Rh2DG200500
ERF Family

Major facilitator superfamily domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007474
Physical Location & Seq
Reverse (-)
18451784 .. 18456341
4558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG200500.1

Sequence Viewer

Length: 999 bp
ATGGCGGTGGTGATTGAGAGCTCCGTTTGGGAACCGAGCCCCGCGCTTTACATCTTCATCTTCTTCGCCTGCCTCTTCTCGATTCTCTTCTTCCCTTACGCCTCCGGCAGCACCAACAGCACCTCCGCCGCGAAAGCTGCTCCGTCTCTGTTCGACCATGGAGTCTCCCCCACCGCTTCGTCTTTTCGGTTCCAGAGGAACTTCCTGCTTCTCTATTCTCTCGCCTCAGTTATGGAAGGACTGTGGTCGGTGTTCGGCGAAGTTGAGCTAGCTTACTACGGATTAAGCAAAGAGAAAATGGTGCTTTATCTCTGCGTAGGGCTTGCGGCTTCGATTTCTATCGGTTCTTTCTTAGGAGTACTTTCTGATTTAATAGGTCCAAAGAAAGTTTGCTTCTTCTTTTGCTTTCTACACCTCCTTGTTGGCTTGTTGAAGAGAATCGTCCCTCATTCGAGTGTTTGGGTGGCGAGTATTTGTTTGTCAATCACAAGTTCAGTTTTTTCTTTCGGTTTCGAGACGTGGATGGTAGTTCAACATGAAGAGCAAGGGCACAGGCAAGATATGCTGAGTGAGACATTTTGGTTAATGAGTTTCTTCGAGTCAGCATGTCTTATTGGTAGCCAGGTTTTTTCAAATTGGCTTATCGGTAATAATGCAGAGAGAAGTATGGCGTCTCATTCCACTGCAGCTATCTTCTTGGCAGTAATAAGCTTAGTCTGTCTCACCAAGGGATGGAAAGAAATCCCACATAAAGTAGCTCTTAAGGAGTATAGGGCATCTTTTCGTGCATACATTGTTGGCGGTAAGAGTTGCAATCTGTTTTTAGCTTTTATCTTACTTCTGTTTTTTGCTTGCTTAAGCATACCATACTGCTCGAATACATGCAGTTTGAAAAATAATCAGTTATTGAATGAGTTTGAGTGGCGTAGTTCCAGAAACAGTGAAGCATGCGTATTCTACTCCCTCTGTCCTAGGGACATGCAATTTTCATTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_5

Protein Analysis

332

Amino Acids

37.13

Weight (kDa)

