Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007474

Physical Location & Seq

Genomic Coordinates Reverse (-)

19136228 .. 19140785

Gene Structure 4558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCGGTGGTGATTGAGAGCTCCGTTTGGGAACCGAGCCCCGCGCTTTACATCTTCATCTTCTTCGCCTGCCTCTTCTCGATTCTCTTCTTCCCTTACGCCTCCGGCAGCACCAACAGCACCTCCGCCGCGAAAGCTGCTCCGTCTCTGTTCGACCATGGAGTCTCCCCCACCGCTTCGTCTTTTCGGTTCCAGAGGAACTTCCTGCTTCTCTATTCTCTCGCCTCAGTTATGGAAGGACTGTGGTCGGTGTTCGGCGAAGTTGAGCTAGCTTACTACGGATTAAGCAAAGAGAAAATGGTGCTTTATCTCTGCGTAGGGCTTGCGGCTTCGATTTCTATCGGTTCTTTCTTAGGAGTACTTTCTGATTTAATAGGTCCAAAGAAAGTTTGCTTCTTCTTTTGCTTTCTACACCTCCTTGTTGGCTTGTTGAAGAGAATCGTCCCTCATTCGAGTGTTTGGGTGGCGAGTATTTGTTTGTCAATCACAAGTTCAGTTTTTTCTTTCGGTTTCGAGACGTGGATGGTAGTTCAACATGAAGAGCAAGGGCACAGGCAAGATATGCTGAAGAGAAGTATGGCGTCTCATTCCACTGCAGCTATCTTCTTGGCAGTAATAAGCTTAGTCTGTCTCACCAAGGGATGGAAAGAAATCCCACATAAAGTAGCTCTTAAGGAGTATAGGGCATCTTTTCGTGCATACATTGTTGGCGATAAAAGAGTATGGCTTTTGGCATGGGCACAAGCTTGCCTTCACTTCTCTGTTGCAGTATTCTGGATACTATGGGCCCCAACAATAGTGGCTGATGGACGAGAAGTGCACCTAGGGTTGATATATCCATGTTTTCTTGGATCAAGAATGCTTGGAAGCACAGTATTCCCATGGCTCATTAGTGGACTGTCATCCCTTAGAACTGATGATTGCCTAGTATATGCATTCATTGTACTGGGGCTAGTAATGTCCATAACAGCTTATGATTATCAGGAAGTTGGGATGCTAGTGACACTATTTTGCATATTTCATGCCGGCCTTGGTGTGGTTTTGCCTTCACTTGCCAGATTGAGAACCATGTATGTGCCTAATGCACTGCGTGGAGGGATGATAAGCCTTTCTCAAGCCCCCGCAAATGCAGCAATTCTGCTTTTTCTGGTGCAAGTAAGTGTTTCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

390

Amino Acids

43.02

Weight (kDa)

