Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006705

Physical Location & Seq

Genomic Coordinates Reverse (-)

8944341 .. 8951343

Gene Structure 7003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0110900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2826 bp

ATGCAGCACAATATATTTACTACAATGCGTAGCTTGAAGATCATGGATGGGTGTAAGGGCACCCAGGTGTTTGCCATTAATCCATCTGGAACAACCCCCACAAATGGTGGAGTAGGAGACAAGGTTGGTCACAGCCGGGTCAACTCGGTTCGATCCAGATCGAACTGGAGTTTCCAAGCCCCGAACCCGACCGGAAACAATGCCTTGGTCGAGAGTCTTCTTCCCTATGAACTCCCATCGTCGGATCTCCTCGAACCCCAAATCGAGCCTTGCCTCAAGACCGTTGATTTTGTCGAAACGCTGGCTGATGTGTACCGCAGGATTGAGAATTGCCCGCAATTCGAGAAATCTAAGATGTACGTGGAGCAATGCGCGATCTTTCGGGGTATGTCGGATCCGAAACTGTTCCGGAGGAGTCTCCGGTCGGCGAGGCAGCACGCGGTGGATGTCCACACGAAAGTGGTGCTTGCGGCGTGGTTGAGGTACGAGAGGAGGGAGGATGAGCTGGTTGGGTCATCTTCGATGACTTGTTGCGGTAGAAATGTTGAATGTCCCAAGGCTAGTTTGGTAGCTGGGTATGATCCGGAGTCTGTCTATGATTCATGTTGCTGCTCTCGGAGCGGTGGCGATGTAGATGGTGAGACTGCGGATGCGGATGAAGAATGCTCAACTTCGAAGGAGGAAGAAGCTGACATGTCATTTTACATTGGAGAGGATGAGATAATGTGTGTTAGGTATAAGATTGCATCGCTCTCGACACCCTTTAGGACAATGTTGTATGGGGGCTTTACGGAGACGAGGAGGCAGAAGATAAATTTCTCACAGAATGGAGTTTCTCCGGAGGCAATGAGAGCAGTGGAGGTATTTAGCCGGACTGGAAAGTTGGATTCTTTCGAAGTGCGAATTGTTTTGGACTTGCTTTCGTTTTCAAACAGGTTCTGTTGTGATGAGTTGAAGTCAGCTTGTGATGCTCATTTGGCTTCCCTGGTCTGTGAATTGGAGGATGCAATGGTGTTGGTTGACTATGGATTGGAGGAGACTGCTTATCTTCTAGTGGCGGCTTGTTTGCAGGTGTTTTTGAGAGAGCTTCCGAATTCGGTGCACAATCCTAACATGATGAGATTGTTTTGTAGTTCAGAAGCTAGGCAAAGATTGGCCATGGCCGGGCATTCTTCTTTTGTTTTGTATTATTTCTTGAGCCAGATTGCCATGGAGGAAGACATGAAGTCCAACACGACAGTGATGCTTCTAGAGAGGCTGGGAGAGTGTGCTACCGAAAGTTGGGAGAAGCAACTCGCATTTCACCAGTTGGGGGTTGTGATGCTTGAGAGGCAGGAATATAAAGATGCTCAGTGCTGGTTTGAAGCAGCCATTGAGGCAGGTCATGTGTATTCCATGGCGGGTGTTGCAAGGGCCAAATTCAAGCGTGGCCATAAATACGTAGCGTACAAGCAGATGAACTCGCTAATTTCGGAGAATACACCAGTTGGGTGGATGTATCAGGAGCGTTCTCTGTATTCTAATGGAAAGGAAAAGATGATGGATTTGAATACTGCTACTCAATTGGATCCAACTCTATCTTATCCATACAAGTTTAGGGCTGTTTCTCTATTGGAAGAGAATCAGATCGGATCAGCCATCACAGAGATCAATAAGATTATTAGTTTCAAGGTCTCCCCTGATTGTCTTGAACTGCGGGCTTGGTTTTCAATTGCCATAGAGGATTTTGAAGGAGCTCTGAGAGATGTCAGGGCACTTTTGACTTTGGACCCGAATTACATGATGTTTCATGGGAAATTGCATGGTGACCATCTTGTAGAGCTGCTCCAACCTCTTGTCCAGCAATGGAGTCAGGCTGATTGTTGGATGCAACTATATGATCGATGGTCCTCTGTGGATGATATTGGCTCTCTAGCTGTTGTACATCATATGTTGGCAAATGACCCTGGGAAGAGCCTTCTACGCTTTAGGCAGTCTCTCCTTCTATTACGGTTGAATTGTCAAAAGTCCGCAATGCATAGTCTGCGATTGGCTCGAAATCATTCTACTTCTGAACATGAACGGCTTGTGTATGAAGGATGGATATTGTATGACACTGGCCATCGTGAAGAAGCATTGGCAAAGGCTGAGGAGTCCATTTCAATTCAAAGATCATTTGAAGCATTTTTCCTAAAGGCTTATGCTTTAGCAGACTCAAATCTTGATTCTGAGTCTTCAACATATGTGATACAGCTTCTGGAGGAAGCACTCAGATGCCCTTCGGACGGCCTTAGAAAAGGACAAGCGCTAAATAATTTAGGAAGTGTCTACGTAGATTCTGAGAAGCTGGATCTTGCTGCTGACTGCTACACAAATGCACTCAACATTAAGCATACACGAGCACATCAGGGTCTAGCACGAGTATATCATCTTAAAAATCAACGCAAAGCTGCATATGATGAGATGACAAAGCTGATAGAGAAGGCTCGCAACAATGCATCAGCTTATGAGAAACGTTCAGAATACTGTGATCGTGACATGGCAAAGAATGATCTAAGTATGGCAACACAATTAGATCCATTGAGGACATATCCGTACAGATATAGGGCAGCAGTTTTGATGGATGACCACAAAGAAGCAGAAGCTATTGAAGAGCTAAGTAAGGCCATAGCTTTCAAGCCGGATCTCCAGCTTCTACATCTTCGAGCAGCGTTCCATGAATCTATGAGTGATTTTGTGTCCACCGTCCGAGACTGTGAAGCAGCCCTCTGCCTTGACCCCAACCATGCCGACACTCATGAACTCTATGGTAAAGCACGGGAGCGCTTAAATGAACAACAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0034719 GO:0035770 GO:0036464 GO:0043170 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045495 GO:0046483 GO:0060293 GO:0071004 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

