Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007474

Physical Location & Seq

Genomic Coordinates Reverse (-)

20129227 .. 20132271

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25640.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGGCGGTGGTGATTGAGAGCTCCGTTTGGGAACCGAATCCCGGCGTATACATATTCATCTTCCTGGTCTCTCTCTTCTCCATCCTCGTCTTCCCTTATGCTTCGAGCAGCGGCAGCAGCAGCAGCTCCGGCAAAGCTCCGTCGCTCTTCGACCATGGAATCTCCCCCACCGCTTCCTCTCTTCGCTTCCAGCGCAACTTCCTTCTCATCTATTCTCTCGCCTCAGTTATGGAAGGAGTGTGGTCTGTATTTGGCGAGTTCGAATTAGCTTACCACGGTTTGAGCAAAGAGCAAATGATGTTTTCTCTCTGTGTTGGATTTGCAGCATCTCTCATTGTTGGTTCTTTCTTAGGCGTGCTTTCGGATTTAATAGGTCCAAAGAAAGTTTGCATCCTCTTTTGCATTCTACATCTCTTTCTTGGCTTGTGGAAGAGAATTACTGATCACCCGAGCATTTTGGTGGCGAGAATTTGCTTGTCTCTCACAGCTTCTATTTTTTCAATCAGTTTTGAGACGTGGATGGTAGTTCAACACGAAGAGCAAGCGCACAGGCAAGATATGTTGAGTGAGACGTTCTGGTTAATGAGTTTCTTTGATGCTGCATCTCTTATTGGAAGCCAGGTTCTTTCGAATTGGCTCATTGGTGATAATTTGGAGAAAAACATGGCTTCTCATTCTACTACAGCCGTCTTCTTGGCAATACTTGGCTTAGTCTGTCTCCTGAGAGGATGGACACAAACCCCACAAAAAGTAGCTCTTAAGGAGTATAGGGCATCTTTCTCTGCATATATTTTTGGTGATAAAAGAATATGGCTTTTGGCATGGGCACAAGCTTGTCTTCACTTCTCTACAGCAGTCTTCTGGATACTATGGTCCCCTACAATAGTGGCTGATGGACGAGAAGTGCACCTAGGGTTGATATATCCATGTTTTCTGGGCTCAAGAATGCTTGGAAGCACGGTATTTCCGTGGCTGAATAGTGGACTGTCGTCCCTTAGAACTGAGGATTGCCTAGTATATGCATTCATCATGCTGGGGCTTGTATTGTCCATAACAGCTTATGATTATCAGGAAATTGGAGTTTTAGTGACACTGTTTTGCATATTTCATGCTGGTCTTGGTGTGGTTTTGCCTTCACTTGCCAGATTGAGGACCATGTATGTCCCTAATGCACTCCGTGGAGGGATGATAAGCCTTTCTCAAGCACCTGCAAATGCAGCAATTCTGCTTTTTCTGGTGCAAGGGAAATATTACCATAACATTGGTAATTCAACAATCATAGCTTTTGCTGCCCTTGGGCTATTCACAGCAGCTGGTTGCATGCATGTCTTGAAGCGATGGGGGAAGCAACCATATCACAACTGGCATAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

459

Amino Acids

50.76

Weight (kDa)

