Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006705

Physical Location & Seq

Genomic Coordinates Reverse (-)

2371876 .. 2375576

Gene Structure 3701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAGCAGATCAGGCCAGCCTCCGGATCTGAAAAAGTACATGGACAAAAAGCTCCAAATCAAGATGAATGCCAATCGCATGGTTGTTGGAACCCTCCGTGGTTTTGACCAATTCATGAACCTGGTCGTTGACAACACCGTAGAAGTCAACGGCGACGAAAAGAATGAAATTGGCATGGTGGTGATCAGGGGCAATAGTGTAGTTACAGTTGAAGCACTCGAACCGGTGGCTAAAATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0034719 GO:0035770 GO:0036464 GO:0043170 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045495 GO:0046483 GO:0060293 GO:0071004 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

81

Amino Acids

8.95

Weight (kDa)

8.04

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23930 AT3G11500 AT3G11500
fragaria_vesca	FvH4_6g19160
malus_domestica	MD12G1027400.v1.1
prunus_persica	Prupe.7G104100_v2.0.a1
pyrus_communis	pycom12g02630 pycom14g02630
rosa_chinensis	RchiOBHm_Chr3g0456431 RchiOBHm_Chr3g0474271
rosa_multiflora	Rmu_sc0000041.1_g000021 Rmu_sc0004507.1_g000019 Rmu_sc0007753.1_g000006
rosa_roxburghii	Rroxscaffold_6G00407390
rosa_rugosa	Rorug03G0110900 Rorug03G0139900 Rorug03G0343100 Rorug04G0442800 Rorug05G0558300
rosa_samantha	Rh1AG194800 Rh2BG255200 Rh7BG169600
rosa_wichuraiana	Rw3G017380 Rw3G018710 Rw5G014960 Rw7G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	22
AclWI	GGATC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgeI	ACCGGT	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
AlwI	GGATC	1 cut(s)	33
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	1 cut(s)	13
AsiGI	ACCGGT	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	122
BclI	TGATCA	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	2 cut(s)	22, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	15
BshTI	ACCGGT	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	23, 224
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	8, 25, 183
BspANI	GGCC	1 cut(s)	15
BspEI	TCCGGA	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	3 cut(s)	8, 25, 183
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	139, 208
BstC8I	GCNNGC	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	97
BstKTI	GATC	3 cut(s)	11, 28, 186
BstMBI	GATC	3 cut(s)	8, 25, 183
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	17
CciI	TCATGA	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	223
CsiI	ACCWGGT	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	37
CspAI	ACCGGT	1 cut(s)	223
CviAII	CATG	4 cut(s)	40, 79, 115, 175
CviJI	RGCY	4 cut(s)	15, 19, 52, 230
CviKI_1	RGCY	4 cut(s)	15, 19, 52, 230
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	3 cut(s)	10, 27, 185
DpnII	GATC	3 cut(s)	8, 25, 183
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	43, 82, 118, 178
FaiI	YATR	4 cut(s)	41, 80, 116, 176
FatI	CATG	4 cut(s)	39, 78, 114, 174
FbaI	TGATCA	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	2 cut(s)	23, 224
Hin1II	CATG	4 cut(s)	43, 82, 118, 178
HincII	GTYRAC	2 cut(s)	130, 148
HindII	GTYRAC	2 cut(s)	130, 148
HpaII	CCGG	2 cut(s)	23, 224
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	130, 148
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	23, 61, 115
Hpy8I	GTNNAC	2 cut(s)	130, 148
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	139, 208
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
Hsp92II	CATG	4 cut(s)	43, 82, 118, 178
Kpn2I	TCCGGA	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	8, 25, 183
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	6 cut(s)	29, 36, 107, 134, 172, 237
MabI	ACCWGGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	3 cut(s)	10, 27, 185
MboI	GATC	3 cut(s)	8, 25, 183
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	2 cut(s)	110, 168
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	30, 104
MroI	TCCGGA	1 cut(s)	22
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	2 cut(s)	23, 224
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	3 cut(s)	8, 25, 183
NlaIII	CATG	4 cut(s)	43, 82, 118, 178
NlaIV	GGNNCC	1 cut(s)	91
PagI	TCATGA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	179
Sau3AI	GATC	3 cut(s)	8, 25, 183
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	2 cut(s)	54, 123
SexAI	ACCWGGT	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	110, 168
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	139, 208
TaqI	TCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	110, 168
TatI	WGTACW	1 cut(s)	36
TspDTI	ATGAA	4 cut(s)	80, 103, 131, 180
TspGWI	ACGGA	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.