941

Amino Acids

106.8

Weight (kDa)

5.59

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23930 AT3G11500 AT3G11500
fragaria_vesca	FvH4_6g19160
malus_domestica	MD12G1027400.v1.1
prunus_persica	Prupe.7G104100_v2.0.a1
pyrus_communis	pycom12g02630 pycom14g02630
rosa_chinensis	RchiOBHm_Chr3g0456431 RchiOBHm_Chr3g0474271
rosa_multiflora	Rmu_sc0000041.1_g000021 Rmu_sc0004507.1_g000019 Rmu_sc0007753.1_g000006
rosa_roxburghii	Rroxscaffold_6G00407390
rosa_rugosa	Rorug03G0110900 Rorug03G0139900 Rorug03G0343100 Rorug04G0442800 Rorug05G0558300
rosa_samantha	Rh1AG194800 Rh2BG255200 Rh7BG169600
rosa_wichuraiana	Rw3G017380 Rw3G018710 Rw5G014960 Rw7G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1060
Acc36I	ACCTGC	2 cut(s)	1060, 1370
AccB1I	GGYRCC	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	2307
AccII	CGCG	2 cut(s)	374, 440
AccIII	TCCGGA	3 cut(s)	408, 583, 838
AclI	AACGTT	1 cut(s)	2494
AcoI	YGGCCR	4 cut(s)	1155, 1161, 1429, 2098
AcsI	RAATTY	3 cut(s)	814, 1093, 1418
AdeI	CACNNNGTG	1 cut(s)	442
AfaI	GTAC	6 cut(s)	314, 359, 485, 1448, 1923, 2576
AfeI	AGCGCT	2 cut(s)	2286, 2804
AfiI	CCNNNNNNNGG	6 cut(s)	104, 241, 1164, 1281, 1312, 2264
AflIII	ACRYGT	1 cut(s)	693
AhdI	GACNNNNNGTC	1 cut(s)	1225
AjnI	CCWGG	3 cut(s)	63, 984, 1945
AleI	CACNNNNGTG	3 cut(s)	65, 458, 1238
Alw21I	GWGCWC	3 cut(s)	1104, 1738, 2383
Alw26I	GTCTC	8 cut(s)	111, 422, 635, 788, 1031, 1678, 1980, 2724
Alw44I	GTGCAC	1 cut(s)	1100
AlwNI	CAGNNNCTG	2 cut(s)	939, 2236
Aor13HI	TCCGGA	3 cut(s)	408, 583, 838
Aor51HI	AGCGCT	2 cut(s)	2286, 2804
AoxI	GGCC	7 cut(s)	1155, 1161, 1413, 1429, 2098, 2266, 2643
ApaLI	GTGCAC	1 cut(s)	1100
ApoI	RAATTY	3 cut(s)	814, 1093, 1418
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	2 cut(s)	404, 2041
AspLEI	GCGC	3 cut(s)	374, 2287, 2805
AspS9I	GGNCC	3 cut(s)	1413, 1768, 1887
AsuC2I	CCSGG	2 cut(s)	137, 1165
AsuHPI	GGTGA	3 cut(s)	650, 1295, 1817
AsuII	TTCGAA	2 cut(s)	674, 894
AvaII	GGWCC	2 cut(s)	1768, 1887
BaeGI	GKGCMC	3 cut(s)	62, 1104, 1756
BalI	TGGCCA	3 cut(s)	1157, 1431, 2100
BamHI	GGATCC	2 cut(s)	394, 1567
BanI	GGYRCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	1738
BauI	CACGAG	2 cut(s)	2376, 2397
BbsI	GAAGAC	3 cut(s)	209, 1224, 2205
Bbv12I	GWGCWC	3 cut(s)	1104, 1738, 2383
BbvCI	CCTCAGC	1 cut(s)	2127
BceAI	ACGGC	2 cut(s)	2078, 2281
BcgI	CGANNNNNNTGC	8 cut(s)	445, 479, 735, 769, 1081, 1115, 1225, 1259
BciT130I	CCWGG	3 cut(s)	65, 986, 1947
BcnI	CCSGG	2 cut(s)	137, 1165
BcoDI	GTCTC	8 cut(s)	111, 422, 635, 788, 1031, 1678, 1980, 2724