8.28

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23093 AT2G23093
fragaria_vesca	FvH4_1g17220
malus_domestica	MD02G1182200.v1.1 MD15G1293400.v1.1
prunus_persica	Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1 Prupe.6G224200_v2.0.a1
pyrus_communis	pycom02g14760 pycom15g25640
rosa_chinensis	RchiOBHm_Chr2g0107371
rosa_laevigata	RLG00000017574
rosa_multiflora	Rmu_sc0010952.1_g000011
rosa_roxburghii	Rroxscaffold_2G00136390
rosa_rugosa	Rorug02G0142700 Rorug02G0142800 Rorug02G0142800 Rorug02G0142900
rosa_samantha	Rh2AG193200 Rh2BG205500 Rh2CG198500 Rh2DG200500
rosa_wichuraiana	Rw2G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1216
Acc36I	ACCTGC	1 cut(s)	1216
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	3 cut(s)	5, 111, 171
AcsI	RAATTY	1 cut(s)	468
AdeI	CACNNNGTG	1 cut(s)	1178
AfiI	CCNNNNNNNGG	2 cut(s)	41, 1149
AflII	CTTAAG	1 cut(s)	758
AgsI	TTSAA	4 cut(s)	501, 530, 1272, 1333
AjiI	CACGTC	1 cut(s)	516
AjnI	CCWGG	2 cut(s)	63, 618
AloI	GAACNNNNNNTCC	2 cut(s)	606, 638
Alw21I	GWGCWC	2 cut(s)	23, 909
Alw26I	GTCTC	5 cut(s)	73, 483, 506, 563, 722
Alw44I	GTGCAC	1 cut(s)	905
AlwNI	CAGNNNCTG	1 cut(s)	1313
Ama87I	CYCGRG	1 cut(s)	448
ApaLI	GTGCAC	1 cut(s)	905
ApoI	RAATTY	1 cut(s)	468
AspA2I	CCTAGG	1 cut(s)	910
AspLEI	GCGC	2 cut(s)	195, 547
AspS9I	GGNCC	3 cut(s)	374, 873, 1152
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	4 cut(s)	22, 437, 656, 809
AsuII	TTCGAA	2 cut(s)	261, 629
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	3 cut(s)	374, 873, 1152
AvrII	CCTAGG	1 cut(s)	910
BaeGI	GKGCMC	2 cut(s)	829, 909
BaeI	ACNNNNGTAYC	2 cut(s)	857, 890
BanII	GRGCYC	2 cut(s)	23, 941
BbsI	GAAGAC	4 cut(s)	82, 682, 830, 850
Bbv12I	GWGCWC	2 cut(s)	23, 909
BccI	CCATC	5 cut(s)	89, 514, 723, 887, 1332
BceAI	ACGGC	1 cut(s)	671
BciT130I	CCWGG	2 cut(s)	65, 620
BciVI	GTATCC	1 cut(s)	858
BclI	TGATCA	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	5 cut(s)	73, 483, 506, 563, 722
BfaI	CTAG	2 cut(s)	911, 1013
BfmI	CTRYAG	2 cut(s)	681, 849
BfrI	CTTAAG	1 cut(s)	758
BfuAI	ACCTGC	1 cut(s)	1216
BfuI	GTATCC	1 cut(s)	858
BlnI	CCTAGG	1 cut(s)	910
Bme1390I	CCNGG	3 cut(s)	42, 65, 620
Bme18I	GGWCC	3 cut(s)	374, 873, 1152
BmeT110I	CYCGRG	1 cut(s)	448
BmgBI	CACGTC	1 cut(s)	516
BmgT120I	GGNCC	3 cut(s)	374, 873, 1152
BmiI	GGNNCC	2 cut(s)	33, 875
BmrFI	CCNGG	3 cut(s)	42, 65, 620
BmsI	GCATC	5 cut(s)	335, 399, 586, 611, 782
BoxI	GACNNNNGTC	1 cut(s)	988
BpiI	GAAGAC	4 cut(s)	82, 682, 830, 850
Bpu14I	TTCGAA	2 cut(s)	261, 629
BpuEI	CTTGAG	2 cut(s)	925, 1185
BpuMI	CCSGG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	6 cut(s)	154, 274, 910, 968, 1177, 1294
BsaXI	ACNNNNNCTCC	2 cut(s)	1071, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 1149
