FvH4_1g18820

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003861
Physical Location & Seq
Reverse (-)
11106473 .. 11110407
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18820.t2

Sequence Viewer

Length: 1674 bp
ATGGGCTATGAATCATATGATAGACAGAGACACGATCGACGAGTTGAGGAGTATGATGATTATGAGTATGAGGGGGATGGATATGGGTACGAGGAGGAAGGGGATGAGTATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGATGCTCCAAGACCTACCAAGGAAGCATTGGAGTTTCTTGAGTTGAGACAACGGTTGAAAGAACAGATACGGAGGGATATGAAGAGGAAGGAAGGTGGTCGGGGCAACTCCGATGATAGGAAGAAGCTCCCCTATGATAAGAGTTTTGGATCATTCTTTGGCCCTTCTCAACCAGTTATCGCTGATAGAGTAATCCAAGAAAGCAAGTCGTTATTGGAAACCCGGCATCTGGCATCTAGGGCCACAAACTCTGTCCATCCTAACAAGAAGAACTCTGGGTCTACCTCTTCTGGCTCTAAACCTGTTGCACATACCCAGAAACCCAATGTCATTAATGAGCAAAAAAATATAGTCCAAAAGCGTAAGGATACTAGAGATTACGCATTTTTATTTTCTGAAGATGCGGAGCTTCCTGCTCCTGCAAAGGATCGTCCCCCTCGAAGTGACTCTGCTCCAACATCTGAGGTGCGATCAAGTCAAACAGTGATGAAAAGTAAACAACCTTTGGTAAATAATAGTAGACCTCTCCATGGCGGTCAGGATAATGGTAGATCTATTCATGGTCGTGATAGTGGTAGACCTGTTCAAGGCAGTCGTGACAATGGTAGGCCTGTTCATGGCAGTCGTGATAGTGGGAGGCCTGTTCAAGGCAGTCGTGACAGTGGGAGGCCTGTTCAAGGCAGTCGTGACAGTGGGAGGCCTGTTCAAGGCAGTCGTGACAGTGGGAGGCCTGTTCAAGGCAGTCGTGAAAATGGGAGGCCAGTTCATGGAAGTCATGACAATGGGAGACCTGTTATGTCTGGTCATGATGAAAGGAAAGCAATTCCTACAAATGGACATATGCATTCTAAAGTTGGGTCCAATAGGCCGAGTTCTGCCAGTAGCAGACCTGGCTCAACATCAATGGACTCTAGAAAACAACTGGGTAGCAACAACGCTAATGGCCCTGGACGGCCCCTCGTGCCAAAAGGTCTCCCTTCAAAGATGCCGGCCTCTACCTTAGAGAGGAGGGTTTCTGCACCTGGTTTGAAGAATAACATGTCTTCATTGCAGAAAGCACCCTCTTCAAAGTCGCAGTCTTCTCTTCTGAAGCAGCCACTACAGCAAAGAAAGGATGTACGAGAACCTTATAAGCCCAGTATGTTATCAAAACAGTCCACAGGATTATCAAAACATCAGATCCACAAGCCGCAAATGCATAAGCAAGTCCCATCACGTCCTATGTCACAAGAGTATCGTCCCAAAAAAAGGCCTGCAAGTGGGTTTGCAGACGATGAGTATGACCCTGAGGATGGGGATATTAGTAGTATGATCAGAAACATGTTTGGTTACAATCCAAATAAATTTGCTGATGACGATGATGTCAGTGACATGGAGGCAGGATTTGAAGATATTCAGAGGGAGGAGAGGAGAAGTGCAAAAATTGCAAGAATGGAGGATGAAGAACAAGCTAGGTTGATAGAAGAAGAAGAAAGGAGGGAACGTTTGGCCGCCAAGATGAGAAAACAGAAGAAGCTGAAGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

558

Amino Acids

62.76

Weight (kDa)

9.33

Isoelectric Point (pI)

