AT2G23093

Sugar-tranasporters, 12 TM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007474
Physical Location & Seq
Forward (+)
9832032 .. 9834739
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23093.1

Sequence Viewer

Length: 1350 bp
ATGGGTGTCGTTATTGAGACCTTTATTTGGGAACCAAGCTCAAGCTTCTTCATCTTCTTCTTCGTTTCCACATTTTTATCGATATCTCTGTTTCCTTACTTGGCCAAAAACAGAACTTTTGGTAGCTTTGATCATTCTATTTCCTCTTCTTTCGCTCGGTTCCAGAGATGGTTTCTAGCTATCTACACTCTCTCTTCAGTGATGGAAGGTTTATTGTCAGTGTATGGAGAATTGGAGTTAACAACTTATGGCTTAAGTAAAGAATCAATGGTGTTTTATCTCTGTGTTGGTTATTCGACCGCTCTTGTTCTTGGTCCTGTACTTGGTGTGGTTTCTGATCTCATAGGTCAGAAGAAAATTTGTCTACTCTATTGTGTCTTGCACCTTATTGTTGGTGTGTGGAAGAGGATTACAATGAGTCCTAGTGCTTGGTTTGCAAATGTTTTTCTCTCCCTTGCTGGTCTTGTATATTCATTTGGGTTTGAGACTTGGCTTGTTGTGGAACATGAAAAGCAAAGTCAGAGGAATGACTCGTTAAATGAGACATTCTGGTTGATGACTTTTCTTGAGTCTGCATCTTTAATTGGAGGTCAAGTTCTTGCAAATTGGCTTGTGGGTGAAAATGTTCAGGATGGGATTGCATTATCTGCTACGGCGTCTCTGCTCTTGTCTGTTGTGACTATTATTTGTATTGTCCAGACTGCAAAAGAGCCGTTGAAGACCCTTCCGTTTAGGGATTATTCCACAGCTTTCTATGCGTATGTTCTTGGTGACAAAAGAATATGGTTTCTGGGAACTTCACAAGCCTGTCTTCAGTTTTCCACTGCAGTCTTTTGGATTCTGTGGGCACCAACAATAGTGGCTGATGGGCGTGAAGTGAATCTGGGATTGATATATCCATGTTTCTTGGGTTCAAGAATGCTTGGGAGTACTGTATTCCCATGGCTAATGAGTGGACAATCATTGCTCCGGCTTGAAGATTGCTTAGTCTACATATACGCACTACTTGGGATAGTGTTTTCTATAGTAGCCTATGATTATCAGGAAATCCGAATCTTAGTAGTACTTTTCTGCTTATTTCATGGCTTTGCTGGACTGGCACTTCCTTTGCTTGCAAGATTAAGAACAATGTATGTACCAAATGAATTGCGTGGAGGGATGATAAGCCTCTCTCAAGTTCCAGCCAATGCAGCTATTTTGTTTTTCTTAATCCAGAGAGGCTACTCTAACAAGATCGAGAACTCAACAATGATGGCTCTTGGTGCCATTTCTTTATTCACTGCATCTGGTTGTATATATATGTTGAGACGATGGGGAAAGTCACCACACCATGATTGGCACAAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_5

Protein Analysis

449

Amino Acids

50.4

Weight (kDa)

