FvH4_1g17220
ERF Family

Major facilitator superfamily domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007474
Physical Location & Seq
Reverse (-)
9944603 .. 9947320
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17220.t1

Sequence Viewer

Length: 1214 bp
ATGGCGGTGGTGGTTGAGACCTCCGTTTGGGAACCGAGTCCGGCGCTCTACGTCTTCATCTTCTTCGCCTGCCTCTTCTCGATTCTCTTCTTCCCCTACGCCTCCGGCACCGCCAACACCAGCGCCGCCTCCGTGGCGAAAGCTCCGTCGCTTTTCGACCACGGCGGCTCCCCCACCGCCTCGTCGTTCCGGTTCCAGCGGAACTTCCTGCTGCTCTATTCTCTCGCCTCAGTTATGGAAGGACTGTGGTCGGTGTTCGGTGAGTTTGAGCTGGCGTACTACGGATTAAGCAAAGAGAAAATGGTGCTTTATCTCTGTGTAGGATTCGCAGCTTCGATTTCTATTGGTTCTTTGTTAGGTGTGGTTTGTGATTTAATCAAGGGCACAGGCAGGATATGCTGAGTGAGACATTTTGGTTGATGAGTTTCTTTGAGTCAGCATGTCTTATTGGAAGCCAGGTTTTTTCAAATTGGCTCATAGGTAATAATGCGGAGAGAAGTATGGCGGCTCATTCCACTGCAGCTATCTTCTTGGCAGCAATAAGCTTAGTCTGTCTCACCAAGGGATGTAAAGAAATCCCACACAAAGTAGCTCTAAAGGAGTATAGGGCATCTTTTCGTGCATACATTGTTGGCGATAAAAGAATATGGCTTTTGGCATGGGCACAAGCTTGCCTTCACTTCTCTGTAGCAGTATTCTGGATACTATGGGCCCCAACAATAGTGGCTGACGGACGAGAGGTGCACCTAGGGTTGATATATCCCTGTTTTCTGGGATCAAGAATGCTAGGAAGCACAGTATTCCCATGGCTCATTAGTGGACTTTCATCCCTTAGAACTGAGGATTGCCTAGTATATGCATTCATTGTTCTGGGGCTAGTAATGTCCATAACAGCTTATGACTATCAGGAAGTTGGGATGCTAGTTACACTATTTTGCATATTTCATGCCGGCCTTGGCGTGGTACTGCCTTCACTTGCCAGATTGAGAACCATGTATGTGCCTAATGCACTGCGTGGAGGGATGATAAGCCTTTCTCAAGCCCCCGCAAATGCAGCAATTCTGCTTTTTCTGGTGCAAGGAAAATACCACAATAACATTGGAAACTCAACGATCATAGCATTTTCTGCCCTGGGGTTATTCACAGCAGCCGGCTGCATGCATGTCTTGAAGCGATGGGGGAAGCAACCATATCAGAACTGGCACAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_5

Protein Analysis

404

Amino Acids

43.22

Weight (kDa)