75.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 473 - 563 2.8e-18 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1278
AasI GACNNNNNNGTC 1 cut(s) 1508
AccB7I CCANNNNNTGG 1 cut(s) 914
AccI GTMKAC 3 cut(s) 428, 667, 724
AciI CCGC 5 cut(s) 551, 681, 1337, 1638, 1669
AclI AACGTT 1 cut(s) 1630
AclWI GGATC 3 cut(s) 304, 582, 1321
AcoI YGGCCR 1 cut(s) 1635
AcsI RAATTY 1 cut(s) 1490
AcuI CTGAAG 2 cut(s) 564, 1256
AfaI GTAC 2 cut(s) 89, 1266
AflIII ACRYGT 2 cut(s) 1185, 1467
AjiI CACGTC 1 cut(s) 1364
AjnI CCWGG 3 cut(s) 1036, 1093, 1168
AluBI AGCT 4 cut(s) 274, 556, 1598, 1663
AluI AGCT 4 cut(s) 274, 556, 1598, 1663
Alw26I GTCTC 4 cut(s) 22, 187, 928, 1124
AlwI GGATC 3 cut(s) 304, 582, 1321
ApeKI GCWGC 1 cut(s) 1240
ApoI RAATTY 1 cut(s) 1490
ArsI GACNNNNNNTTYG 2 cut(s) 1208, 1240
AseI ATTAAT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 1539
AspS9I GGNCC 5 cut(s) 308, 387, 1005, 1091, 1101
AsuC2I CCSGG 1 cut(s) 370
AvaII GGWCC 1 cut(s) 1005
AxyI CCTNAGG 1 cut(s) 1434
BaeI ACNNNNGTAYC 2 cut(s) 1364, 1397
BauI CACGAG 1 cut(s) 1106
BbsI GAAGAC 2 cut(s) 1182, 1218
BbvI GCAGC 1 cut(s) 1252
BccI CCATC 4 cut(s) 71, 411, 1366, 1433
BceAI ACGGC 1 cut(s) 1115
BciT130I CCWGG 3 cut(s) 1038, 1095, 1170
BciVI GTATCC 1 cut(s) 508
BclI TGATCA 1 cut(s) 1458
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 4 cut(s) 22, 187, 928, 1124
BfaI CTAG 4 cut(s) 384, 519, 1059, 1599
BfmI CTRYAG 1 cut(s) 1247
BfuI GTATCC 1 cut(s) 508
BglII AGATCT 1 cut(s) 698
BisI GCNGC 3 cut(s) 1241, 1337, 1638
BlsI GCNGC 3 cut(s) 1242, 1338, 1639
Bme1390I CCNGG 4 cut(s) 370, 1038, 1095, 1170
Bme18I GGWCC 1 cut(s) 1005
BmgBI CACGTC 1 cut(s) 1364
BmgT120I GGNCC 5 cut(s) 308, 387, 1005, 1091, 1101
BmiI GGNNCC 2 cut(s) 1006, 1103
BmrFI CCNGG 4 cut(s) 370, 1038, 1095, 1170
BmrI ACTGGG 2 cut(s) 1079, 1278
BmsI GCATC 5 cut(s) 139, 382, 389, 538, 1122
BmuI ACTGGG 2 cut(s) 1079, 1278
BpiI GAAGAC 2 cut(s) 1182, 1218
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 370
BsaI GGTCTC 2 cut(s) 928, 1124
BsaJI CCNNGG 3 cut(s) 165, 676, 1093
BsaXI ACNNNNNCTCC 2 cut(s) 1615, 1645
Bse118I RCCGGY 1 cut(s) 1135
Bse1I ACTGG 5 cut(s) 320, 908, 1026, 1074, 1284
Bse21I CCTNAGG 1 cut(s) 1434
Bse3DI GCAATG 1 cut(s) 1193
BseBI CCWGG 3 cut(s) 1038, 1095, 1170
BseDI CCNNGG 3 cut(s) 165, 676, 1093
BseGI GGATG 6 cut(s) 82, 109, 403, 1267, 1444, 1591
BseMI GCAATG 1 cut(s) 1193
BseMII CTCAG 2 cut(s) 600, 1425
BseNI ACTGG 5 cut(s) 320, 908, 1026, 1074, 1284
BseRI GAGGAG 5 cut(s) 62, 107, 1168, 1565, 1570
BseXI GCAGC 1 cut(s) 1252
BsgI GTGCAG 1 cut(s) 1149
Bsh1285I CGRYCG 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 370, 1136
BslFI GGGAC 3 cut(s) 564, 1340, 1371