BfaI	CTAG	6 cut(s)	561, 1052, 1143, 1250, 1913, 2393
BfoI	RGCGCY	2 cut(s)	2288, 2806
BfuAI	ACCTGC	2 cut(s)	1060, 1370
BglI	GCCNNNNNGGC	1 cut(s)	1376
Bme1390I	CCNGG	5 cut(s)	65, 137, 986, 1165, 1947
Bme18I	GGWCC	2 cut(s)	1768, 1887
BmeRI	GACNNNNNGTC	1 cut(s)	1225
BmgT120I	GGNCC	3 cut(s)	1413, 1768, 1887
BmiI	GGNNCC	4 cut(s)	61, 396, 1569, 1770
BmrFI	CCNGG	5 cut(s)	65, 137, 986, 1165, 1947
BpiI	GAAGAC	3 cut(s)	209, 1224, 2205
BpmI	CTGGAG	3 cut(s)	187, 2258, 2651
Bpu10I	CCTNAGC	1 cut(s)	2127
Bpu14I	TTCGAA	2 cut(s)	674, 894
BpuEI	CTTGAG	3 cut(s)	260, 1216, 1346
BpuMI	CCSGG	2 cut(s)	137, 1165
Bsa29I	ATCGAT	1 cut(s)	1882
BsaAI	YACGTR	3 cut(s)	361, 1441, 2311
BsaBI	GATNNNNATC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	1678
BsaJI	CCNNGG	9 cut(s)	63, 204, 555, 984, 1158, 1209, 1395, 1945, 1946
BsaWI	WCCGGW	5 cut(s)	191, 408, 420, 583, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	6 cut(s)	104, 241, 1164, 1281, 1312, 2264
Bse1I	ACTGG	5 cut(s)	170, 880, 1306, 1484, 2101
Bse3DI	GCAATG	5 cut(s)	374, 852, 1014, 1850, 2019
Bse8I	GATNNNNATC	1 cut(s)	157
BseAI	TCCGGA	3 cut(s)	408, 583, 838
BseBI	CCWGG	3 cut(s)	65, 986, 1947
BseCI	ATCGAT	1 cut(s)	1882
BseDI	CCNNGG	9 cut(s)	63, 204, 555, 984, 1158, 1209, 1395, 1945, 1946
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	6 cut(s)	104, 241, 1164, 1281, 1312, 2264
BseMI	GCAATG	5 cut(s)	374, 852, 1014, 1850, 2019
BseMII	CTCAG	6 cut(s)	1364, 1730, 2118, 2199, 2263, 2310
BseNI	ACTGG	5 cut(s)	170, 880, 1306, 1484, 2101
BseRI	GAGGAG	6 cut(s)	239, 427, 505, 814, 1049, 2144
BseSI	GKGCMC	3 cut(s)	62, 1104, 1756
BseYI	CCCAGC	2 cut(s)	572, 1258
Bsh1236I	CGCG	2 cut(s)	374, 440
Bsh1285I	CGRYCG	2 cut(s)	192, 425
BshFI	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
BshNI	GGYRCC	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	1882
BsiEI	CGRYCG	2 cut(s)	192, 425
BsiHKAI	GWGCWC	3 cut(s)	1104, 1738, 2383
BsiSI	CCGG	9 cut(s)	136, 192, 409, 421, 584, 839, 871, 1164, 2660
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	6 cut(s)	104, 241, 1164, 1281, 1312, 2264
BsmAI	GTCTC	8 cut(s)	111, 422, 635, 788, 1031, 1678, 1980, 2724
BsmBI	CGTCTC	1 cut(s)	788
BsmFI	GGGAC	1 cut(s)	537
BsmI	GAATGC	2 cut(s)	668, 1168
BsnI	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
Bso31I	GGTCTC	1 cut(s)	1678
Bsp119I	TTCGAA	2 cut(s)	674, 894
Bsp1286I	GDGCHC	5 cut(s)	62, 1104, 1738, 1756, 2383
Bsp13I	TCCGGA	3 cut(s)	408, 583, 838
Bsp1407I	TGTACA	1 cut(s)	1921
