RLG00000017756

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003861
Physical Location & Seq
Reverse (-)
20851994 .. 20854961
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017756

Sequence Viewer

Length: 1572 bp
ATGCGGGGATATGATACCCAGAGATTCGATCGACCAGTTGAGGACTATGATGAATATGAGTCCGAGGGGGATGGATATGGATACGAGGAGGAAGGAGATGAATATGAAGATGAAGAGGAAGAGGAAGAAGAAGAAGCCCCAAAACCTACCAAGGAAGCATTGGAGTACCTTGAGTTGAGACAACGCTTGAAAGAACAAGTTCGAAGGCAGATGAAGAAGAAGGAAGGTGGTTCTCGGGCCAACTCCAATGATAGAAAGAAGCTCCCCTATGATAATTTTGGATCGTTCTTTGGCCCTTCTCAACCAGTTATCGCTCAGAGAGTAATTCAAGAAAGCAAGTCGTTATTGGAAACCCAGCATCTGGCATCTAGGGCCACAAACTCTGTCCATCCTAACAAGAAGAGCTCTGGGTCTACCTCTGGTGGCTCTAAATCTGTTGCACATAACCCAAAACCCAAAGTAATTAATGAGCAAAAAAATAAACTCCAAAAGCTTAAAGACACTAGAGATTACTCATTTTTATTATCTGAAGATGCGGAGCTTCCTGCTCCTGCAAAGGATCGTCCCCCTCGAAGTGACTCTGCTCTGAAGTCTGAGGTGCGATCAAGTCAAACAATGGCAAAAAGTAAACAACCTTTGCCAAATAATGGTAGACCTGTCCATGGTGGTCATGATAATGGTAGACCTGTTCATGGCAATCGTGATAATGGGAGACCTGTTCATGGAAGTCGTGAGAATGGGAGACCTGTTCATGGCAGTCGTGAGAATGGGAGACCTGTTCAGGGCAGTCGTGAGAATGGGAGACCTGTTCAAGGCAGTCGTGAGAATGGGAGACCTGTTCAGTCTGGTCGTGATGAAAGGAAAGCGGTTCCTACTAATGGACATACGCATTCTAAAGTTGGGTCCAATAGGCCAAGTTCTGCCAGTAGCCGACCTGGTTCAACATCAATGGACTCTAGAAAACAACTTGGTAGCAACAATGCAAATGGGCCTGGCCGGCCTTTAGGGCCAAAAGGTCTGCCTTCAAAGATGCCGGCTTCTACCACAGAGAGGAGGGCTTCTGCACCAGGTTTGAAGAATTCCCTGTCTTCTTTGCAGAAAGCACCCTCTTCAAAGTCGCAGTCATCTGTTCAGAGGCAGCCAGTAGAGCAAAGAAAAGAAGTACGAGAACCTTCTAAGCCCAATATGTTATCAAAACAGTCCATGGGACTGTCAAAACCTCAGATCCACAAGCCACAAATGCATAAGCAAATCCCATCACGTCCTATGTCACAAGAGTATCGTCCCAAAAAAAGGCCTGCAAGCAGGTTTGCAGATGATGAGTATGACCCTGAATCGGGGGATATTAGTAGTATGATCAGAAACATGTTTGGTTACAATCCAAATAAATTTGCTGATGACGATGACGTTAGTGACATGGAGGCAGGATTTGAAGATATTCAGAGGGAGGAGAGGAGAAGTGCAAAAATTGCAAGACAGGAGGATGAAGAACAAGCTAGGTTGATAGAAGAAGAAGAAAGGAGGGAACGTTTGGCCGCCAAGATGAGAAAACAGAAGAAGCTCAAGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

524

Amino Acids

58.8

Weight (kDa)

9.58

Isoelectric Point (pI)