7.55

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_5 PF05631 47 - 341 6.8e-23 Sugar-tranasporters, 12 TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 847, 1262
AccBSI CCGCTC 1 cut(s) 302
AccI GTMKAC 2 cut(s) 364, 990
AciI CCGC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 357
AcuI CTGAAG 2 cut(s) 180, 797
AcyI GRCGYC 1 cut(s) 656
AfaI GTAC 4 cut(s) 321, 931, 1065, 1137
AfiI CCNNNNNNNGG 2 cut(s) 27, 323
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 3 cut(s) 718, 915, 977
AloI GAACNNNNNNTCC 2 cut(s) 579, 611
AluBI AGCT 6 cut(s) 39, 45, 126, 179, 749, 1193
AluI AGCT 6 cut(s) 39, 45, 126, 179, 749, 1193
Alw26I GTCTC 5 cut(s) 11, 479, 536, 663, 1300
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 1190
ApoI RAATTY 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 624
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 3 cut(s) 629, 782, 1314
AvaII GGWCC 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 850
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 2 cut(s) 847, 1262
BbsI GAAGAC 2 cut(s) 725, 803
BbvI GCAGC 1 cut(s) 1202
BccI CCATC 6 cut(s) 162, 196, 626, 860, 1246, 1305
BceAI ACGGC 2 cut(s) 669, 697
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 5 cut(s) 11, 479, 536, 663, 1300
BfaI CTAG 2 cut(s) 176, 423
BfmI CTRYAG 2 cut(s) 825, 1023
BfrI CTTAAG 1 cut(s) 253
BisI GCNGC 1 cut(s) 1191
BlsI GCNGC 1 cut(s) 1192
BmcAI AGTACT 2 cut(s) 931, 1065
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 4 cut(s) 33, 161, 849, 1264
BmsI GCATC 2 cut(s) 584, 1292
BpiI GAAGAC 2 cut(s) 725, 803
BpuEI CTTGAG 3 cut(s) 25, 587, 1158
Bsa29I ATCGAT 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 941
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 323
Bse1I ACTGG 1 cut(s) 1101
Bse3DI GCAATG 1 cut(s) 962
BseCI ATCGAT 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 941
BseGI GGATG 2 cut(s) 637, 1164
BseLI CCNNNNNNNGG 2 cut(s) 27, 323
BseMI GCAATG 1 cut(s) 962
BseNI ACTGG 1 cut(s) 1101
BseSI GKGCMC 1 cut(s) 850
BseXI GCAGC 1 cut(s) 1202
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 2 cut(s) 847, 1262
BshVI ATCGAT 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 300
BsiSI CCGG 1 cut(s) 970
BslI CCNNNNNNNGG 2 cut(s) 27, 323
BsmAI GTCTC 5 cut(s) 11, 479, 536, 663, 1300
BsmBI CGTCTC 2 cut(s) 663, 1300
BsmI GAATGC 1 cut(s) 924
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 850
Bsp143I GATC 3 cut(s) 130, 337, 1233
Bsp19I CCATGG 1 cut(s) 941
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 104
BspDI ATCGAT 1 cut(s) 80
BspLI GGNNCC 4 cut(s) 33, 161, 849, 1264
BspMAI CTGCAG 1 cut(s) 829
BspT107I GGYRCC 2 cut(s) 847, 1262
BspTI CTTAAG 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 962
BsrI ACTGG 1 cut(s) 1101
BssECI CCNNGG 1 cut(s) 941
BssMI GATC 3 cut(s) 130, 337, 1233
BssNI GRCGYC 1 cut(s) 656
BssT1I CCWWGG 1 cut(s) 941
Bst4CI ACNGT 1 cut(s) 934
Bst6I CTCTTC 3 cut(s) 151, 199, 398
BstACI GRCGYC 1 cut(s) 656
BstAFI CTTAAG 1 cut(s) 253
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 1113
BstDEI CTNAG 2 cut(s) 985, 1057
BstDSI CCRYGG 1 cut(s) 941
BstF5I GGATG 2 cut(s) 637, 1164
BstKTI GATC 3 cut(s) 133, 340, 1236
BstMAI GTCTC 5 cut(s) 11, 479, 536, 663, 1300
BstMBI GATC 3 cut(s) 130, 337, 1233
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 6 cut(s) 434, 647, 755, 1097, 1190, 1262
BstSFI CTRYAG 2 cut(s) 825, 1023
BstSLI GKGCMC 1 cut(s) 850
BstV1I GCAGC 1 cut(s) 1202
BstV2I GAAGAC 2 cut(s) 725, 803
Bsu15I ATCGAT 1 cut(s) 80
BsuRI GGCC 1 cut(s) 104
BsuTUI ATCGAT 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 941
BtsCI GGATG 2 cut(s) 637, 1164
BtsI GCAGTG 2 cut(s) 822, 1278
BtsIMutI CAGTG 4 cut(s) 204, 225, 822, 1278
Cac8I GCNNGC 1 cut(s) 1113
Cfr13I GGNCC 1 cut(s) 314
ClaI ATCGAT 1 cut(s) 80
CseI GACGC 1 cut(s) 645
Csp6I GTAC 4 cut(s) 320, 930, 1064, 1136
CspCI CAANNNNNGTGG 2 cut(s) 840, 875
CviAII CATG 5 cut(s) 506, 900, 942, 1082, 1331
CviQI GTAC 4 cut(s) 320, 930, 1064, 1136
DdeI CTNAG 2 cut(s) 985, 1057
DpnI GATC 3 cut(s) 132, 339, 1235
DpnII GATC 3 cut(s) 130, 337, 1233
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 3 cut(s) 151, 199, 398
EarI CTCTTC 3 cut(s) 151, 199, 398
Eco130I CCWWGG 1 cut(s) 941