Bse1I	ACTGG	1 cut(s)	1367
BseBI	CCWGG	2 cut(s)	65, 620
BseDI	CCNNGG	6 cut(s)	154, 274, 910, 968, 1177, 1294
BseGI	GGATG	5 cut(s)	81, 390, 525, 734, 1191
BseLI	CCNNNNNNNGG	2 cut(s)	41, 1149
BseMII	CTCAG	3 cut(s)	237, 713, 993
BseNI	ACTGG	1 cut(s)	1367
BseSI	GKGCMC	2 cut(s)	829, 909
BseYI	CCCAGC	1 cut(s)	1033
BsiHKAI	GWGCWC	2 cut(s)	23, 909
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	42, 129
BslFI	GGGAC	3 cut(s)	859, 976, 1148
BslI	CCNNNNNNNGG	2 cut(s)	41, 1149
BsmAI	GTCTC	5 cut(s)	73, 483, 506, 563, 722
BsmBI	CGTCTC	2 cut(s)	506, 563
BsmFI	GGGAC	3 cut(s)	859, 976, 1148
BsmI	GAATGC	3 cut(s)	402, 951, 1022
Bso31I	GGTCTC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	448
Bsp119I	TTCGAA	2 cut(s)	261, 629
Bsp1286I	GDGCHC	4 cut(s)	23, 829, 909, 941
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	3 cut(s)	5, 111, 171
BspCNI	CTCAG	3 cut(s)	236, 714, 994
BspLI	GGNNCC	2 cut(s)	33, 875
BspMI	ACCTGC	1 cut(s)	1216
BspQI	GCTCTTC	2 cut(s)	152, 531
BspT104I	TTCGAA	2 cut(s)	261, 629
BspTI	CTTAAG	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	1367
BssECI	CCNNGG	6 cut(s)	154, 274, 910, 968, 1177, 1294
BssMI	GATC	1 cut(s)	442
BssNAI	GTATAC	1 cut(s)	49
BssT1I	CCWWGG	3 cut(s)	154, 910, 1294
Bst1107I	GTATAC	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	65, 620
Bst4CI	ACNGT	4 cut(s)	278, 961, 987, 1095
Bst6I	CTCTTC	5 cut(s)	80, 152, 186, 425, 531
BstAFI	CTTAAG	1 cut(s)	758
BstBI	TTCGAA	2 cut(s)	261, 629
BstC8I	GCNNGC	3 cut(s)	356, 543, 1322
BstDEI	CTNAG	6 cut(s)	223, 349, 709, 722, 995, 1002
BstDSI	CCRYGG	4 cut(s)	154, 274, 968, 1177
BstF5I	GGATG	5 cut(s)	81, 390, 525, 734, 1191
BstHHI	GCGC	2 cut(s)	195, 547
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	5 cut(s)	73, 483, 506, 563, 722
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	8 cut(s)	114, 117, 120, 123, 129, 192, 1217, 1289
BstNI	CCWGG	2 cut(s)	65, 620
BstNSI	RCATGY	2 cut(s)	1324, 1328
BstPAI	GACNNNNGTC	1 cut(s)	988
BstSCI	CCNGG	3 cut(s)	40, 63, 618
BstSFI	CTRYAG	2 cut(s)	681, 849
BstSLI	GKGCMC	2 cut(s)	829, 909
BstV2I	GAAGAC	4 cut(s)	82, 682, 830, 850
BstXI	CCANNNNNNTGG	1 cut(s)	1262
BstZ17I	GTATAC	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	858
BtgI	CCRYGG	4 cut(s)	154, 274, 968, 1177
BtgZI	GCGATG	1 cut(s)	1351
BtrI	CACGTC	1 cut(s)	516
BtsCI	GGATG	5 cut(s)	81, 390, 525, 734, 1191
BtsIMutI	CAGTG	1 cut(s)	1091
BveI	ACCTGC	1 cut(s)	1216
Cac8I	GCNNGC	3 cut(s)	356, 543, 1322
CaiI	CAGNNNCTG	1 cut(s)	1313
CfoI	GCGC	2 cut(s)	195, 547
Cfr13I	GGNCC	3 cut(s)	374, 873, 1152
CviAII	CATG	9 cut(s)	155, 664, 822, 927, 1030, 1109, 1156, 1321, 1325
DdeI	CTNAG	6 cut(s)	223, 349, 709, 722, 995, 1002