68.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 421 - 510 9.3e-19 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1296
AccB7I CCANNNNNTGG 2 cut(s) 361, 647
AccI GTMKAC 3 cut(s) 413, 652, 682
AciI CCGC 4 cut(s) 4, 536, 866, 1536
AclI AACGTT 1 cut(s) 1528
AclWI GGATC 3 cut(s) 289, 567, 1219
AcoI YGGCCR 2 cut(s) 994, 1533
AcsI RAATTY 2 cut(s) 1078, 1388
AcuI CTGAAG 2 cut(s) 549, 608
AfaI GTAC 2 cut(s) 167, 1164
AflIII ACRYGT 1 cut(s) 1365
AgsI TTSAA 8 cut(s) 190, 329, 812, 942, 1026, 1075, 1113, 1433
AjiI CACGTC 1 cut(s) 1262
AjnI CCWGG 3 cut(s) 934, 991, 1066
AluBI AGCT 6 cut(s) 262, 405, 493, 541, 1496, 1561
AluI AGCT 6 cut(s) 262, 405, 493, 541, 1496, 1561
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 6 cut(s) 172, 706, 736, 766, 796, 826
AlwI GGATC 3 cut(s) 289, 567, 1219
AlwNI CAGNNNCTG 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 1138
ApoI RAATTY 2 cut(s) 1078, 1388
ArsI GACNNNNNNTTYG 2 cut(s) 1106, 1138
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 2 cut(s) 198, 1437
AspS9I GGNCC 6 cut(s) 237, 293, 372, 903, 989, 1007
AsuII TTCGAA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 234
AvaII GGWCC 1 cut(s) 903
BaeI ACNNNNGTAYC 2 cut(s) 1262, 1295
BanII GRGCYC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 1080
Bbv12I GWGCWC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 1150
BccI CCATC 3 cut(s) 65, 396, 1264
BciT130I CCWGG 3 cut(s) 936, 993, 1068
BciVI GTATCC 1 cut(s) 74
BclI TGATCA 1 cut(s) 1356
BcoDI GTCTC 6 cut(s) 172, 706, 736, 766, 796, 826
BfaI CTAG 4 cut(s) 369, 504, 957, 1497
BfuAI ACCTGC 1 cut(s) 1296
BfuI GTATCC 1 cut(s) 74
BglI GCCNNNNNGGC 2 cut(s) 997, 1006
BisI GCNGC 2 cut(s) 1139, 1536
BlsI GCNGC 2 cut(s) 1140, 1537
Bme1390I CCNGG 3 cut(s) 936, 993, 1068
Bme18I GGWCC 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 234
BmgBI CACGTC 1 cut(s) 1262
BmgT120I GGNCC 6 cut(s) 237, 293, 372, 903, 989, 1007
BmiI GGNNCC 2 cut(s) 870, 904
BmrFI CCNGG 3 cut(s) 936, 993, 1068
BmsI GCATC 4 cut(s) 367, 374, 523, 1020
BpiI GAAGAC 1 cut(s) 1080
Bpu14I TTCGAA 1 cut(s) 202
BpuEI CTTGAG 2 cut(s) 191, 1547
BsaI GGTCTC 5 cut(s) 706, 736, 766, 796, 826
BsaJI CCNNGG 4 cut(s) 63, 150, 661, 1203
BsaXI ACNNNNNCTCC 2 cut(s) 1513, 1543
Bse118I RCCGGY 2 cut(s) 996, 1033
Bse1I ACTGG 4 cut(s) 35, 305, 924, 1142
BseBI CCWGG 3 cut(s) 936, 993, 1068
BseDI CCNNGG 4 cut(s) 63, 150, 661, 1203
BseGI GGATG 3 cut(s) 76, 388, 1489
BseMII CTCAG 3 cut(s) 329, 585, 1235
BseNI ACTGG 4 cut(s) 35, 305, 924, 1142
BseRI GAGGAG 4 cut(s) 101, 1066, 1463, 1468
BseXI GCAGC 1 cut(s) 1150
BseYI CCCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 1047
Bsh1285I CGRYCG 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 2 cut(s) 997, 1034
BslFI GGGAC 3 cut(s) 549, 1221, 1269