Eco31I GGTCTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 2 cut(s) 180, 797
EcoRV GATATC 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 941
ErhI CCWWGG 1 cut(s) 941
Esp3I CGTCTC 2 cut(s) 663, 1300
FaeI CATG 5 cut(s) 509, 903, 945, 1085, 1334
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FatI CATG 5 cut(s) 505, 899, 941, 1081, 1330
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 2 cut(s) 364, 990
Fnu4HI GCNGC 1 cut(s) 1191
FokI GGATG 2 cut(s) 644, 1171
Fsp4HI GCNGC 1 cut(s) 1191
FspBI CTAG 2 cut(s) 176, 423
GluI GCNGC 1 cut(s) 1191
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 970
HgaI GACGC 1 cut(s) 645
Hin1I GRCGYC 1 cut(s) 656
Hin1II CATG 5 cut(s) 509, 903, 945, 1085, 1334
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 7 cut(s) 263, 418, 530, 569, 838, 880, 1053
HpaI GTTAAC 1 cut(s) 240
HpaII CCGG 1 cut(s) 970
HphI GGTGA 3 cut(s) 629, 782, 1314
Hpy166II GTNNAC 4 cut(s) 240, 365, 956, 991
Hpy188I TCNGA 4 cut(s) 337, 351, 522, 1052
Hpy188III TCNNGA 8 cut(s) 163, 566, 629, 697, 915, 1043, 1213, 1237
Hpy8I GTNNAC 4 cut(s) 240, 365, 956, 991
HpyAV CCTTC 2 cut(s) 200, 734
HpyCH4III ACNGT 1 cut(s) 934
HpyF10VI GCNNNNNNNGC 6 cut(s) 434, 647, 755, 1097, 1190, 1262
HpyF3I CTNAG 2 cut(s) 985, 1057
Hsp92I GRCGYC 1 cut(s) 656
Hsp92II CATG 5 cut(s) 509, 903, 945, 1085, 1334
Ksp22I TGATCA 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 130, 337, 1233
LmnI GCTCC 1 cut(s) 972
Lsp1109I GCAGC 1 cut(s) 1202
LweI GCATC 2 cut(s) 584, 1292
MaeI CTAG 2 cut(s) 176, 423
MaeIII GTNAC 3 cut(s) 676, 770, 1320
MalI GATC 3 cut(s) 132, 339, 1235
MbiI CCGCTC 1 cut(s) 302
MboI GATC 3 cut(s) 130, 337, 1233
MhlI GDGCHC 1 cut(s) 850
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 6 cut(s) 230, 357, 582, 604, 1145, 1343
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 3 cut(s) 427, 524, 578
MnlI CCTC 7 cut(s) 154, 399, 516, 581, 1148, 1178, 1211
Mox20I TGGCCA 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 624
MscI TGGCCA 1 cut(s) 104
MseI TTAA 6 cut(s) 239, 254, 536, 581, 1121, 1208
Msp20I TGGCCA 1 cut(s) 104
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 1 cut(s) 970
Mva1269I GAATGC 1 cut(s) 924
MwoI GCNNNNNNNGC 6 cut(s) 434, 647, 755, 1097, 1190, 1262
NcoI CCATGG 1 cut(s) 941
NdeII GATC 3 cut(s) 130, 337, 1233
NlaIII CATG 5 cut(s) 509, 903, 945, 1085, 1334
NlaIV GGNNCC 4 cut(s) 33, 161, 849, 1264
NmuCI GTSAC 3 cut(s) 676, 770, 1320
PctI GAATGC 1 cut(s) 924
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 4 cut(s) 263, 838, 880, 1053
PkrI GCNGC 1 cut(s) 1192
PleI GAGTC 3 cut(s) 426, 524, 577
PpsI GAGTC 3 cut(s) 426, 524, 577
PspN4I GGNNCC 4 cut(s) 33, 161, 849, 1264
PspPI GGNCC 1 cut(s) 314
PstI CTGCAG 1 cut(s) 829
RsaI GTAC 4 cut(s) 321, 931, 1065, 1137
RsaNI GTAC 4 cut(s) 320, 930, 1064, 1136
SaqAI TTAA 6 cut(s) 239, 254, 536, 581, 1121, 1208
SatI GCNGC 1 cut(s) 1191
Sau3AI GATC 3 cut(s) 130, 337, 1233
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 2 cut(s) 931, 1065
SchI GAGTC 3 cut(s) 427, 524, 578
SduI GDGCHC 1 cut(s) 850
SfaNI GCATC 2 cut(s) 584, 1292
SfcI CTRYAG 2 cut(s) 825, 1023
SinI GGWCC 1 cut(s) 314
SmlI CTYRAG 4 cut(s) 40, 253, 566, 1173
SmoI CTYRAG 4 cut(s) 40, 253, 566, 1173
Sse9I AATT 6 cut(s) 230, 357, 582, 604, 1145, 1343
SsiI CCGC 1 cut(s) 300
SspMI CTAG 2 cut(s) 176, 423
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 1 cut(s) 934
TaqI TCGA 3 cut(s) 80, 296, 1236
TasI AATT 6 cut(s) 230, 357, 582, 604, 1145, 1343
TatI WGTACW 3 cut(s) 319, 929, 1063
TfiI GAWTC 4 cut(s) 263, 838, 880, 1053
Tru1I TTAA 6 cut(s) 239, 254, 536, 581, 1121, 1208
Tru9I TTAA 6 cut(s) 239, 254, 536, 581, 1121, 1208
TscAI CASTG 4 cut(s) 204, 225, 829, 1285
TseFI GTSAC 3 cut(s) 676, 770, 1320
TseI GCWGC 1 cut(s) 1190
Tsp45I GTSAC 3 cut(s) 676, 770, 1320
TspDTI ATGAA 5 cut(s) 40, 462, 522, 1070, 1158
TspGWI ACGGA 1 cut(s) 717
TspRI CASTG 4 cut(s) 204, 225, 829, 1285
Vha464I CTTAAG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 1 cut(s) 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 1332
XmiI GTMKAC 2 cut(s) 364, 990
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 2 cut(s) 176, 423
ZrmI AGTACT 2 cut(s) 931, 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.