177, 1323, 1444
HpyF10VI GCNNNNNNNGC 6 cut(s) 377, 913, 922, 1063, 1156, 1385
HpyF3I CTNAG 4 cut(s) 321, 600, 1092, 1137
HpySE526I ACGT 4 cut(s) 1031, 1177, 1323, 1444
Hsp92II CATG 4 cut(s) 671, 701, 1285, 1336
KroI GCCGGC 1 cut(s) 912
KroNI GCCGGC 1 cut(s) 914
Ksp22I TGATCA 1 cut(s) 1272
Kzo9I GATC 7 cut(s) 28, 287, 565, 608, 689, 1140, 1272
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 4 cut(s) 148, 273, 544, 559
Lsp1109I GCAGC 1 cut(s) 1066
LweI GCATC 4 cut(s) 373, 380, 529, 936
MabI ACCWGGT 2 cut(s) 850, 982
MaeI CTAG 5 cut(s) 375, 510, 873, 920, 1413
MaeII ACGT 4 cut(s) 1031, 1177, 1323, 1444
MaeIII GTNAC 4 cut(s) 581, 1185, 1289, 1328
MalI GATC 7 cut(s) 30, 289, 567, 610, 691, 1142, 1274
MboI GATC 7 cut(s) 28, 287, 565, 608, 689, 1140, 1272
MflI RGATCY 2 cut(s) 689, 1140
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 6 cut(s) 280, 330, 468, 994, 1304, 1383
MlyI GAGTC 3 cut(s) 68, 578, 863
MmeI TCCRAC 2 cut(s) 333, 1322
Mph1103I ATGCAT 2 cut(s) 807, 1161
MroNI GCCGGC 1 cut(s) 912
MroXI GAANNNNTTC 2 cut(s) 204, 1353
MseI TTAA 2 cut(s) 471, 501
MspI CCGG 1 cut(s) 913
MspR9I CCNGG 3 cut(s) 852, 909, 984
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 3 cut(s) 852, 909, 984
MwoI GCNNNNNNNGC 6 cut(s) 377, 913, 922, 1063, 1156, 1385
NaeI GCCGGC 1 cut(s) 914
NcoI CCATGG 1 cut(s) 667
NdeI CATATG 1 cut(s) 801
NdeII GATC 7 cut(s) 28, 287, 565, 608, 689, 1140, 1272
NgoMIV GCCGGC 1 cut(s) 912
NlaIII CATG 4 cut(s) 671, 701, 1285, 1336
NlaIV GGNNCC 2 cut(s) 786, 820
NmuCI GTSAC 3 cut(s) 581, 1185, 1328
NsiI ATGCAT 2 cut(s) 807, 1161
NspI RCATGY 1 cut(s) 1285
NspV TTCGAA 1 cut(s) 208
PceI AGGCCT 1 cut(s) 1213
PciI ACATGT 1 cut(s) 1281
PciSI GCTCTTC 1 cut(s) 401
PcsI WCGNNNNNNNCGW 1 cut(s) 574
PctI GAATGC 1 cut(s) 805
PdiI GCCGGC 1 cut(s) 914
PdmI GAANNNNTTC 2 cut(s) 204, 1353
PfeI GAWTC 2 cut(s) 24, 1250
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 2 cut(s) 1056, 1453
Ple19I CGATCG 1 cut(s) 31
PleI GAGTC 3 cut(s) 67, 578, 863
PpsI GAGTC 3 cut(s) 67, 578, 863
PscI ACATGT 1 cut(s) 1281
PshBI ATTAAT 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 413
Psp1406I AACGTT 1 cut(s) 1444
Psp6I CCWGG 3 cut(s) 850, 907, 982
PspFI CCCAGC 1 cut(s) 360
PspGI CCWGG 3 cut(s) 850, 907, 982
PspN4I GGNNCC 2 cut(s) 786, 820
PspPI GGNCC 6 cut(s) 243, 299, 378, 819, 905, 923
PstNI CAGNNNCTG 1 cut(s) 367
PsuI RGATCY 2 cut(s) 689, 1140
PvuI CGATCG 1 cut(s) 31
RigI GGCCGGCC 1 cut(s) 916
RsaI GTAC 2 cut(s) 173, 1062
RsaNI GTAC 2 cut(s) 172, 1061
SacI GAGCTC 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 401
SaqAI TTAA 2 cut(s) 471, 501
SatI GCNGC 2 cut(s) 1055, 1452
Sau3AI GATC 7 cut(s) 28, 287, 565, 608, 689, 1140, 1272
Sau96I GGNCC 6 cut(s) 243, 299, 378, 819, 905, 923
SchI GAGTC 3 cut(s) 68, 578, 863
ScrFI CCNGG 3 cut(s) 852, 909, 984
SduI GDGCHC 1 cut(s) 413
SexAI ACCWGGT 2 cut(s) 850, 982
SfaNI GCATC 4 cut(s) 373, 380, 529, 936
SfiI GGCCNNNNNGGCC 2 cut(s) 913, 922
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 819
SmlI CTYRAG 2 cut(s) 176, 1478
SmoI CTYRAG 2 cut(s) 176, 1478
Sse9I AATT 6 cut(s) 280, 330, 468, 994, 1304, 1383
SseBI AGGCCT 1 cut(s) 1213
SsiI CCGC 4 cut(s) 4, 542, 782, 1452
SspMI CTAG 5 cut(s) 375, 510, 873, 920, 1413
SstI GAGCTC 1 cut(s) 413
StuI AGGCCT 1 cut(s) 1213
StyD4I CCNGG 3 cut(s) 850, 907, 982
StyI CCWWGG 2 cut(s) 156, 667
TaaI ACNGT 1 cut(s) 1116
TaiI ACGT 4 cut(s) 1034, 1180, 1326, 1447
TaqI TCGA 4 cut(s) 27, 31, 208, 577
TasI AATT 6 cut(s) 280, 330, 468, 994, 1304, 1383
TatI WGTACW 1 cut(s) 1060
TauI GCSGC 1 cut(s) 1454
TfiI GAWTC 2 cut(s) 24, 1250
Tru1I TTAA 2 cut(s) 471, 501
Tru9I TTAA 2 cut(s) 471, 501
TseFI GTSAC 3 cut(s) 581, 1185, 1328
TseI GCWGC 1 cut(s) 1054
Tsp45I GTSAC 3 cut(s) 581, 1185, 1328
TspDTI ATGAA 6 cut(s) 120, 126, 233, 686, 786, 1416
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 819
VspI ATTAAT 1 cut(s) 471
XagI CCTNNNNNAGG 1 cut(s) 726
XapI RAATTY 2 cut(s) 994, 1304
XbaI TCTAGA 1 cut(s) 872
XceI RCATGY 1 cut(s) 1285
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmiI GTMKAC 2 cut(s) 419, 658
XmnI GAANNNNTTC 2 cut(s) 204, 1353
XspI CTAG 5 cut(s) 375, 510, 873, 920, 1413
Zsp2I ATGCAT 2 cut(s) 807, 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.