BsmAI GTCTC 6 cut(s) 172, 706, 736, 766, 796, 826
BsmFI GGGAC 3 cut(s) 549, 1221, 1269
BsmI GAATGC 1 cut(s) 889
Bso31I GGTCTC 5 cut(s) 706, 736, 766, 796, 826
BsoBI CYCGRG 1 cut(s) 234
Bsp119I TTCGAA 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 6 cut(s) 28, 281, 559, 602, 1224, 1356
Bsp19I CCATGG 2 cut(s) 661, 1203
BspACI CCGC 4 cut(s) 4, 536, 866, 1536
BspCNI CTCAG 3 cut(s) 328, 586, 1234
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 870, 904
BspMI ACCTGC 1 cut(s) 1296
BspPI GGATC 3 cut(s) 289, 567, 1219
BspQI GCTCTTC 1 cut(s) 395
BspT104I TTCGAA 1 cut(s) 202
BspTNI GGTCTC 5 cut(s) 706, 736, 766, 796, 826
BsrFI RCCGGY 2 cut(s) 996, 1033
BsrI ACTGG 4 cut(s) 35, 305, 924, 1142
BssAI RCCGGY 2 cut(s) 996, 1033
BssECI CCNNGG 4 cut(s) 63, 150, 661, 1203
BssMI GATC 6 cut(s) 28, 281, 559, 602, 1224, 1356
BssT1I CCWWGG 3 cut(s) 150, 661, 1203
Bst2UI CCWGG 3 cut(s) 936, 993, 1068
Bst4CI ACNGT 2 cut(s) 1200, 1212
Bst6I CTCTTC 4 cut(s) 108, 114, 395, 1114
BstAPI GCANNNNNTGC 1 cut(s) 1469
BstBI TTCGAA 1 cut(s) 202
BstC8I GCNNGC 4 cut(s) 998, 1035, 1299, 1303
BstDEI CTNAG 4 cut(s) 315, 594, 1176, 1221
BstDSI CCRYGG 2 cut(s) 661, 1203
BstENI CCTNNNNNAGG 1 cut(s) 810
BstF5I GGATG 3 cut(s) 76, 388, 1489
BstKTI GATC 6 cut(s) 31, 284, 562, 605, 1227, 1359
BstMAI GTCTC 6 cut(s) 172, 706, 736, 766, 796, 826
BstMBI GATC 6 cut(s) 28, 281, 559, 602, 1224, 1356
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 6 cut(s) 371, 997, 1006, 1147, 1240, 1469
BstNI CCWGG 3 cut(s) 936, 993, 1068
BstNSI RCATGY 1 cut(s) 1369
BstSCI CCNGG 3 cut(s) 934, 991, 1066
BstV1I GCAGC 1 cut(s) 1150
BstV2I GAAGAC 1 cut(s) 1080
BstX2I RGATCY 1 cut(s) 1224
BstYI RGATCY 1 cut(s) 1224
BsuI GTATCC 1 cut(s) 74
BtgI CCRYGG 2 cut(s) 661, 1203
BtrI CACGTC 1 cut(s) 1262
BtsCI GGATG 3 cut(s) 76, 388, 1489
BveI ACCTGC 1 cut(s) 1296
Cac8I GCNNGC 4 cut(s) 998, 1035, 1299, 1303
CaiI CAGNNNCTG 1 cut(s) 361
CciI TCATGA 1 cut(s) 670
Cfr10I RCCGGY 2 cut(s) 996, 1033
Cfr13I GGNCC 6 cut(s) 237, 293, 372, 903, 989, 1007
CsiI ACCWGGT 2 cut(s) 934, 1066
Csp6I GTAC 2 cut(s) 166, 1163
CviAII CATG 8 cut(s) 662, 671, 692, 722, 752, 1204, 1366, 1417
CviQI GTAC 2 cut(s) 166, 1163
DdeI CTNAG 4 cut(s) 315, 594, 1176, 1221
DpnI GATC 6 cut(s) 30, 283, 561, 604, 1226, 1358
DpnII GATC 6 cut(s) 28, 281, 559, 602, 1224, 1356
EaeI YGGCCR 2 cut(s) 994, 1533
Eam1104I CTCTTC 4 cut(s) 108, 114, 395, 1114
EarI CTCTTC 4 cut(s) 108, 114, 395, 1114
Ecl136II GAGCTC 1 cut(s) 405
Eco130I CCWWGG 3 cut(s) 150, 661, 1203
Eco147I AGGCCT 1 cut(s) 1297
Eco24I GRGCYC 1 cut(s) 407
Eco31I GGTCTC 5 cut(s) 706, 736, 766, 796, 826
Eco47I GGWCC 1 cut(s) 903
Eco53kI GAGCTC 1 cut(s) 405
Eco57I CTGAAG 2 cut(s) 549, 608
Eco88I CYCGRG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 810