8.63

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_5	PF05631	63 - 197	3e-13	Sugar-tranasporters, 12 TM
MFS_5	PF05631	195 - 321	4.1e-07	Sugar-tranasporters, 12 TM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23093 AT2G23093
fragaria_vesca	FvH4_1g17220
malus_domestica	MD02G1182200.v1.1 MD15G1293400.v1.1
prunus_persica	Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1
pyrus_communis	pycom02g14760 pycom15g25640
rosa_chinensis	RchiOBHm_Chr2g0107371
rosa_laevigata	RLG00000017574
rosa_multiflora	Rmu_sc0010952.1_g000011
rosa_roxburghii	Rroxscaffold_2G00136390
rosa_rugosa	Rorug02G0142700 Rorug02G0142800 Rorug02G0142800 Rorug02G0142900
rosa_samantha	Rh2AG193200 Rh2BG205500 Rh2CG198500 Rh2DG200500
rosa_wichuraiana	Rw2G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	642
AccII	CGCG	2 cut(s)	44, 131
AciI	CCGC	7 cut(s)	5, 42, 126, 129, 174, 326, 1122
AclWI	GGATC	1 cut(s)	859
AcuI	CTGAAG	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	581
AdeI	CACNNNGTG	1 cut(s)	1091
AfaI	GTAC	2 cut(s)	360, 945
AfiI	CCNNNNNNNGG	2 cut(s)	642, 1036
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	2 cut(s)	433, 533
AjiI	CACGTC	1 cut(s)	519
AluBI	AGCT	9 cut(s)	21, 137, 268, 272, 599, 621, 668, 746, 971
AluI	AGCT	9 cut(s)	21, 137, 268, 272, 599, 621, 668, 746, 971
Alw21I	GWGCWC	2 cut(s)	23, 822
Alw26I	GTCTC	5 cut(s)	150, 169, 509, 588, 635
Alw44I	GTGCAC	1 cut(s)	818
AlwI	GGATC	1 cut(s)	859
AoxI	GGCC	2 cut(s)	786, 1027
ApaI	GGGCCC	1 cut(s)	790
ApaLI	GTGCAC	1 cut(s)	818
ApeKI	GCWGC	4 cut(s)	108, 137, 596, 1130
AspA2I	CCTAGG	1 cut(s)	823
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	3 cut(s)	377, 786, 787
AsuHPI	GGTGA	2 cut(s)	22, 625
AsuNHI	GCTAGC	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	377
AvrII	CCTAGG	1 cut(s)	823
BaeGI	GKGCMC	4 cut(s)	552, 742, 790, 822
BanII	GRGCYC	3 cut(s)	23, 41, 790
Bbv12I	GWGCWC	2 cut(s)	23, 822
BbvI	GCAGC	4 cut(s)	120, 124, 608, 1142
BccI	CCATC	3 cut(s)	517, 636, 800
BciVI	GTATCC	1 cut(s)	771
BcoDI	GTCTC	5 cut(s)	150, 169, 509, 588, 635
BfaI	CTAG	6 cut(s)	269, 824, 926, 953, 998, 1171
BfmI	CTRYAG	1 cut(s)	594
BfrI	CTTAAG	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	771
BisI	GCNGC	6 cut(s)	109, 129, 138, 327, 597, 1131
BlnI	CCTAGG	1 cut(s)	823
BlsI	GCNGC	6 cut(s)	110, 130, 139, 328, 598, 1132
BmcAI	AGTACT	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	519
BmgT120I	GGNCC	3 cut(s)	377, 786, 787
BmiI	GGNNCC	4 cut(s)	33, 191, 788, 789
BmrI	ACTGGG	1 cut(s)	956
BmsI	GCATC	2 cut(s)	695, 984
BmtI	GCTAGC	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	956
BoxI	GACNNNNGTC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	1098
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	581
BsaJI	CCNNGG	5 cut(s)	157, 636, 823, 881, 1030
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	642, 1036
Bse118I	RCCGGY	1 cut(s)	1025
Bse1I	ACTGG	1 cut(s)	951
Bse8I	GATNNNNATC	1 cut(s)	338
BseDI	CCNNGG	5 cut(s)	157, 636, 823, 881, 1030
BseGI	GGATG	5 cut(s)	528, 647, 902, 999, 1104
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	642, 1036
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	951
BseSI	GKGCMC	4 cut(s)	552, 742, 790, 822
BseXI	GCAGC	4 cut(s)	120, 124, 608, 1142
Bsh1236I	CGCG	2 cut(s)	44, 131
BshFI	GGCC	2 cut(s)	788, 1029
BsiHKAI	GWGCWC	2 cut(s)	23, 822
BsiSI	CCGG	2 cut(s)	105, 1026
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	642, 1036
BsmAI	GTCTC	5 cut(s)	150, 169, 509, 588, 635
BsmBI	CGTCTC	3 cut(s)	150, 509, 588
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	2 cut(s)	864, 935
BsnI	GGCC	2 cut(s)	788, 1029
Bsp120I	GGGCCC	1 cut(s)	786
