Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007474

Physical Location & Seq

Genomic Coordinates Reverse (-)

11376641 .. 11379631

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGCGGTGGTGATTGAGAGCTCCGTTTGGGAACCGAATCCCGGCGTATACATATTCATCTTCCTGGCCTCACTCTTCTCCATCCTCGTCTTCCCTTACGCTTCCAGCAGCAGCGGCGGCGGCAGCTCTGGCAAAGCTCCGTCGCTCTTCGACCATGGAATCTCCCCCACCGCTTCCTCTCTTCGCTTCCAGCGCAACTTCCTTCTCATCTATTCTCTCGCCTCAGTGATGGAAGGAGTGTGGTCTGTATTTGGCGAGTTCGAATTGGCTTACTACGGTTTCAGCAGAGAGCAAATGATGTTTTCTCTCTGTGTTGGATTTGCTGCGTCTCTGTGTGTTGGTTCTTTATTAGGCGTGCTTTCGGATTTAATTGGTCCAAAGAAAGTTTGCATCCTCTTTTGCATTCTACACCTTTTTGTCGGCTTGTGGAAGAGAATTACTGATCATCCGAGCATTTTGGTGGCGAGAATTTGTTTGTCACTTGCAGCTTCGAGTTTTTCGTTCAGTTTTGAGACGTGGATGGTAGTTCAACATGAAGAGCAAGGGCATAGGCAAGATATGTTGAGAGAGACATTTTGGTTAATGAGTTTCTTTGAGTCCGCGTCTCTTATTGGAAGCCAGGTGCTTTCAAATTGGCTCATTGGTGATAATTTGGAGAAAAACATGGCTTCACATTCTACTGCAGCCATCTTCTTGGCAATGATAGGCTTAGTCTGCCTCCTCAGAGGATGGACACAAACCCCACAAAAAGTAGCTCTTAAGGAGTATAGAGCGTCTTTCTCTGCATATATTTTTGGTGATAAAAGAATATGGCTTTTGGCATGGGCACAAGCTTGTCTTCACTTCTCTATAACAGTCTTCTGGATACTATGGGCCCCTACGATAGTGGCCGATGGACGGGAAGTGCACCTAGGGTTGATATATCCATGTTTTATGGGCTCAAAAATGCTTGGAAGCACAGTATTTCCGTGGCTGAATAGTGGACTGTCGTCCCTTAGAACTGAGGATTGCCTAGTATATGCATTCATCATGCTCGGGCTTGTATTGTCCGTAACAGCTTATGATTATCAGGAAATTGGAGTTTTAATGACACTATTTTGCATATTTCACGCTGGTCTTGGCGTGGTTTTGCCTTCACTTGCCAGATTGAGGACCATGTATGTCCCTAATGCACTGCGTGGAGGGATGATAAGCCTTTCTCAAGCCCCTGCAAATGCAGCAATTCTGCTTTTTCTGGTGCAAGGAAAATACTACTATAACATTGGGAATTCAACAATCATAGCGTTTGCTGCGCTTGGGCTATTCACAGCAGCTGGTTGTATGCATGTCTTGAAGCGATGGGGGAAGCAACCGTATCACAACTGGCACAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

459

Amino Acids

50.82

Weight (kDa)