7.87

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 107
AciI CCGC 9 cut(s) 5, 111, 126, 165, 177, 199, 490, 505, 1046
AclWI GGATC 1 cut(s) 783
AdeI CACNNNGTG 1 cut(s) 1015
AfaI GTAC 2 cut(s) 278, 965
AfiI CCNNNNNNNGG 2 cut(s) 27, 960
AgsI TTSAA 2 cut(s) 467, 1170
AjnI CCWGG 2 cut(s) 455, 1130
AluBI AGCT 8 cut(s) 143, 271, 332, 523, 545, 592, 670, 895
AluI AGCT 8 cut(s) 143, 271, 332, 523, 545, 592, 670, 895
Alw21I GWGCWC 1 cut(s) 746
Alw26I GTCTC 3 cut(s) 11, 400, 559
Alw44I GTGCAC 1 cut(s) 742
AlwI GGATC 1 cut(s) 783
AoxI GGCC 2 cut(s) 710, 951
ApaI GGGCCC 1 cut(s) 714
ApaLI GTGCAC 1 cut(s) 742
ApeKI GCWGC 7 cut(s) 211, 329, 520, 535, 1054, 1147, 1154
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspA2I CCTAGG 1 cut(s) 747
AspLEI GCGC 2 cut(s) 46, 125
AspS9I GGNCC 2 cut(s) 710, 711
AsuHPI GGTGA 2 cut(s) 272, 549
AvrII CCTAGG 1 cut(s) 747
BaeGI GKGCMC 4 cut(s) 386, 666, 714, 746
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 746
BbvI GCAGC 7 cut(s) 198, 341, 532, 547, 1066, 1141, 1159
BccI CCATC 1 cut(s) 1169
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 457, 1132
BciVI GTATCC 1 cut(s) 695
BcoDI GTCTC 3 cut(s) 11, 400, 559
BfaI CTAG 5 cut(s) 748, 787, 850, 877, 922
BfmI CTRYAG 2 cut(s) 518, 686
BfoI RGCGCY 2 cut(s) 47, 126
BfuI GTATCC 1 cut(s) 695
BglI GCCNNNNNGGC 1 cut(s) 134
BlnI CCTAGG 1 cut(s) 747
Bme1390I CCNGG 2 cut(s) 457, 1132
BmgT120I GGNCC 2 cut(s) 710, 711
BmiI GGNNCC 6 cut(s) 33, 109, 169, 194, 712, 713
BmrFI CCNGG 2 cut(s) 457, 1132
BmsI GCATC 2 cut(s) 619, 908
BoxI GACNNNNGTC 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 1022
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 8 cut(s) 132, 160, 560, 747, 805, 954, 1130, 1131
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 960
Bse118I RCCGGY 2 cut(s) 949, 1150
Bse1I ACTGG 1 cut(s) 1204
BseBI CCWGG 2 cut(s) 457, 1132
BseDI CCNNGG 8 cut(s) 132, 160, 560, 747, 805, 954, 1130, 1131
BseGI GGATG 4 cut(s) 571, 826, 923, 1028
BseLI CCNNNNNNNGG 2 cut(s) 27, 960
BseMII CTCAG 3 cut(s) 243, 391, 830
BseNI ACTGG 1 cut(s) 1204
BseSI GKGCMC 4 cut(s) 386, 666, 714, 746
BseXI GCAGC 7 cut(s) 198, 341, 532, 547, 1066, 1141, 1159
BshFI GGCC 2 cut(s) 712, 953
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 746
BsiSI CCGG 5 cut(s) 41, 105, 190, 950, 1151
BslI CCNNNNNNNGG 2 cut(s) 27, 960
BsmAI GTCTC 3 cut(s) 11, 400, 559
BsmI GAATGC 2 cut(s) 788, 859
BsnI GGCC 2 cut(s) 712, 953
Bso31I GGTCTC 1 cut(s) 11
Bsp120I GGGCCC 1 cut(s) 710
Bsp1286I GDGCHC 4 cut(s) 386, 666, 714, 746
Bsp143I GATC 2 cut(s) 775, 1112
Bsp19I CCATGG 1 cut(s) 805
BspACI CCGC 9 cut(s) 5, 111, 126, 165, 177, 199, 490, 505, 1046
BspANI GGCC 2 cut(s) 712, 953
BspCNI CTCAG 3 cut(s) 242, 392, 831
BspLI GGNNCC 6 cut(s) 33, 109, 169, 194, 712, 713
BspMAI CTGCAG 1 cut(s) 522
BspPI GGATC 1 cut(s) 783
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 2 cut(s) 949, 1150
BsrI ACTGG 1 cut(s) 1204
BssAI RCCGGY 2 cut(s) 949, 1150
BssECI CCNNGG 8 cut(s) 132, 160, 560, 747, 805, 954, 1130, 1131
BssMI GATC 2 cut(s) 775, 1112
BssT1I CCWWGG 4 cut(s) 560, 747, 805, 954
Bst2UI CCWGG 2 cut(s) 457, 1132
Bst4CI ACNGT 2 cut(s) 246, 798
Bst6I CTCTTC 2 cut(s) 80, 92
BstAPI GCANNNNNTGC 2 cut(s) 396, 1126
BstC8I GCNNGC 6 cut(s) 70, 273, 672, 951, 1152, 1159
BstDEI CTNAG 5 cut(s) 229, 400, 546, 832, 839
BstDSI CCRYGG 3 cut(s) 132, 160, 805
BstF5I GGATG 4 cut(s) 571, 826, 923, 1028
BstH2I RGCGCY 2 cut(s) 47, 126
BstHHI GCGC 2 cut(s) 46, 125
BstKTI GATC 2 cut(s) 778, 1115
BstMAI GTCTC 3 cut(s) 11, 400, 559
BstMBI GATC 2 cut(s) 775, 1112
BstMWI GCNNNNNNNGC 4 cut(s) 134, 396, 1054, 1126
BstNI CCWGG 2 cut(s) 457, 1132
BstNSI RCATGY 3 cut(s) 443, 1161, 1165
BstPAI GACNNNNGTC 1 cut(s) 247
BstSCI CCNGG 2 cut(s) 455, 1130
BstSFI CTRYAG 2 cut(s) 518, 686
BstSLI GKGCMC 4 cut(s) 386, 666, 714, 746
BstV1I GCAGC 7 cut(s) 198, 341, 532, 547, 1066, 1141, 1159
BstV2I GAAGAC 1 cut(s) 46
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 2 cut(s) 712, 953
BtgI CCRYGG 3 cut(s) 132, 160, 805
BtgZI GCGATG 1 cut(s) 1188
BtsCI GGATG 4 cut(s) 571, 826, 923, 1028
BtsI GCAGTG 2 cut(s) 515, 1009
BtsIMutI CAGTG 2 cut(s) 515, 1009
Cac8I GCNNGC 6 cut(s) 70, 273, 672, 951, 1152, 1159
CfoI GCGC 2 cut(s) 46, 125
Cfr10I RCCGGY 2 cut(s) 949, 1150
Cfr13I GGNCC 2 cut(s) 710, 711
Csp6I GTAC 2 cut(s) 277, 964
CspCI CAANNNNNGTGG 2 cut(s) 704, 739
CviAII CATG 7 cut(s) 440, 659, 806, 946, 993, 1158, 1162
CviQI GTAC 2 cut(s) 277, 964
DdeI CTNAG 5 cut(s) 229, 400, 546, 832, 839
DpnI GATC 2 cut(s) 777, 1114
DpnII GATC 2 cut(s) 775, 1112
DraIII CACNNNGTG 1 cut(s) 1015
Eam1104I CTCTTC 2 cut(s) 80, 92
EarI CTCTTC 2 cut(s) 80, 92
Eco130I CCWWGG 4 cut(s) 560, 747, 805, 954
Eco24I GRGCYC 1 cut(s) 714
Eco31I GGTCTC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 455, 1130
EcoT14I CCWWGG 4 cut(s) 560, 747, 805, 954
EcoT22I ATGCAT 2 cut(s) 861, 1163
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 4 cut(s) 560, 747, 805, 954
FaeI CATG 7 cut(s) 443, 662, 809, 949, 996, 1161, 1165
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FatI CATG 7 cut(s) 439, 658, 805, 945, 992, 1157, 1161
FauI CCCGC 1 cut(s) 1053
FokI GGATG 4 cut(s) 578, 813, 930, 1035
FriOI GRGCYC 1 cut(s) 714
FspBI CTAG 5 cut(s) 748, 787, 850, 877, 922
GlaI GCGC 2 cut(s) 45, 124
HaeII RGCGCY 2 cut(s) 47, 126
HaeIII GGCC 2 cut(s) 712, 953
HapII CCGG 5 cut(s) 41, 105, 190, 950, 1151
HhaI GCGC 2 cut(s) 46, 125
Hin1II CATG 7 cut(s) 443, 662, 809, 949, 996, 1161, 1165
Hin6I GCGC 2 cut(s) 44, 123
HinP1I GCGC 2 cut(s) 44, 123
HindIII AAGCTT 2 cut(s) 543, 668
HinfI GANTC 4 cut(s) 37, 82, 324, 433
HpaII CCGG 5 cut(s) 41, 105, 190, 950, 1151
HphI GGTGA 2 cut(s) 272, 549
Hpy166II GTNNAC 2 cut(s) 744, 820
Hpy188I TCNGA 1 cut(s) 1196
Hpy188III TCNNGA 5 cut(s) 79, 699, 779, 907, 1167
Hpy8I GTNNAC 2 cut(s) 744, 820
Hpy99I CGWCG 2 cut(s) 151, 187
HpyAV CCTTC 3 cut(s) 233, 685, 980
HpyCH4III ACNGT 2 cut(s) 246, 798
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 396, 1054, 1126
HpyF3I CTNAG 5 cut(s) 229, 400, 546, 832, 839
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 7 cut(s) 443, 662, 809, 949, 996, 1161, 1165