BsmAI GTCTC 4 cut(s) 22, 187, 928, 1124
BsmFI GGGAC 3 cut(s) 564, 1340, 1371
BsmI GAATGC 1 cut(s) 991
Bso31I GGTCTC 2 cut(s) 928, 1124
Bsp143I GATC 7 cut(s) 34, 296, 574, 617, 698, 1326, 1458
Bsp19I CCATGG 1 cut(s) 676
BspACI CCGC 5 cut(s) 551, 681, 1337, 1638, 1669
BspCNI CTCAG 2 cut(s) 601, 1426
BspHI TCATGA 2 cut(s) 922, 952
BspLI GGNNCC 2 cut(s) 1006, 1103
BspPI GGATC 3 cut(s) 304, 582, 1321
BspTNI GGTCTC 2 cut(s) 928, 1124
BsrDI GCAATG 1 cut(s) 1193
BsrFI RCCGGY 1 cut(s) 1135
BsrI ACTGG 5 cut(s) 320, 908, 1026, 1074, 1284
BssAI RCCGGY 1 cut(s) 1135
BssECI CCNNGG 3 cut(s) 165, 676, 1093
BssMI GATC 7 cut(s) 34, 296, 574, 617, 698, 1326, 1458
BssSI CACGAG 1 cut(s) 1106
BssT1I CCWWGG 2 cut(s) 165, 676
Bst2BI CACGAG 1 cut(s) 1106
Bst2UI CCWGG 3 cut(s) 1038, 1095, 1170
Bst4CI ACNGT 6 cut(s) 201, 631, 809, 839, 869, 1302
Bst6I CTCTTC 5 cut(s) 135, 224, 439, 1216, 1236
BstAPI GCANNNNNTGC 1 cut(s) 1571
BstC8I GCNNGC 2 cut(s) 1137, 1401
BstDEI CTNAG 3 cut(s) 609, 1147, 1434
BstDSI CCRYGG 1 cut(s) 676
BstENI CCTNNNNNAGG 6 cut(s) 732, 792, 822, 852, 882, 1150
BstF5I GGATG 6 cut(s) 82, 109, 403, 1267, 1444, 1591
BstKTI GATC 7 cut(s) 37, 299, 577, 620, 701, 1329, 1461
BstMAI GTCTC 4 cut(s) 22, 187, 928, 1124
BstMBI GATC 7 cut(s) 34, 296, 574, 617, 698, 1326, 1458
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 6 cut(s) 386, 1038, 1108, 1249, 1342, 1571
BstNI CCWGG 3 cut(s) 1038, 1095, 1170
BstNSI RCATGY 2 cut(s) 1189, 1471
BstSCI CCNGG 4 cut(s) 368, 1036, 1093, 1168
BstSFI CTRYAG 1 cut(s) 1247
BstV1I GCAGC 1 cut(s) 1252
BstV2I GAAGAC 2 cut(s) 1182, 1218
BstX2I RGATCY 2 cut(s) 698, 1326
BstYI RGATCY 2 cut(s) 698, 1326
Bsu36I CCTNAGG 1 cut(s) 1434
BsuI GTATCC 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 676
BtrI CACGTC 1 cut(s) 1364
BtsCI GGATG 6 cut(s) 82, 109, 403, 1267, 1444, 1591
BtsIMutI CAGTG 5 cut(s) 636, 814, 844, 874, 1519
Cac8I GCNNGC 2 cut(s) 1137, 1401
CciI TCATGA 2 cut(s) 922, 952
Cfr10I RCCGGY 1 cut(s) 1135
Cfr13I GGNCC 5 cut(s) 308, 387, 1005, 1091, 1101
CsiI ACCWGGT 1 cut(s) 1168
Csp6I GTAC 2 cut(s) 88, 1265
CviAII CATG 9 cut(s) 677, 707, 764, 914, 923, 953, 1186, 1468, 1519
CviQI GTAC 2 cut(s) 88, 1265
DdeI CTNAG 3 cut(s) 609, 1147, 1434
DpnI GATC 7 cut(s) 36, 298, 576, 619, 700, 1328, 1460
DpnII GATC 7 cut(s) 34, 296, 574, 617, 698, 1326, 1458
DrdI GACNNNNNNGTC 1 cut(s) 1508
DseDI GACNNNNNNGTC 1 cut(s) 1508
EaeI YGGCCR 1 cut(s) 1635
Eam1104I CTCTTC 5 cut(s) 135, 224, 439, 1216, 1236
EarI CTCTTC 5 cut(s) 135, 224, 439, 1216, 1236
Eco130I CCWWGG 2 cut(s) 165, 676
Eco147I AGGCCT 6 cut(s) 757, 787, 817, 847, 877, 1399
Eco31I GGTCTC 2 cut(s) 928, 1124
Eco47I GGWCC 1 cut(s) 1005
Eco57I CTGAAG 2 cut(s) 564, 1256
Eco81I CCTNAGG 1 cut(s) 1434