Bsp19I	CCATGG	3 cut(s)	1158, 1209, 1395
BspANI	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
BspCNI	CTCAG	6 cut(s)	1363, 1731, 2119, 2200, 2262, 2311
BspDI	ATCGAT	1 cut(s)	1882
BspEI	TCCGGA	3 cut(s)	408, 583, 838
BspFNI	CGCG	2 cut(s)	374, 440
BspHI	TCATGA	1 cut(s)	2776
BspLI	GGNNCC	4 cut(s)	61, 396, 1569, 1770
BspMI	ACCTGC	2 cut(s)	1060, 1370
BspQI	GCTCTTC	2 cut(s)	1946, 2625
BspT104I	TTCGAA	2 cut(s)	674, 894
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	1678
BsrBI	CCGCTC	1 cut(s)	621
BsrDI	GCAATG	5 cut(s)	374, 852, 1014, 1850, 2019
BsrGI	TGTACA	1 cut(s)	1921
BsrI	ACTGG	5 cut(s)	170, 880, 1306, 1484, 2101
BssECI	CCNNGG	9 cut(s)	63, 204, 555, 984, 1158, 1209, 1395, 1945, 1946
BssSI	CACGAG	2 cut(s)	2376, 2397
BssT1I	CCWWGG	5 cut(s)	204, 555, 1158, 1209, 1395
Bst2BI	CACGAG	2 cut(s)	2376, 2397
Bst2UI	CCWGG	3 cut(s)	65, 986, 1947
Bst4CI	ACNGT	7 cut(s)	283, 405, 1240, 1992, 2507, 2725, 2735
Bst6I	CTCTTC	3 cut(s)	1611, 1946, 2625
BstAPI	GCANNNNNTGC	1 cut(s)	2023
BstAUI	TGTACA	1 cut(s)	1921
BstBAI	YACGTR	3 cut(s)	361, 1441, 2311
BstBI	TTCGAA	2 cut(s)	674, 894
BstC8I	GCNNGC	6 cut(s)	303, 335, 438, 468, 1698, 2467
BstDSI	CCRYGG	3 cut(s)	1158, 1209, 1395
BstEII	GGTNACC	1 cut(s)	1805
BstFNI	CGCG	2 cut(s)	374, 440
BstH2I	RGCGCY	2 cut(s)	2288, 2806
BstHHI	GCGC	3 cut(s)	374, 2287, 2805
BstMAI	GTCTC	8 cut(s)	111, 422, 635, 788, 1031, 1678, 1980, 2724
BstMCI	CGRYCG	2 cut(s)	192, 425
BstMWI	GCNNNNNNNGC	9 cut(s)	618, 851, 968, 977, 1330, 1376, 1406, 1962, 2023
BstNI	CCWGG	3 cut(s)	65, 986, 1947
BstNSI	RCATGY	1 cut(s)	697
BstPI	GGTNACC	1 cut(s)	1805
BstSCI	CCNGG	5 cut(s)	63, 135, 984, 1163, 1945
BstSLI	GKGCMC	3 cut(s)	62, 1104, 1756
BstSNI	TACGTA	2 cut(s)	1441, 2311
BstUI	CGCG	2 cut(s)	374, 440
BstV2I	GAAGAC	3 cut(s)	209, 1224, 2205
BstX2I	RGATCY	6 cut(s)	244, 394, 1567, 2329, 2554, 2662
BstXI	CCANNNNNNTGG	1 cut(s)	1491
BstYI	RGATCY	6 cut(s)	244, 394, 1567, 2329, 2554, 2662
Bsu15I	ATCGAT	1 cut(s)	1882
BsuRI	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
BsuTUI	ATCGAT	1 cut(s)	1882
BtgI	CCRYGG	3 cut(s)	1158, 1209, 1395
BtgZI	GCGATG	2 cut(s)	642, 732
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	4 cut(s)	861, 1245, 1358, 2094
BveI	ACCTGC	2 cut(s)	1060, 1370
Cac8I	GCNNGC	6 cut(s)	303, 335, 438, 468, 1698, 2467
CaiI	CAGNNNCTG	2 cut(s)	939, 2236
CciI	TCATGA	1 cut(s)	2776
CfoI	GCGC	3 cut(s)	374, 2287, 2805
Cfr13I	GGNCC	3 cut(s)	1413, 1768, 1887
ClaI	ATCGAT	1 cut(s)	1882
Csp6I	GTAC	6 cut(s)	313, 358, 484, 1447, 1922, 2575