8.43

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23093 AT2G23093
fragaria_vesca	FvH4_1g17220
malus_domestica	MD02G1182200.v1.1 MD15G1293400.v1.1
prunus_persica	Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1
pyrus_communis	pycom02g14760 pycom15g25640
rosa_chinensis	RchiOBHm_Chr2g0107371
rosa_laevigata	RLG00000017574
rosa_multiflora	Rmu_sc0010952.1_g000011
rosa_roxburghii	Rroxscaffold_2G00136390
rosa_rugosa	Rorug02G0142700 Rorug02G0142800 Rorug02G0142800 Rorug02G0142900
rosa_samantha	Rh2AG193200 Rh2BG205500 Rh2CG198500 Rh2DG200500
rosa_wichuraiana	Rw2G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	602
AciI	CCGC	6 cut(s)	5, 114, 117, 120, 171, 600
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	2 cut(s)	468, 1267
AdeI	CACNNNGTG	1 cut(s)	1178
AfiI	CCNNNNNNNGG	3 cut(s)	41, 897, 1149
AflII	CTTAAG	1 cut(s)	758
AgsI	TTSAA	4 cut(s)	530, 630, 1272, 1333
AjiI	CACGTC	1 cut(s)	516
AjnI	CCWGG	2 cut(s)	63, 618
AluBI	AGCT	8 cut(s)	21, 126, 137, 488, 755, 833, 1058, 1313
AluI	AGCT	8 cut(s)	21, 126, 137, 488, 755, 833, 1058, 1313
Alw21I	GWGCWC	2 cut(s)	23, 909
Alw26I	GTCTC	4 cut(s)	333, 506, 563, 609
Alw44I	GTGCAC	1 cut(s)	905
AlwNI	CAGNNNCTG	1 cut(s)	1313
Ama87I	CYCGRG	1 cut(s)	1034
AoxI	GGCC	3 cut(s)	66, 873, 888
ApaI	GGGCCC	1 cut(s)	877
ApaLI	GTGCAC	1 cut(s)	905
ApeKI	GCWGC	9 cut(s)	108, 111, 123, 323, 485, 683, 1217, 1289, 1310
ApoI	RAATTY	2 cut(s)	468, 1267
AspA2I	CCTAGG	1 cut(s)	910
AspLEI	GCGC	2 cut(s)	195, 1294
AspS9I	GGNCC	4 cut(s)	374, 873, 874, 1152
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	3 cut(s)	22, 656, 809
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	1034
AvaII	GGWCC	2 cut(s)	374, 1152
AvrII	CCTAGG	1 cut(s)	910
BaeGI	GKGCMC	3 cut(s)	829, 877, 909
BanII	GRGCYC	3 cut(s)	23, 877, 941
BbsI	GAAGAC	3 cut(s)	82, 830, 850
Bbv12I	GWGCWC	2 cut(s)	23, 909
BbvI	GCAGC	9 cut(s)	120, 123, 135, 310, 497, 695, 1229, 1276, 1322
BccI	CCATC	7 cut(s)	89, 223, 514, 695, 723, 887, 1332
BciT130I	CCWGG	2 cut(s)	65, 620
BciVI	GTATCC	1 cut(s)	858
BclI	TGATCA	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	4 cut(s)	333, 506, 563, 609
BfaI	CTAG	2 cut(s)	911, 1013
BfmI	CTRYAG	1 cut(s)	681
BfrI	CTTAAG	1 cut(s)	758
BfuI	GTATCC	1 cut(s)	858
BlnI	CCTAGG	1 cut(s)	910
Bme1390I	CCNGG	3 cut(s)	42, 65, 620
Bme18I	GGWCC	2 cut(s)	374, 1152
BmeT110I	CYCGRG	1 cut(s)	1034
BmgBI	CACGTC	1 cut(s)	516
BmgT120I	GGNCC	4 cut(s)	374, 873, 874, 1152
BmiI	GGNNCC	3 cut(s)	33, 875, 876
BmrFI	CCNGG	3 cut(s)	42, 65, 620
BmsI	GCATC	1 cut(s)	399
BoxI	GACNNNNGTC	1 cut(s)	988
BpiI	GAAGAC	3 cut(s)	82, 830, 850
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	1185
BpuMI	CCSGG	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	154, 910, 968
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 897, 1149
Bse1I	ACTGG	1 cut(s)	1367
Bse3DI	GCAATG	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	65, 620
BseDI	CCNNGG	3 cut(s)	154, 910, 968
BseGI	GGATG	6 cut(s)	81, 390, 445, 525, 734, 1191
BseLI	CCNNNNNNNGG	3 cut(s)	41, 897, 1149
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	3 cut(s)	237, 736, 993
BseNI	ACTGG	1 cut(s)	1367
BseRI	GAGGAG	1 cut(s)	710
BseSI	GKGCMC	3 cut(s)	829, 877, 909
BseXI	GCAGC	9 cut(s)	120, 123, 135, 310, 497, 695, 1229, 1276, 1322
Bsh1236I	CGCG	1 cut(s)	602
BshFI	GGCC	3 cut(s)	68, 875, 890
BsiHKAI	GWGCWC	2 cut(s)	23, 909
BsiHKCI	CYCGRG	1 cut(s)	1034
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	976, 1148
BslI	CCNNNNNNNGG	3 cut(s)	41, 897, 1149
BsmAI	GTCTC	4 cut(s)	333, 506, 563, 609
BsmBI	CGTCTC	3 cut(s)	333, 506, 609
BsmFI	GGGAC	2 cut(s)	976, 1148
BsmI	GAATGC	2 cut(s)	402, 1022
BsnI	GGCC	3 cut(s)	68, 875, 890
BsoBI	CYCGRG	1 cut(s)	1034
Bsp119I	TTCGAA	1 cut(s)	261
Bsp120I	GGGCCC	1 cut(s)	873