7.5

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_5 PF05631 63 - 249 1.6e-17 Sugar-tranasporters, 12 TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 732
AccII CGCG 2 cut(s) 44, 131
AciI CCGC 7 cut(s) 5, 42, 126, 129, 174, 326, 801
AcyI GRCGYC 1 cut(s) 671
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 732
AflII CTTAAG 2 cut(s) 761, 856
AgsI TTSAA 5 cut(s) 433, 533, 633, 892, 910
AjiI CACGTC 1 cut(s) 519
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 8 cut(s) 21, 137, 268, 272, 689, 711, 758, 827
AluI AGCT 8 cut(s) 21, 137, 268, 272, 689, 711, 758, 827
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 6 cut(s) 150, 169, 509, 566, 678, 725
ApeKI GCWGC 3 cut(s) 108, 137, 686
AspA2I CCTAGG 1 cut(s) 971
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 22, 715
AsuNHI GCTAGC 1 cut(s) 268
AvaII GGWCC 1 cut(s) 377
AvrII CCTAGG 1 cut(s) 971
BaeGI GKGCMC 1 cut(s) 552
BanII GRGCYC 2 cut(s) 23, 41
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 3 cut(s) 120, 124, 698
BccI CCATC 2 cut(s) 517, 726
BciT130I CCWGG 1 cut(s) 623
BcoDI GTCTC 6 cut(s) 150, 169, 509, 566, 678, 725
BfaI CTAG 2 cut(s) 269, 972
BfmI CTRYAG 1 cut(s) 684
BfrI CTTAAG 2 cut(s) 761, 856
BisI GCNGC 5 cut(s) 109, 129, 138, 327, 687
BlnI CCTAGG 1 cut(s) 971
BlsI GCNGC 5 cut(s) 110, 130, 139, 328, 688
BmcAI AGTACT 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 623
Bme18I GGWCC 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 519
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 33, 191
BmrFI CCNGG 1 cut(s) 623
BmsI GCATC 1 cut(s) 785
BmtI GCTAGC 1 cut(s) 272
BoxI GACNNNNGTC 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 671
BsaJI CCNNGG 3 cut(s) 157, 726, 971
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 732
Bse8I GATNNNNATC 1 cut(s) 338
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 3 cut(s) 157, 726, 971
BseGI GGATG 2 cut(s) 528, 737
BseJI GATNNNNATC 1 cut(s) 338
BseLI CCNNNNNNNGG 1 cut(s) 732
BseMII CTCAG 2 cut(s) 240, 557
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 3 cut(s) 120, 124, 698
Bsh1236I CGCG 2 cut(s) 44, 131
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 2 cut(s) 428, 989
BslI CCNNNNNNNGG 1 cut(s) 732
BsmAI GTCTC 6 cut(s) 150, 169, 509, 566, 678, 725
BsmBI CGTCTC 3 cut(s) 150, 509, 678
BsmFI GGGAC 2 cut(s) 428, 989
Bsp1286I GDGCHC 3 cut(s) 23, 41, 552
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 7 cut(s) 5, 42, 126, 129, 174, 326, 801
BspCNI CTCAG 2 cut(s) 239, 558
BspFNI CGCG 2 cut(s) 44, 131
BspLI GGNNCC 2 cut(s) 33, 191
BspMAI CTGCAG 1 cut(s) 688
BspOI GCTAGC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 534
BspTI CTTAAG 2 cut(s) 761, 856
BssECI CCNNGG 3 cut(s) 157, 726, 971
BssNI GRCGYC 1 cut(s) 671
BssT1I CCWWGG 3 cut(s) 157, 726, 971
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 2 cut(s) 243, 941
Bst6I CTCTTC 4 cut(s) 80, 92, 428, 534
BstACI GRCGYC 1 cut(s) 671
BstAFI CTTAAG 2 cut(s) 761, 856
BstAPI GCANNNNNTGC 1 cut(s) 562
BstC8I GCNNGC 5 cut(s) 70, 270, 324, 853, 949
BstDEI CTNAG 4 cut(s) 226, 352, 566, 712
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 528, 737
BstFNI CGCG 2 cut(s) 44, 131
BstHHI GCGC 1 cut(s) 46
BstMAI GTCTC 6 cut(s) 150, 169, 509, 566, 678, 725
BstMWI GCNNNNNNNGC 4 cut(s) 117, 134, 137, 562
BstNI CCWGG 1 cut(s) 623
BstNSI RCATGY 4 cut(s) 609, 885, 951, 982
BstPAI GACNNNNGTC 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 621
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 552
BstUI CGCG 2 cut(s) 44, 131
BstV1I GCAGC 3 cut(s) 120, 124, 698
BtgI CCRYGG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 519
BtsCI GGATG 2 cut(s) 528, 737
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 2 cut(s) 681, 946
Cac8I GCNNGC 5 cut(s) 70, 270, 324, 853, 949
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 377
CseI GACGC 1 cut(s) 660
Csp6I GTAC 1 cut(s) 359
CviAII CATG 6 cut(s) 158, 536, 606, 882, 948, 979
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 4 cut(s) 226, 352, 566, 712
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 4 cut(s) 80, 92, 428, 534
EarI CTCTTC 4 cut(s) 80, 92, 428, 534