HspAI GCGC 2 cut(s) 44, 123
KroI GCCGGC 2 cut(s) 949, 1150
KroNI GCCGGC 2 cut(s) 951, 1152
Kzo9I GATC 2 cut(s) 775, 1112
LmnI GCTCC 2 cut(s) 148, 173
Lsp1109I GCAGC 7 cut(s) 198, 341, 532, 547, 1066, 1141, 1159
LweI GCATC 2 cut(s) 619, 908
MaeI CTAG 5 cut(s) 748, 787, 850, 877, 922
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 924
MalI GATC 2 cut(s) 777, 1114
MboI GATC 2 cut(s) 775, 1112
MboII GAAGA 7 cut(s) 46, 52, 55, 67, 79, 82, 519
MhlI GDGCHC 4 cut(s) 386, 666, 714, 746
MluCI AATT 3 cut(s) 468, 1058, 1207
MlyI GAGTC 2 cut(s) 46, 442
MnlI CCTC 9 cut(s) 31, 83, 112, 139, 190, 238, 732, 834, 1012
Mph1103I ATGCAT 2 cut(s) 861, 1163
MroNI GCCGGC 2 cut(s) 949, 1150
MseI TTAA 2 cut(s) 287, 374
MslI CAYNNNNRTG 1 cut(s) 997
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 5 cut(s) 41, 105, 190, 950, 1151
MspR9I CCNGG 2 cut(s) 457, 1132
Mva1269I GAATGC 2 cut(s) 788, 859
MvaI CCWGG 2 cut(s) 457, 1132
MwoI GCNNNNNNNGC 4 cut(s) 134, 396, 1054, 1126
NaeI GCCGGC 2 cut(s) 951, 1152
NcoI CCATGG 1 cut(s) 805
NdeII GATC 2 cut(s) 775, 1112
NgoMIV GCCGGC 2 cut(s) 949, 1150
NlaIII CATG 7 cut(s) 443, 662, 809, 949, 996, 1161, 1165
NlaIV GGNNCC 6 cut(s) 33, 109, 169, 194, 712, 713
NsiI ATGCAT 2 cut(s) 861, 1163
NspI RCATGY 3 cut(s) 443, 1161, 1165
PaeI GCATGC 1 cut(s) 1161
PasI CCCWGGG 1 cut(s) 1131
PctI GAATGC 2 cut(s) 788, 859
PdiI GCCGGC 2 cut(s) 951, 1152
PfeI GAWTC 2 cut(s) 82, 324
PleI GAGTC 2 cut(s) 45, 441
PpsI GAGTC 2 cut(s) 45, 441
PshAI GACNNNNGTC 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 455, 1130
PspGI CCWGG 2 cut(s) 455, 1130
PspN4I GGNNCC 6 cut(s) 33, 109, 169, 194, 712, 713
PspOMI GGGCCC 1 cut(s) 710
PspPI GGNCC 2 cut(s) 710, 711
PstI CTGCAG 1 cut(s) 522
RsaI GTAC 2 cut(s) 278, 965
RsaNI GTAC 2 cut(s) 277, 964
RseI CAYNNNNRTG 1 cut(s) 997
SaqAI TTAA 2 cut(s) 287, 374
Sau3AI GATC 2 cut(s) 775, 1112
Sau96I GGNCC 2 cut(s) 710, 711
SchI GAGTC 2 cut(s) 46, 442
ScrFI CCNGG 2 cut(s) 457, 1132
SduI GDGCHC 4 cut(s) 386, 666, 714, 746
SfaNI GCATC 2 cut(s) 619, 908
SfcI CTRYAG 2 cut(s) 518, 686
SmiMI CAYNNNNRTG 1 cut(s) 997
SmlI CTYRAG 1 cut(s) 1037
SmoI CTYRAG 1 cut(s) 1037
SphI GCATGC 1 cut(s) 1161
Sse9I AATT 3 cut(s) 468, 1058, 1207
SsiI CCGC 9 cut(s) 5, 111, 126, 165, 177, 199, 490, 505, 1046
SspMI CTAG 5 cut(s) 748, 787, 850, 877, 922
StyD4I CCNGG 2 cut(s) 455, 1130
StyI CCWWGG 4 cut(s) 560, 747, 805, 954
TaaI ACNGT 2 cut(s) 246, 798
TaiI ACGT 1 cut(s) 54
TaqI TCGA 3 cut(s) 80, 156, 335
TasI AATT 3 cut(s) 468, 1058, 1207
TauI GCSGC 3 cut(s) 128, 168, 508
TfiI GAWTC 2 cut(s) 82, 324
Tru1I TTAA 2 cut(s) 287, 374
Tru9I TTAA 2 cut(s) 287, 374
TscAI CASTG 2 cut(s) 522, 1016
TseI GCWGC 7 cut(s) 211, 329, 520, 535, 1054, 1147, 1154
TspDTI ATGAA 4 cut(s) 46, 815, 852, 934
TspGWI ACGGA 5 cut(s) 13, 121, 135, 297, 746
TspRI CASTG 2 cut(s) 522, 1016
VneI GTGCAC 1 cut(s) 742
XceI RCATGY 3 cut(s) 443, 1161, 1165
XcmI CCANNNNNNNNNTGG 2 cut(s) 1096, 1196
XmaJI CCTAGG 1 cut(s) 747
XspI CTAG 5 cut(s) 748, 787, 850, 877, 922
Zsp2I ATGCAT 2 cut(s) 861, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.