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
DraIII	CACNNNGTG	1 cut(s)	1178
Eam1104I	CTCTTC	5 cut(s)	80, 152, 186, 425, 531
EarI	CTCTTC	5 cut(s)	80, 152, 186, 425, 531
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	3 cut(s)	154, 910, 1294
Eco24I	GRGCYC	2 cut(s)	23, 941
Eco31I	GGTCTC	1 cut(s)	73
Eco47I	GGWCC	3 cut(s)	374, 873, 1152
Eco53kI	GAGCTC	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	21
EcoRII	CCWGG	2 cut(s)	63, 618
EcoT14I	CCWWGG	3 cut(s)	154, 910, 1294
EcoT22I	ATGCAT	2 cut(s)	1024, 1326
EcoT38I	GRGCYC	2 cut(s)	23, 941
ErhI	CCWWGG	3 cut(s)	154, 910, 1294
Esp3I	CGTCTC	2 cut(s)	506, 563
FaeI	CATG	9 cut(s)	158, 667, 825, 930, 1033, 1112, 1159, 1324, 1328
FalI	AAGNNNNNCTT	4 cut(s)	741, 773, 822, 854
FaqI	GGGAC	3 cut(s)	859, 976, 1148
FatI	CATG	9 cut(s)	154, 663, 821, 926, 1029, 1108, 1155, 1320, 1324
FbaI	TGATCA	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	5 cut(s)	68, 377, 532, 741, 1198
FriOI	GRGCYC	2 cut(s)	23, 941
FspBI	CTAG	2 cut(s)	911, 1013
GlaI	GCGC	2 cut(s)	194, 546
GsaI	CCCAGC	1 cut(s)	1037
HapII	CCGG	2 cut(s)	42, 129
HhaI	GCGC	2 cut(s)	195, 547
Hin1II	CATG	9 cut(s)	158, 667, 825, 930, 1033, 1112, 1159, 1324, 1328
Hin6I	GCGC	2 cut(s)	193, 545
HinP1I	GCGC	2 cut(s)	193, 545
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	2 cut(s)	37, 159
HpaII	CCGG	2 cut(s)	42, 129
HphI	GGTGA	4 cut(s)	22, 437, 656, 809
Hpy166II	GTNNAC	3 cut(s)	49, 907, 983
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	5 cut(s)	721, 862, 942, 1070, 1330
Hpy8I	GTNNAC	3 cut(s)	49, 907, 983
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	212, 227, 1143
HpyCH4III	ACNGT	4 cut(s)	278, 961, 987, 1095
HpyCH4IV	ACGT	2 cut(s)	515, 572
HpyF10VI	GCNNNNNNNGC	8 cut(s)	114, 117, 120, 123, 129, 192, 1217, 1289
HpyF3I	CTNAG	6 cut(s)	223, 349, 709, 722, 995, 1002
HpySE526I	ACGT	2 cut(s)	515, 572
Hsp92II	CATG	9 cut(s)	158, 667, 825, 930, 1033, 1112, 1159, 1324, 1328
HspAI	GCGC	2 cut(s)	193, 545
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	442
LguI	GCTCTTC	2 cut(s)	152, 531
LmnI	GCTCC	3 cut(s)	26, 131, 142
LweI	GCATC	5 cut(s)	335, 399, 586, 611, 782
MaeI	CTAG	2 cut(s)	911, 1013
MaeII	ACGT	2 cut(s)	515, 572
MaeIII	GTNAC	1 cut(s)	1087
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MhlI	GDGCHC	4 cut(s)	23, 829, 909, 941
MluCI	AATT	9 cut(s)	263, 435, 468, 631, 649, 1074, 1221, 1267, 1370
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	8 cut(s)	95, 187, 232, 404, 719, 997, 1143, 1175
Mph1103I	ATGCAT	2 cut(s)	1024, 1326
MseI	TTAA	3 cut(s)	368, 581, 759
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	2 cut(s)	111, 1313
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	2 cut(s)	42, 129