Bsp1286I	GDGCHC	5 cut(s)	23, 829, 877, 909, 941
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	6 cut(s)	5, 114, 117, 120, 171, 600
BspANI	GGCC	3 cut(s)	68, 875, 890
BspCNI	CTCAG	3 cut(s)	236, 735, 994
BspFNI	CGCG	1 cut(s)	602
BspLI	GGNNCC	3 cut(s)	33, 875, 876
BspMAI	CTGCAG	1 cut(s)	685
BspQI	GCTCTTC	2 cut(s)	152, 531
BspT104I	TTCGAA	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	1367
BssECI	CCNNGG	3 cut(s)	154, 910, 968
BssMI	GATC	1 cut(s)	442
BssNAI	GTATAC	1 cut(s)	49
BssT1I	CCWWGG	2 cut(s)	154, 910
Bst1107I	GTATAC	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	65, 620
Bst4CI	ACNGT	5 cut(s)	278, 856, 961, 987, 1353
Bst6I	CTCTTC	5 cut(s)	80, 152, 186, 425, 531
BstAFI	CTTAAG	1 cut(s)	758
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	5 cut(s)	223, 709, 722, 995, 1002
BstDSI	CCRYGG	2 cut(s)	154, 968
BstF5I	GGATG	6 cut(s)	81, 390, 445, 525, 734, 1191
BstFNI	CGCG	1 cut(s)	602
BstHHI	GCGC	2 cut(s)	195, 1294
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	4 cut(s)	333, 506, 563, 609
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	9 cut(s)	114, 117, 120, 123, 129, 192, 714, 1217, 1289
BstNI	CCWGG	2 cut(s)	65, 620
BstNSI	RCATGY	1 cut(s)	1328
BstPAI	GACNNNNGTC	1 cut(s)	988
BstSCI	CCNGG	3 cut(s)	40, 63, 618
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	3 cut(s)	829, 877, 909
BstUI	CGCG	1 cut(s)	602
BstV1I	GCAGC	9 cut(s)	120, 123, 135, 310, 497, 695, 1229, 1276, 1322
BstV2I	GAAGAC	3 cut(s)	82, 830, 850
BstXI	CCANNNNNNTGG	1 cut(s)	694
BstZ17I	GTATAC	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	858
BsuRI	GGCC	3 cut(s)	68, 875, 890
BtgI	CCRYGG	2 cut(s)	154, 968
BtgZI	GCGATG	1 cut(s)	1351
BtrI	CACGTC	1 cut(s)	516
BtsCI	GGATG	6 cut(s)	81, 390, 445, 525, 734, 1191
BtsI	GCAGTG	1 cut(s)	1172
BtsIMutI	CAGTG	2 cut(s)	231, 1172
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	1313
CfoI	GCGC	2 cut(s)	195, 1294
Cfr13I	GGNCC	4 cut(s)	374, 873, 874, 1152
CseI	GACGC	3 cut(s)	315, 591, 762
CviAII	CATG	8 cut(s)	155, 533, 664, 822, 927, 1030, 1156, 1325
DdeI	CTNAG	5 cut(s)	223, 709, 722, 995, 1002
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
DraIII	CACNNNGTG	1 cut(s)	1178
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	5 cut(s)	80, 152, 186, 425, 531
EarI	CTCTTC	5 cut(s)	80, 152, 186, 425, 531
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	154, 910
Eco24I	GRGCYC	3 cut(s)	23, 877, 941
Eco47I	GGWCC	2 cut(s)	374, 1152
Eco53kI	GAGCTC	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	1034
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	874
EcoRI	GAATTC	1 cut(s)	1267
EcoRII	CCWGG	2 cut(s)	63, 618
EcoT14I	CCWWGG	2 cut(s)	154, 910
EcoT22I	ATGCAT	2 cut(s)	1024, 1326
EcoT38I	GRGCYC	3 cut(s)	23, 877, 941
ErhI	CCWWGG	2 cut(s)	154, 910
Esp3I	CGTCTC	3 cut(s)	333, 506, 609
FaeI	CATG	8 cut(s)	158, 536, 667, 825, 930, 1033, 1159, 1328
FalI	AAGNNNNNCTT	4 cut(s)	741, 773, 822, 854
FaqI	GGGAC	2 cut(s)	976, 1148
FatI	CATG	8 cut(s)	154, 532, 663, 821, 926, 1029, 1155, 1324
FbaI	TGATCA	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	6 cut(s)	68, 377, 432, 532, 741, 1198
FriOI	GRGCYC	3 cut(s)	23, 877, 941
FspBI	CTAG	2 cut(s)	911, 1013
GlaI	GCGC	2 cut(s)	194, 1293
HaeIII	GGCC	3 cut(s)	68, 875, 890
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	3 cut(s)	315, 591, 762
HhaI	GCGC	2 cut(s)	195, 1294
Hin1II	CATG	8 cut(s)	158, 536, 667, 825, 930, 1033, 1159, 1328
Hin6I	GCGC	2 cut(s)	193, 1292
HinP1I	GCGC	2 cut(s)	193, 1292
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	3 cut(s)	37, 159, 596
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	3 cut(s)	22, 656, 809
Hpy166II	GTNNAC	3 cut(s)	49, 907, 983
Hpy188I	TCNGA	3 cut(s)	364, 450, 725
Hpy188III	TCNNGA	3 cut(s)	862, 1070, 1330