Bsp1286I	GDGCHC	6 cut(s)	23, 41, 552, 742, 790, 822
Bsp143I	GATC	1 cut(s)	851
Bsp19I	CCATGG	2 cut(s)	157, 881
BspACI	CCGC	7 cut(s)	5, 42, 126, 129, 174, 326, 1122
BspANI	GGCC	2 cut(s)	788, 1029
BspCNI	CTCAG	1 cut(s)	239
BspFNI	CGCG	2 cut(s)	44, 131
BspLI	GGNNCC	4 cut(s)	33, 191, 788, 789
BspMAI	CTGCAG	1 cut(s)	598
BspOI	GCTAGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	859
BspQI	GCTCTTC	1 cut(s)	534
BspTI	CTTAAG	1 cut(s)	671
BsrFI	RCCGGY	1 cut(s)	1025
BsrI	ACTGG	1 cut(s)	951
BssAI	RCCGGY	1 cut(s)	1025
BssECI	CCNNGG	5 cut(s)	157, 636, 823, 881, 1030
BssMI	GATC	1 cut(s)	851
BssNI	GRCGYC	1 cut(s)	581
BssT1I	CCWWGG	5 cut(s)	157, 636, 823, 881, 1030
Bst4CI	ACNGT	3 cut(s)	243, 874, 900
Bst6I	CTCTTC	5 cut(s)	80, 92, 428, 534, 563
BstACI	GRCGYC	1 cut(s)	581
BstAFI	CTTAAG	1 cut(s)	671
BstAPI	GCANNNNNTGC	1 cut(s)	562
BstC8I	GCNNGC	5 cut(s)	70, 270, 324, 748, 1027
BstDEI	CTNAG	4 cut(s)	226, 352, 622, 908
BstDSI	CCRYGG	2 cut(s)	157, 881
BstF5I	GGATG	5 cut(s)	528, 647, 902, 999, 1104
BstFNI	CGCG	2 cut(s)	44, 131
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	854
BstMAI	GTCTC	5 cut(s)	150, 169, 509, 588, 635
BstMBI	GATC	1 cut(s)	851
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 134, 137, 562, 1130
BstPAI	GACNNNNGTC	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	4 cut(s)	552, 742, 790, 822
BstUI	CGCG	2 cut(s)	44, 131
BstV1I	GCAGC	4 cut(s)	120, 124, 608, 1142
BsuI	GTATCC	1 cut(s)	771
BsuRI	GGCC	2 cut(s)	788, 1029
BtgI	CCRYGG	2 cut(s)	157, 881
BtrI	CACGTC	1 cut(s)	519
BtsCI	GGATG	5 cut(s)	528, 647, 902, 999, 1104
BtsI	GCAGTG	2 cut(s)	591, 1085
BtsIMutI	CAGTG	2 cut(s)	591, 1085
Cac8I	GCNNGC	5 cut(s)	70, 270, 324, 748, 1027
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	1025
Cfr13I	GGNCC	3 cut(s)	377, 786, 787
CseI	GACGC	1 cut(s)	570
Csp6I	GTAC	2 cut(s)	359, 944
CspCI	CAANNNNNGTGG	2 cut(s)	780, 815
CviAII	CATG	7 cut(s)	158, 536, 735, 840, 882, 1022, 1069
CviQI	GTAC	2 cut(s)	359, 944
DdeI	CTNAG	4 cut(s)	226, 352, 622, 908
DpnI	GATC	1 cut(s)	853
DpnII	GATC	1 cut(s)	851
DraIII	CACNNNGTG	1 cut(s)	1091
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	5 cut(s)	80, 92, 428, 534, 563
EarI	CTCTTC	5 cut(s)	80, 92, 428, 534, 563
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	5 cut(s)	157, 636, 823, 881, 1030
Eco24I	GRGCYC	3 cut(s)	23, 41, 790
Eco47I	GGWCC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	787
EcoT14I	CCWWGG	5 cut(s)	157, 636, 823, 881, 1030
EcoT22I	ATGCAT	1 cut(s)	937
EcoT38I	GRGCYC	3 cut(s)	23, 41, 790
ErhI	CCWWGG	5 cut(s)	157, 636, 823, 881, 1030
Esp3I	CGTCTC	3 cut(s)	150, 509, 588
FaeI	CATG	7 cut(s)	161, 539, 738, 843, 885, 1025, 1072
FalI	AAGNNNNNCTT	4 cut(s)	654, 686, 735, 767
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	7 cut(s)	157, 535, 734, 839, 881, 1021, 1068
FauI	CCCGC	2 cut(s)	49, 1129
Fnu4HI	GCNGC	6 cut(s)	109, 129, 138, 327, 597, 1131
FokI	GGATG	5 cut(s)	535, 654, 889, 1006, 1111
FriOI	GRGCYC	3 cut(s)	23, 41, 790
Fsp4HI	GCNGC	6 cut(s)	109, 129, 138, 327, 597, 1131
FspBI	CTAG	6 cut(s)	269, 824, 926, 953, 998, 1171
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	6 cut(s)	109, 129, 138, 327, 597, 1131
HaeIII	GGCC	2 cut(s)	788, 1029
HapII	CCGG	2 cut(s)	105, 1026
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	7 cut(s)	161, 539, 738, 843, 885, 1025, 1072
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HindIII	AAGCTT	2 cut(s)	619, 744
HinfI	GANTC	3 cut(s)	82, 162, 438
HpaII	CCGG	2 cut(s)	105, 1026
HphI	GGTGA	2 cut(s)	22, 625
Hpy166II	GTNNAC	2 cut(s)	820, 896
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	6 cut(s)	79, 193, 514, 775, 855, 983
