Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006705

Physical Location & Seq

Genomic Coordinates Forward (+)

10182251 .. 10183370

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAGTCGTTCAGGTCAGCCTCCGGATCTTAAGAAGTACATGGATAAGAAGCTCCAAATCAAGCTTAATGCTAACCGAATGGTTACTGGAACTCTTCGTGGGTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAGGTGAACGGTAACGACAAAACCGACATCGGGATGGTGGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCAGTGGGCAGATCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0034719 GO:0035770 GO:0036464 GO:0043170 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045495 GO:0046483 GO:0060293 GO:0071004 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

80

Amino Acids

8.84

Weight (kDa)

9.22

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	2 - 45	4.1e-15	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23930 AT3G11500 AT3G11500
fragaria_vesca	FvH4_6g19160
malus_domestica	MD12G1027400.v1.1
prunus_persica	Prupe.7G104100_v2.0.a1
pyrus_communis	pycom12g02630 pycom14g02630
rosa_chinensis	RchiOBHm_Chr3g0456431 RchiOBHm_Chr3g0474271
rosa_multiflora	Rmu_sc0000041.1_g000021 Rmu_sc0004507.1_g000019 Rmu_sc0007753.1_g000006
rosa_roxburghii	Rroxscaffold_6G00407390
rosa_rugosa	Rorug03G0110900 Rorug03G0139900 Rorug03G0343100 Rorug04G0442800 Rorug05G0558300
rosa_samantha	Rh1AG194800 Rh2BG255200 Rh7BG169600
rosa_wichuraiana	Rw3G017380 Rw3G018710 Rw5G014960 Rw7G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	22
AclWI	GGATC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	171
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	212, 221
AluBI	AGCT	3 cut(s)	52, 64, 215
AluI	AGCT	3 cut(s)	52, 64, 215
AlwI	GGATC	1 cut(s)	33
Aor13HI	TCCGGA	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	157, 193
BccI	CCATC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	106
BfrI	CTTAAG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse1I	ACTGG	2 cut(s)	91, 224
BseAI	TCCGGA	1 cut(s)	22
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseNI	ACTGG	2 cut(s)	91, 224
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	25, 106, 233
BspEI	TCCGGA	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	114
BspPI	GGATC	1 cut(s)	33
BspTI	CTTAAG	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	91, 224
BssMI	GATC	3 cut(s)	25, 106, 233
Bst4CI	ACNGT	3 cut(s)	139, 152, 208
Bst6I	CTCTTC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	3 cut(s)	28, 109, 236
BstMBI	GATC	3 cut(s)	25, 106, 233
BstX2I	RGATCY	2 cut(s)	25, 233
BstYI	RGATCY	2 cut(s)	25, 233
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	135, 204, 231
CciI	TCATGA	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	40, 115
CviJI	RGCY	4 cut(s)	19, 52, 64, 215
CviKI_1	RGCY	4 cut(s)	19, 52, 64, 215
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	3 cut(s)	27, 108, 235
DpnII	GATC	3 cut(s)	25, 106, 233
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
FaeI	CATG	2 cut(s)	43, 118
FaiI	YATR	2 cut(s)	41, 116
FatI	CATG	2 cut(s)	39, 114
FbaI	TGATCA	1 cut(s)	106
FokI	GGATG	1 cut(s)	187
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	2 cut(s)	43, 118
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	2 cut(s)	4, 118
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	157, 193
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	4 cut(s)	23, 115, 172, 218
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	3 cut(s)	139, 152, 208
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	43, 118
Kpn2I	TCCGGA	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	25, 106, 233
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	3 cut(s)	36, 72, 237
MaeIII	GTNAC	3 cut(s)	82, 152, 202
MalI	GATC	3 cut(s)	27, 108, 235
MboI	GATC	3 cut(s)	25, 106, 233
MboII	GAAGA	2 cut(s)	86, 228
MflI	RGATCY	2 cut(s)	25, 233
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	30, 136, 182
MroI	TCCGGA	1 cut(s)	22
MseI	TTAA	2 cut(s)	30, 66
MslI	CAYNNNNRTG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	29
MspI	CCGG	1 cut(s)	23
NdeII	GATC	3 cut(s)	25, 106, 233
NlaIII	CATG	2 cut(s)	43, 118
NmuCI	GTSAC	1 cut(s)	202
PagI	TCATGA	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	25, 233
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	30, 66
Sau3AI	GATC	3 cut(s)	25, 106, 233
SchI	GAGTC	1 cut(s)	13
SetI	ASST	5 cut(s)	16, 54, 66, 147, 217
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
TaaI	ACNGT	3 cut(s)	139, 152, 208
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	30, 66
Tru9I	TTAA	2 cut(s)	30, 66
TscAI	CASTG	3 cut(s)	142, 211, 231
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	103, 131
TspRI	CASTG	3 cut(s)	142, 211, 231
Vha464I	CTTAAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.