EcoNI CCTNNNNNAGG 6 cut(s) 732, 792, 822, 852, 882, 1150
EcoRII CCWGG 3 cut(s) 1036, 1093, 1168
EcoT14I CCWWGG 2 cut(s) 165, 676
EcoT22I ATGCAT 2 cut(s) 993, 1347
ErhI CCWWGG 2 cut(s) 165, 676
FaeI CATG 9 cut(s) 680, 710, 767, 917, 926, 956, 1189, 1471, 1522
FaqI GGGAC 3 cut(s) 564, 1340, 1371
FatI CATG 9 cut(s) 676, 706, 763, 913, 922, 952, 1185, 1467, 1518
FauNDI CATATG 2 cut(s) 16, 987
FbaI TGATCA 1 cut(s) 1458
FblI GTMKAC 3 cut(s) 428, 667, 724
Fnu4HI GCNGC 3 cut(s) 1241, 1337, 1638
FokI GGATG 6 cut(s) 89, 116, 390, 1274, 1451, 1598
Fsp4HI GCNGC 3 cut(s) 1241, 1337, 1638
FspBI CTAG 4 cut(s) 384, 519, 1059, 1599
GluI GCNGC 3 cut(s) 1241, 1337, 1638
HapII CCGG 2 cut(s) 370, 1136
Hin1II CATG 9 cut(s) 680, 710, 767, 917, 926, 956, 1189, 1471, 1522
HinfI GANTC 3 cut(s) 11, 593, 1055
HpaII CCGG 2 cut(s) 370, 1136
Hpy166II GTNNAC 5 cut(s) 429, 644, 668, 725, 1305
Hpy188I TCNGA 7 cut(s) 259, 544, 610, 1236, 1326, 1463, 1545
Hpy8I GTNNAC 5 cut(s) 429, 644, 668, 725, 1305
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 5 cut(s) 92, 229, 233, 321, 1134
HpyCH4III ACNGT 6 cut(s) 201, 631, 809, 839, 869, 1302
HpyCH4IV ACGT 2 cut(s) 1363, 1630
HpyF10VI GCNNNNNNNGC 6 cut(s) 386, 1038, 1108, 1249, 1342, 1571
HpyF3I CTNAG 3 cut(s) 609, 1147, 1434
HpySE526I ACGT 2 cut(s) 1363, 1630
Hsp92II CATG 9 cut(s) 680, 710, 767, 917, 926, 956, 1189, 1471, 1522
KroI GCCGGC 1 cut(s) 1135
KroNI GCCGGC 1 cut(s) 1137
Ksp22I TGATCA 1 cut(s) 1458
Kzo9I GATC 7 cut(s) 34, 296, 574, 617, 698, 1326, 1458
LmnI GCTCC 5 cut(s) 157, 279, 553, 568, 604
Lsp1109I GCAGC 1 cut(s) 1252
LweI GCATC 5 cut(s) 139, 382, 389, 538, 1122
MabI ACCWGGT 1 cut(s) 1168
MaeI CTAG 4 cut(s) 384, 519, 1059, 1599
MaeII ACGT 2 cut(s) 1363, 1630
MaeIII GTNAC 8 cut(s) 590, 743, 803, 833, 863, 1371, 1475, 1514
MalI GATC 7 cut(s) 36, 298, 576, 619, 700, 1328, 1460
MboI GATC 7 cut(s) 34, 296, 574, 617, 698, 1326, 1458
MflI RGATCY 2 cut(s) 698, 1326
MluCI AATT 3 cut(s) 969, 1490, 1569
MlyI GAGTC 2 cut(s) 587, 1049
MmeI TCCRAC 1 cut(s) 626
Mph1103I ATGCAT 2 cut(s) 993, 1347
MroNI GCCGGC 1 cut(s) 1135
MroXI GAANNNNTTC 1 cut(s) 1539
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 2 cut(s) 711, 927
MspI CCGG 2 cut(s) 370, 1136
MspR9I CCNGG 4 cut(s) 370, 1038, 1095, 1170
Mva1269I GAATGC 1 cut(s) 991
MvaI CCWGG 3 cut(s) 1038, 1095, 1170
MwoI GCNNNNNNNGC 6 cut(s) 386, 1038, 1108, 1249, 1342, 1571
NaeI GCCGGC 1 cut(s) 1137
NciI CCSGG 1 cut(s) 370
NcoI CCATGG 1 cut(s) 676
NdeI CATATG 2 cut(s) 16, 987
NdeII GATC 7 cut(s) 34, 296, 574, 617, 698, 1326, 1458
NgoMIV GCCGGC 1 cut(s) 1135
NlaIII CATG 9 cut(s) 680, 710, 767, 917, 926, 956, 1189, 1471, 1522
NlaIV GGNNCC 2 cut(s) 1006, 1103