Hpy8I	GTNNAC	2 cut(s)	820, 896
HpyAV	CCTTC	3 cut(s)	230, 761, 1056
HpyCH4III	ACNGT	3 cut(s)	243, 874, 900
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	9 cut(s)	596, 698, 767, 820, 935, 1014, 1085, 1130, 1153
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 134, 137, 562, 1130
HpyF3I	CTNAG	4 cut(s)	226, 352, 622, 908
HpySE526I	ACGT	1 cut(s)	518
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	7 cut(s)	161, 539, 738, 843, 885, 1025, 1072
HspAI	GCGC	1 cut(s)	44
KroI	GCCGGC	1 cut(s)	1025
KroNI	GCCGGC	1 cut(s)	1027
Kzo9I	GATC	1 cut(s)	851
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	2 cut(s)	26, 145
Lsp1109I	GCAGC	4 cut(s)	120, 124, 608, 1142
LweI	GCATC	2 cut(s)	695, 984
MaeI	CTAG	6 cut(s)	269, 824, 926, 953, 998, 1171
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	1000
MalI	GATC	1 cut(s)	853
MboI	GATC	1 cut(s)	851
MhlI	GDGCHC	6 cut(s)	23, 41, 552, 742, 790, 822
MluCI	AATT	1 cut(s)	1134
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	83, 112, 133, 189, 235, 425, 456, 1088
Mph1103I	ATGCAT	1 cut(s)	937
MroNI	GCCGGC	1 cut(s)	1025
MseI	TTAA	3 cut(s)	284, 371, 672
MslI	CAYNNNNRTG	2 cut(s)	453, 1073
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	2 cut(s)	105, 1026
Mva1269I	GAATGC	2 cut(s)	864, 935
MvnI	CGCG	2 cut(s)	44, 131
MwoI	GCNNNNNNNGC	5 cut(s)	117, 134, 137, 562, 1130
NaeI	GCCGGC	1 cut(s)	1027
NcoI	CCATGG	2 cut(s)	157, 881
NdeII	GATC	1 cut(s)	851
NgoMIV	GCCGGC	1 cut(s)	1025
NheI	GCTAGC	1 cut(s)	268
NlaIII	CATG	7 cut(s)	161, 539, 738, 843, 885, 1025, 1072
NlaIV	GGNNCC	4 cut(s)	33, 191, 788, 789
NmuCI	GTSAC	1 cut(s)	1000
NsiI	ATGCAT	1 cut(s)	937
PciSI	GCTCTTC	1 cut(s)	534
PctI	GAATGC	2 cut(s)	864, 935
PdiI	GCCGGC	1 cut(s)	1027
PfeI	GAWTC	2 cut(s)	82, 438
PflMI	CCANNNNNTGG	1 cut(s)	642
PkrI	GCNGC	6 cut(s)	110, 130, 139, 328, 598, 1132
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PshAI	GACNNNNGTC	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	23
PspN4I	GGNNCC	4 cut(s)	33, 191, 788, 789
PspOMI	GGGCCC	1 cut(s)	786
PspPI	GGNCC	3 cut(s)	377, 786, 787
PstI	CTGCAG	1 cut(s)	598
RsaI	GTAC	2 cut(s)	360, 945
RsaNI	GTAC	2 cut(s)	359, 944
RseI	CAYNNNNRTG	2 cut(s)	453, 1073
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	284, 371, 672
SatI	GCNGC	6 cut(s)	109, 129, 138, 327, 597, 1131
Sau3AI	GATC	1 cut(s)	851
Sau96I	GGNCC	3 cut(s)	377, 786, 787
ScaI	AGTACT	1 cut(s)	360
SchI	GAGTC	1 cut(s)	171
SduI	GDGCHC	6 cut(s)	23, 41, 552, 742, 790, 822
SfaNI	GCATC	2 cut(s)	695, 984
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	453, 1073
SmlI	CTYRAG	2 cut(s)	671, 1113
SmoI	CTYRAG	2 cut(s)	671, 1113
Sse9I	AATT	1 cut(s)	1134
SsiI	CCGC	7 cut(s)	5, 42, 126, 129, 174, 326, 1122
SspMI	CTAG	6 cut(s)	269, 824, 926, 953, 998, 1171
SstI	GAGCTC	1 cut(s)	23
StyI	CCWWGG	5 cut(s)	157, 636, 823, 881, 1030
TaaI	ACNGT	3 cut(s)	243, 874, 900
TaiI	ACGT	1 cut(s)	521
TaqI	TCGA	5 cut(s)	80, 153, 332, 452, 513
TasI	AATT	1 cut(s)	1134
TatI	WGTACW	2 cut(s)	358, 943
TauI	GCSGC	2 cut(s)	131, 329
TfiI	GAWTC	2 cut(s)	82, 438
Tru1I	TTAA	3 cut(s)	284, 371, 672
Tru9I	TTAA	3 cut(s)	284, 371, 672
TscAI	CASTG	2 cut(s)	598, 1092
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	4 cut(s)	108, 137, 596, 1130
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	5 cut(s)	46, 552, 928, 1010, 1155
TspGWI	ACGGA	3 cut(s)	13, 132, 294
TspRI	CASTG	2 cut(s)	598, 1092
Van91I	CCANNNNNTGG	1 cut(s)	642
Vha464I	CTTAAG	1 cut(s)	671
VneI	GTGCAC	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	377
XmaJI	CCTAGG	1 cut(s)	823
XspI	CTAG	6 cut(s)	269, 824, 926, 953, 998, 1171
ZrmI	AGTACT	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.