MspR9I	CCNGG	3 cut(s)	42, 65, 620
Mva1269I	GAATGC	3 cut(s)	402, 951, 1022
MvaI	CCWGG	2 cut(s)	65, 620
MwoI	GCNNNNNNNGC	8 cut(s)	114, 117, 120, 123, 129, 192, 1217, 1289
NciI	CCSGG	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	9 cut(s)	158, 667, 825, 930, 1033, 1112, 1159, 1324, 1328
NlaIV	GGNNCC	2 cut(s)	33, 875
NmuCI	GTSAC	1 cut(s)	1087
NsiI	ATGCAT	2 cut(s)	1024, 1326
NspI	RCATGY	2 cut(s)	1324, 1328
NspV	TTCGAA	2 cut(s)	261, 629
PaeI	GCATGC	1 cut(s)	1324
PaqCI	CACCTGC	1 cut(s)	1216
PciSI	GCTCTTC	2 cut(s)	152, 531
PcsI	WCGNNNNNNNCGW	1 cut(s)	965
PctI	GAATGC	3 cut(s)	402, 951, 1022
PfeI	GAWTC	2 cut(s)	37, 159
PshAI	GACNNNNGTC	1 cut(s)	988
Psp124BI	GAGCTC	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	63, 618
PspFI	CCCAGC	1 cut(s)	1033
PspGI	CCWGG	2 cut(s)	63, 618
PspN4I	GGNNCC	2 cut(s)	33, 875
PspPI	GGNCC	3 cut(s)	374, 873, 1152
PstNI	CAGNNNCTG	1 cut(s)	1313
PvuII	CAGCTG	1 cut(s)	1313
RseI	CAYNNNNRTG	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	2 cut(s)	152, 531
SaqAI	TTAA	3 cut(s)	368, 581, 759
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	3 cut(s)	374, 873, 1152
ScrFI	CCNGG	3 cut(s)	42, 65, 620
SduI	GDGCHC	4 cut(s)	23, 829, 909, 941
SfaNI	GCATC	5 cut(s)	335, 399, 586, 611, 782
SfcI	CTRYAG	2 cut(s)	681, 849
SfuI	TTCGAA	2 cut(s)	261, 629
SinI	GGWCC	3 cut(s)	374, 873, 1152
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	3 cut(s)	758, 940, 1200
SmoI	CTYRAG	3 cut(s)	758, 940, 1200
SphI	GCATGC	1 cut(s)	1324
Sse9I	AATT	9 cut(s)	263, 435, 468, 631, 649, 1074, 1221, 1267, 1370
SsiI	CCGC	3 cut(s)	5, 111, 171
SspI	AATATT	1 cut(s)	1250
SspMI	CTAG	2 cut(s)	911, 1013
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	3 cut(s)	40, 63, 618
StyI	CCWWGG	3 cut(s)	154, 910, 1294
TaaI	ACNGT	4 cut(s)	278, 961, 987, 1095
TaiI	ACGT	2 cut(s)	518, 575
TaqI	TCGA	4 cut(s)	104, 150, 261, 629
TasI	AATT	9 cut(s)	263, 435, 468, 631, 649, 1074, 1221, 1267, 1370
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	37, 159
Tru1I	TTAA	3 cut(s)	368, 581, 759
Tru9I	TTAA	3 cut(s)	368, 581, 759
TscAI	CASTG	1 cut(s)	1098
TseFI	GTSAC	1 cut(s)	1087
Tsp45I	GTSAC	1 cut(s)	1087
TspDTI	ATGAA	3 cut(s)	46, 1015, 1097
TspGWI	ACGGA	4 cut(s)	13, 129, 957, 1166
TspRI	CASTG	1 cut(s)	1098
Vha464I	CTTAAG	1 cut(s)	758
VneI	GTGCAC	1 cut(s)	905
VpaK11BI	GGWCC	3 cut(s)	374, 873, 1152
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	2 cut(s)	1324, 1328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1359
XmaJI	CCTAGG	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	2 cut(s)	911, 1013
Zsp2I	ATGCAT	2 cut(s)	1024, 1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.