NmeAIII GCCGAG 1 cut(s) 1041
NmuCI GTSAC 7 cut(s) 590, 743, 803, 833, 863, 1371, 1514
NsiI ATGCAT 2 cut(s) 993, 1347
NspI RCATGY 2 cut(s) 1189, 1471
PagI TCATGA 2 cut(s) 922, 952
PceI AGGCCT 6 cut(s) 757, 787, 817, 847, 877, 1399
PciI ACATGT 2 cut(s) 1185, 1467
PcsI WCGNNNNNNNCGW 1 cut(s) 583
PctI GAATGC 1 cut(s) 991
PdiI GCCGGC 1 cut(s) 1137
PdmI GAANNNNTTC 1 cut(s) 1539
PfeI GAWTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 914
PkrI GCNGC 3 cut(s) 1242, 1338, 1639
Ple19I CGATCG 1 cut(s) 37
PleI GAGTC 2 cut(s) 587, 1049
PpsI GAGTC 2 cut(s) 587, 1049
PscI ACATGT 2 cut(s) 1185, 1467
PshBI ATTAAT 1 cut(s) 480
PsiI TTATAA 1 cut(s) 1278
Psp1406I AACGTT 1 cut(s) 1630
Psp6I CCWGG 3 cut(s) 1036, 1093, 1168
PspGI CCWGG 3 cut(s) 1036, 1093, 1168
PspN4I GGNNCC 2 cut(s) 1006, 1103
PspPI GGNCC 5 cut(s) 308, 387, 1005, 1091, 1101
PsuI RGATCY 2 cut(s) 698, 1326
PvuI CGATCG 1 cut(s) 37
RsaI GTAC 2 cut(s) 89, 1266
RsaNI GTAC 2 cut(s) 88, 1265
RseI CAYNNNNRTG 2 cut(s) 711, 927
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 3 cut(s) 1241, 1337, 1638
Sau3AI GATC 7 cut(s) 34, 296, 574, 617, 698, 1326, 1458
Sau96I GGNCC 5 cut(s) 308, 387, 1005, 1091, 1101
SchI GAGTC 2 cut(s) 587, 1049
ScrFI CCNGG 4 cut(s) 370, 1038, 1095, 1170
SexAI ACCWGGT 1 cut(s) 1168
SfaNI GCATC 5 cut(s) 139, 382, 389, 538, 1122
SfcI CTRYAG 1 cut(s) 1247
SinI GGWCC 1 cut(s) 1005
SmiMI CAYNNNNRTG 2 cut(s) 711, 927
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 969, 1490, 1569
SseBI AGGCCT 6 cut(s) 757, 787, 817, 847, 877, 1399
SsiI CCGC 5 cut(s) 551, 681, 1337, 1638, 1669
SspMI CTAG 4 cut(s) 384, 519, 1059, 1599
StuI AGGCCT 6 cut(s) 757, 787, 817, 847, 877, 1399
StyD4I CCNGG 4 cut(s) 368, 1036, 1093, 1168
StyI CCWWGG 2 cut(s) 165, 676
TaaI ACNGT 6 cut(s) 201, 631, 809, 839, 869, 1302
TaiI ACGT 2 cut(s) 1366, 1633
TaqI TCGA 2 cut(s) 37, 586
TasI AATT 3 cut(s) 969, 1490, 1569
TauI GCSGC 2 cut(s) 1339, 1640
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 5 cut(s) 636, 814, 844, 874, 1519
TseFI GTSAC 7 cut(s) 590, 743, 803, 833, 863, 1371, 1514
TseI GCWGC 1 cut(s) 1240
Tsp45I GTSAC 7 cut(s) 590, 743, 803, 833, 863, 1371, 1514
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 5 cut(s) 636, 814, 844, 874, 1519
Van91I CCANNNNNTGG 1 cut(s) 914
VpaK11BI GGWCC 1 cut(s) 1005
VspI ATTAAT 1 cut(s) 480
XagI CCTNNNNNAGG 6 cut(s) 732, 792, 822, 852, 882, 1150
XapI RAATTY 1 cut(s) 1490
XbaI TCTAGA 1 cut(s) 1058
XceI RCATGY 2 cut(s) 1189, 1471
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 3 cut(s) 428, 667, 724
XmnI GAANNNNTTC 1 cut(s) 1539
XspI CTAG 4 cut(s) 384, 519, 1059, 1599
Zsp2I ATGCAT 2 cut(s) 993, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.