EcoRI GAATTC 1 cut(s) 1078
EcoRII CCWGG 3 cut(s) 934, 991, 1066
EcoT14I CCWWGG 3 cut(s) 150, 661, 1203
EcoT22I ATGCAT 1 cut(s) 1245
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 3 cut(s) 150, 661, 1203
FaeI CATG 8 cut(s) 665, 674, 695, 725, 755, 1207, 1369, 1420
FaqI GGGAC 3 cut(s) 549, 1221, 1269
FatI CATG 8 cut(s) 661, 670, 691, 721, 751, 1203, 1365, 1416
FbaI TGATCA 1 cut(s) 1356
FblI GTMKAC 3 cut(s) 413, 652, 682
Fnu4HI GCNGC 2 cut(s) 1139, 1536
FokI GGATG 3 cut(s) 83, 375, 1496
FriOI GRGCYC 1 cut(s) 407
FseI GGCCGGCC 1 cut(s) 1000
Fsp4HI GCNGC 2 cut(s) 1139, 1536
FspBI CTAG 4 cut(s) 369, 504, 957, 1497
GluI GCNGC 2 cut(s) 1139, 1536
GsaI CCCAGC 1 cut(s) 358
HapII CCGG 2 cut(s) 997, 1034
Hin1II CATG 8 cut(s) 665, 674, 695, 725, 755, 1207, 1369, 1420
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 5 cut(s) 24, 59, 578, 953, 1334
HpaII CCGG 2 cut(s) 997, 1034
Hpy166II GTNNAC 4 cut(s) 414, 629, 653, 683
Hpy188I TCNGA 9 cut(s) 64, 318, 529, 588, 595, 1134, 1224, 1361, 1443
Hpy188III TCNNGA 9 cut(s) 329, 671, 701, 731, 761, 791, 821, 851, 957
Hpy8I GTNNAC 4 cut(s) 414, 629, 653, 683
HpyAV CCTTC 7 cut(s) 86, 198, 214, 218, 306, 1032, 1182
HpyCH4III ACNGT 2 cut(s) 1200, 1212
HpyCH4IV ACGT 3 cut(s) 1261, 1407, 1528
HpyF10VI GCNNNNNNNGC 6 cut(s) 371, 997, 1006, 1147, 1240, 1469
HpyF3I CTNAG 4 cut(s) 315, 594, 1176, 1221
HpySE526I ACGT 3 cut(s) 1261, 1407, 1528
Hsp92II CATG 8 cut(s) 665, 674, 695, 725, 755, 1207, 1369, 1420
KroI GCCGGC 2 cut(s) 996, 1033
KroNI GCCGGC 2 cut(s) 998, 1035
Ksp22I TGATCA 1 cut(s) 1356
Kzo9I GATC 6 cut(s) 28, 281, 559, 602, 1224, 1356
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 3 cut(s) 267, 538, 553
Lsp1109I GCAGC 1 cut(s) 1150
LweI GCATC 4 cut(s) 367, 374, 523, 1020
MabI ACCWGGT 2 cut(s) 934, 1066
MaeI CTAG 4 cut(s) 369, 504, 957, 1497
MaeII ACGT 3 cut(s) 1261, 1407, 1528
MaeIII GTNAC 4 cut(s) 575, 1269, 1373, 1412
MalI GATC 6 cut(s) 30, 283, 561, 604, 1226, 1358
MboI GATC 6 cut(s) 28, 281, 559, 602, 1224, 1356
MflI RGATCY 1 cut(s) 1224
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 6 cut(s) 274, 324, 462, 1078, 1388, 1467
MlyI GAGTC 3 cut(s) 68, 572, 947
Mph1103I ATGCAT 1 cut(s) 1245
MroNI GCCGGC 2 cut(s) 996, 1033
MroXI GAANNNNTTC 2 cut(s) 198, 1437
MseI TTAA 2 cut(s) 465, 495
MslI CAYNNNNRTG 1 cut(s) 675
MspI CCGG 2 cut(s) 997, 1034
MspR9I CCNGG 3 cut(s) 936, 993, 1068
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 3 cut(s) 936, 993, 1068
MwoI GCNNNNNNNGC 6 cut(s) 371, 997, 1006, 1147, 1240, 1469
NaeI GCCGGC 2 cut(s) 998, 1035
NcoI CCATGG 2 cut(s) 661, 1203
NdeII GATC 6 cut(s) 28, 281, 559, 602, 1224, 1356
NgoMIV GCCGGC 2 cut(s) 996, 1033
NlaIII CATG 8 cut(s) 665, 674, 695, 725, 755, 1207, 1369, 1420