Hpy8I	GTNNAC	3 cut(s)	49, 907, 983
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	212, 227, 1143
HpyCH4III	ACNGT	5 cut(s)	278, 856, 961, 987, 1353
HpyCH4IV	ACGT	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	9 cut(s)	114, 117, 120, 123, 129, 192, 714, 1217, 1289
HpyF3I	CTNAG	5 cut(s)	223, 709, 722, 995, 1002
HpySE526I	ACGT	1 cut(s)	515
Hsp92II	CATG	8 cut(s)	158, 536, 667, 825, 930, 1033, 1159, 1328
HspAI	GCGC	2 cut(s)	193, 1292
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	442
LguI	GCTCTTC	2 cut(s)	152, 531
LmnI	GCTCC	2 cut(s)	26, 142
Lsp1109I	GCAGC	9 cut(s)	120, 123, 135, 310, 497, 695, 1229, 1276, 1322
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	2 cut(s)	911, 1013
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	2 cut(s)	477, 1051
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MhlI	GDGCHC	5 cut(s)	23, 829, 877, 909, 941
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	295
Mph1103I	ATGCAT	2 cut(s)	1024, 1326
MseI	TTAA	4 cut(s)	368, 581, 759, 1085
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	2 cut(s)	114, 1313
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	3 cut(s)	42, 65, 620
Mva1269I	GAATGC	2 cut(s)	402, 1022
MvaI	CCWGG	2 cut(s)	65, 620
MvnI	CGCG	1 cut(s)	602
MwoI	GCNNNNNNNGC	9 cut(s)	114, 117, 120, 123, 129, 192, 714, 1217, 1289
NciI	CCSGG	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	8 cut(s)	158, 536, 667, 825, 930, 1033, 1159, 1328
NlaIV	GGNNCC	3 cut(s)	33, 875, 876
NmuCI	GTSAC	1 cut(s)	477
NsiI	ATGCAT	2 cut(s)	1024, 1326
NspI	RCATGY	1 cut(s)	1328
NspV	TTCGAA	1 cut(s)	261
PciSI	GCTCTTC	2 cut(s)	152, 531
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PctI	GAATGC	2 cut(s)	402, 1022
PfeI	GAWTC	2 cut(s)	37, 159
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
PshAI	GACNNNNGTC	1 cut(s)	988
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	63, 618
PspGI	CCWGG	2 cut(s)	63, 618
PspN4I	GGNNCC	3 cut(s)	33, 875, 876
PspOMI	GGGCCC	1 cut(s)	873
PspPI	GGNCC	4 cut(s)	374, 873, 874, 1152
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	1313
PvuII	CAGCTG	1 cut(s)	1313
RseI	CAYNNNNRTG	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	2 cut(s)	152, 531
SaqAI	TTAA	4 cut(s)	368, 581, 759, 1085
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	4 cut(s)	374, 873, 874, 1152
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	3 cut(s)	42, 65, 620
SduI	GDGCHC	5 cut(s)	23, 829, 877, 909, 941
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	681
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	2 cut(s)	374, 1152
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	2 cut(s)	758, 1200
SmoI	CTYRAG	2 cut(s)	758, 1200
SsiI	CCGC	6 cut(s)	5, 114, 117, 120, 171, 600
SspMI	CTAG	2 cut(s)	911, 1013
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	3 cut(s)	40, 63, 618
StyI	CCWWGG	2 cut(s)	154, 910
TaaI	ACNGT	5 cut(s)	278, 856, 961, 987, 1353
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	3 cut(s)	150, 261, 491
TauI	GCSGC	3 cut(s)	117, 120, 123
TfiI	GAWTC	2 cut(s)	37, 159
Tru1I	TTAA	4 cut(s)	368, 581, 759, 1085
Tru9I	TTAA	4 cut(s)	368, 581, 759, 1085
TscAI	CASTG	2 cut(s)	231, 1179
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	9 cut(s)	108, 111, 123, 323, 485, 683, 1217, 1289, 1310
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	3 cut(s)	46, 549, 1015
TspGWI	ACGGA	4 cut(s)	13, 129, 957, 1039
TspRI	CASTG	2 cut(s)	231, 1179
Vha464I	CTTAAG	1 cut(s)	758
VneI	GTGCAC	1 cut(s)	905
VpaK11BI	GGWCC	2 cut(s)	374, 1152
XapI	RAATTY	2 cut(s)	468, 1267
XceI	RCATGY	1 cut(s)	1328
XmaJI	CCTAGG	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	2 cut(s)	911, 1013
Zsp2I	ATGCAT	2 cut(s)	1024, 1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.