EciI GGCGGA 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 3 cut(s) 157, 726, 971
Eco24I GRGCYC 2 cut(s) 23, 41
Eco47I GGWCC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 3 cut(s) 157, 726, 971
EcoT38I GRGCYC 2 cut(s) 23, 41
ErhI CCWWGG 3 cut(s) 157, 726, 971
Esp3I CGTCTC 3 cut(s) 150, 509, 678
FaeI CATG 6 cut(s) 161, 539, 609, 885, 951, 982
FalI AAGNNNNNCTT 2 cut(s) 744, 776
FaqI GGGAC 2 cut(s) 428, 989
FatI CATG 6 cut(s) 157, 535, 605, 881, 947, 978
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 5 cut(s) 109, 129, 138, 327, 687
FokI GGATG 2 cut(s) 535, 744
FriOI GRGCYC 2 cut(s) 23, 41
Fsp4HI GCNGC 5 cut(s) 109, 129, 138, 327, 687
FspBI CTAG 2 cut(s) 269, 972
GlaI GCGC 1 cut(s) 45
GluI GCNGC 5 cut(s) 109, 129, 138, 327, 687
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 660
HhaI GCGC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 671
Hin1II CATG 6 cut(s) 161, 539, 609, 885, 951, 982
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 709
HinfI GANTC 4 cut(s) 82, 162, 438, 599
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 22, 715
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 4 cut(s) 79, 193, 514, 933
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 243, 941
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 6 cut(s) 656, 686, 788, 813, 885, 982
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 134, 137, 562
HpyF3I CTNAG 4 cut(s) 226, 352, 566, 712
HpySE526I ACGT 1 cut(s) 518
Hsp92I GRCGYC 1 cut(s) 671
Hsp92II CATG 6 cut(s) 161, 539, 609, 885, 951, 982
HspAI GCGC 1 cut(s) 44
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 2 cut(s) 26, 145
LpnPI CCDG 8 cut(s) 82, 118, 206, 218, 538, 608, 635, 946
Lsp1109I GCAGC 3 cut(s) 120, 124, 698
LweI GCATC 1 cut(s) 785
MaeI CTAG 2 cut(s) 269, 972
MaeII ACGT 1 cut(s) 518
MhlI GDGCHC 3 cut(s) 23, 41, 552
MluCI AATT 2 cut(s) 634, 983
MlyI GAGTC 2 cut(s) 171, 608
MnlI CCTC 8 cut(s) 83, 112, 133, 189, 235, 425, 456, 974
MseI TTAA 5 cut(s) 284, 371, 584, 762, 857
MslI CAYNNNNRTG 1 cut(s) 453
MspCI CTTAAG 2 cut(s) 761, 856
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 623
MvaI CCWGG 1 cut(s) 623
MvnI CGCG 2 cut(s) 44, 131
MwoI GCNNNNNNNGC 4 cut(s) 117, 134, 137, 562
NcoI CCATGG 1 cut(s) 157
NheI GCTAGC 1 cut(s) 268
NlaIII CATG 6 cut(s) 161, 539, 609, 885, 951, 982
NlaIV GGNNCC 2 cut(s) 33, 191
NspI RCATGY 4 cut(s) 609, 885, 951, 982
PaeI GCATGC 1 cut(s) 951
PciSI GCTCTTC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 82, 438
PflMI CCANNNNNTGG 1 cut(s) 732
PkrI GCNGC 5 cut(s) 110, 130, 139, 328, 688
PleI GAGTC 2 cut(s) 170, 607
PpsI GAGTC 2 cut(s) 170, 607
PshAI GACNNNNGTC 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 2 cut(s) 33, 191
PspPI GGNCC 1 cut(s) 377
PstI CTGCAG 1 cut(s) 688
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 5 cut(s) 284, 371, 584, 762, 857
SatI GCNGC 5 cut(s) 109, 129, 138, 327, 687
Sau96I GGNCC 1 cut(s) 377
ScaI AGTACT 1 cut(s) 360
SchI GAGTC 2 cut(s) 171, 608
ScrFI CCNGG 1 cut(s) 623
SduI GDGCHC 3 cut(s) 23, 41, 552
SfaNI GCATC 1 cut(s) 785
SfcI CTRYAG 1 cut(s) 684
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 761, 856
SmoI CTYRAG 2 cut(s) 761, 856
SphI GCATGC 1 cut(s) 951
Sse9I AATT 2 cut(s) 634, 983
SsiI CCGC 7 cut(s) 5, 42, 126, 129, 174, 326, 801
SspMI CTAG 2 cut(s) 269, 972
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 621
StyI CCWWGG 3 cut(s) 157, 726, 971
TaaI ACNGT 2 cut(s) 243, 941
TaiI ACGT 1 cut(s) 521
TaqI TCGA 7 cut(s) 80, 153, 332, 452, 513, 597, 875
TasI AATT 2 cut(s) 634, 983
TatI WGTACW 1 cut(s) 358
TauI GCSGC 2 cut(s) 131, 329
TfiI GAWTC 2 cut(s) 82, 438
Tru1I TTAA 5 cut(s) 284, 371, 584, 762, 857
Tru9I TTAA 5 cut(s) 284, 371, 584, 762, 857
TscAI CASTG 2 cut(s) 688, 946
TseI GCWGC 3 cut(s) 108, 137, 686
TspDTI ATGAA 3 cut(s) 46, 552, 978
TspGWI ACGGA 3 cut(s) 13, 132, 294
TspRI CASTG 2 cut(s) 688, 946
Van91I CCANNNNNTGG 1 cut(s) 732
Vha464I CTTAAG 2 cut(s) 761, 856
VpaK11BI GGWCC 1 cut(s) 377
XceI RCATGY 4 cut(s) 609, 885, 951, 982
XmaJI CCTAGG 1 cut(s) 971
XspI CTAG 2 cut(s) 269, 972
ZrmI AGTACT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.