NlaIV GGNNCC 2 cut(s) 870, 904
NmuCI GTSAC 3 cut(s) 575, 1269, 1412
NsiI ATGCAT 1 cut(s) 1245
NspI RCATGY 1 cut(s) 1369
NspV TTCGAA 1 cut(s) 202
PagI TCATGA 1 cut(s) 670
PceI AGGCCT 1 cut(s) 1297
PciI ACATGT 1 cut(s) 1365
PciSI GCTCTTC 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 568
PctI GAATGC 1 cut(s) 889
PdiI GCCGGC 2 cut(s) 998, 1035
PdmI GAANNNNTTC 2 cut(s) 198, 1437
PfeI GAWTC 2 cut(s) 24, 1334
PflMI CCANNNNNTGG 2 cut(s) 361, 647
PkrI GCNGC 2 cut(s) 1140, 1537
Ple19I CGATCG 1 cut(s) 31
PleI GAGTC 3 cut(s) 67, 572, 947
PpsI GAGTC 3 cut(s) 67, 572, 947
PscI ACATGT 1 cut(s) 1365
PshBI ATTAAT 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 1528
Psp6I CCWGG 3 cut(s) 934, 991, 1066
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 3 cut(s) 934, 991, 1066
PspN4I GGNNCC 2 cut(s) 870, 904
PspPI GGNCC 6 cut(s) 237, 293, 372, 903, 989, 1007
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 1224
PvuI CGATCG 1 cut(s) 31
RigI GGCCGGCC 1 cut(s) 1000
RsaI GTAC 2 cut(s) 167, 1164
RsaNI GTAC 2 cut(s) 166, 1163
RseI CAYNNNNRTG 1 cut(s) 675
SacI GAGCTC 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 2 cut(s) 465, 495
SatI GCNGC 2 cut(s) 1139, 1536
Sau3AI GATC 6 cut(s) 28, 281, 559, 602, 1224, 1356
Sau96I GGNCC 6 cut(s) 237, 293, 372, 903, 989, 1007
SchI GAGTC 3 cut(s) 68, 572, 947
ScrFI CCNGG 3 cut(s) 936, 993, 1068
SduI GDGCHC 1 cut(s) 407
SexAI ACCWGGT 2 cut(s) 934, 1066
SfaNI GCATC 4 cut(s) 367, 374, 523, 1020
SfiI GGCCNNNNNGGCC 2 cut(s) 997, 1006
SfuI TTCGAA 1 cut(s) 202
SinI GGWCC 1 cut(s) 903
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 2 cut(s) 170, 1562
SmoI CTYRAG 2 cut(s) 170, 1562
Sse9I AATT 6 cut(s) 274, 324, 462, 1078, 1388, 1467
SseBI AGGCCT 1 cut(s) 1297
SsiI CCGC 4 cut(s) 4, 536, 866, 1536
SspMI CTAG 4 cut(s) 369, 504, 957, 1497
SstI GAGCTC 1 cut(s) 407
StuI AGGCCT 1 cut(s) 1297
StyD4I CCNGG 3 cut(s) 934, 991, 1066
StyI CCWWGG 3 cut(s) 150, 661, 1203
TaaI ACNGT 2 cut(s) 1200, 1212
TaiI ACGT 3 cut(s) 1264, 1410, 1531
TaqI TCGA 4 cut(s) 27, 31, 202, 571
TasI AATT 6 cut(s) 274, 324, 462, 1078, 1388, 1467
TauI GCSGC 1 cut(s) 1538
TfiI GAWTC 2 cut(s) 24, 1334
Tru1I TTAA 2 cut(s) 465, 495
Tru9I TTAA 2 cut(s) 465, 495
TseFI GTSAC 3 cut(s) 575, 1269, 1412
TseI GCWGC 1 cut(s) 1138
Tsp45I GTSAC 3 cut(s) 575, 1269, 1412
Van91I CCANNNNNTGG 2 cut(s) 361, 647
VpaK11BI GGWCC 1 cut(s) 903
VspI ATTAAT 1 cut(s) 465
XagI CCTNNNNNAGG 1 cut(s) 810
XapI RAATTY 2 cut(s) 1078, 1388
XbaI TCTAGA 1 cut(s) 956
XceI RCATGY 1 cut(s) 1369
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 3 cut(s) 413, 652, 682
XmnI GAANNNNTTC 2 cut(s) 198, 1437
XspI CTAG 4 cut(s) 369, 504, 957, 1497
Zsp2I ATGCAT 1 cut(s) 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.