CviQI	GTAC	6 cut(s)	313, 358, 484, 1447, 1922, 2575
DraIII	CACNNNGTG	1 cut(s)	442
DriI	GACNNNNNGTC	1 cut(s)	1225
EaeI	YGGCCR	4 cut(s)	1155, 1161, 1429, 2098
Eam1104I	CTCTTC	3 cut(s)	1611, 1946, 2625
Eam1105I	GACNNNNNGTC	1 cut(s)	1225
EarI	CTCTTC	3 cut(s)	1611, 1946, 2625
Ecl136II	GAGCTC	1 cut(s)	1736
Eco105I	TACGTA	2 cut(s)	1441, 2311
Eco130I	CCWWGG	5 cut(s)	204, 555, 1158, 1209, 1395
Eco24I	GRGCYC	1 cut(s)	1738
Eco31I	GGTCTC	1 cut(s)	1678
Eco47I	GGWCC	2 cut(s)	1768, 1887
Eco47III	AGCGCT	2 cut(s)	2286, 2804
Eco53kI	GAGCTC	1 cut(s)	1736
Eco91I	GGTNACC	1 cut(s)	1805
EcoICRI	GAGCTC	1 cut(s)	1736
EcoO65I	GGTNACC	1 cut(s)	1805
EcoRI	GAATTC	1 cut(s)	1093
EcoRII	CCWGG	3 cut(s)	63, 984, 1945
EcoT14I	CCWWGG	5 cut(s)	204, 555, 1158, 1209, 1395
EcoT22I	ATGCAT	2 cut(s)	2019, 2479
EcoT38I	GRGCYC	1 cut(s)	1738
ErhI	CCWWGG	5 cut(s)	204, 555, 1158, 1209, 1395
Esp3I	CGTCTC	1 cut(s)	788
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	1 cut(s)	537
FauI	CCCGC	3 cut(s)	342, 1393, 1689
FauNDI	CATATG	3 cut(s)	1929, 2221, 2434
FblI	GTMKAC	1 cut(s)	2307
FriOI	GRGCYC	1 cut(s)	1738
FspBI	CTAG	6 cut(s)	561, 1052, 1143, 1250, 1913, 2393
GlaI	GCGC	3 cut(s)	373, 2286, 2804
GsaI	CCCAGC	2 cut(s)	576, 1262
GsuI	CTGGAG	3 cut(s)	187, 2258, 2651
HaeII	RGCGCY	2 cut(s)	2288, 2806
HaeIII	GGCC	7 cut(s)	1157, 1163, 1415, 1431, 2100, 2268, 2645
HapII	CCGG	9 cut(s)	136, 192, 409, 421, 584, 839, 871, 1164, 2660
HhaI	GCGC	3 cut(s)	374, 2287, 2805
Hin6I	GCGC	3 cut(s)	372, 2285, 2803
HinP1I	GCGC	3 cut(s)	372, 2285, 2803
HincII	GTYRAC	2 cut(s)	142, 1021
HindII	GTYRAC	2 cut(s)	142, 1021
HpaII	CCGG	9 cut(s)	136, 192, 409, 421, 584, 839, 871, 1164, 2660
HphI	GGTGA	3 cut(s)	650, 1295, 1817
Hpy166II	GTNNAC	7 cut(s)	142, 313, 451, 1021, 1102, 2308, 2721
Hpy8I	GTNNAC	7 cut(s)	142, 313, 451, 1021, 1102, 2308, 2721
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	7 cut(s)	670, 1724, 1967, 1991, 2069, 2268, 2455
HpyCH4III	ACNGT	7 cut(s)	283, 405, 1240, 1992, 2507, 2725, 2735
HpyCH4IV	ACGT	4 cut(s)	360, 1440, 2310, 2494
HpyF10VI	GCNNNNNNNGC	9 cut(s)	618, 851, 968, 977, 1330, 1376, 1406, 1962, 2023
HpySE526I	ACGT	4 cut(s)	360, 1440, 2310, 2494
HspAI	GCGC	3 cut(s)	372, 2285, 2803
Kpn2I	TCCGGA	3 cut(s)	408, 583, 838
LguI	GCTCTTC	2 cut(s)	1946, 2625
LmnI	GCTCC	6 cut(s)	364, 618, 1504, 1733, 1830, 2800
MaeI	CTAG	6 cut(s)	561, 1052, 1143, 1250, 1913, 2393
MaeII	ACGT	4 cut(s)	360, 1440, 2310, 2494
MaeIII	GTNAC	3 cut(s)	128, 1805, 2513
MbiI	CCGCTC	1 cut(s)	621
MfeI	CAATTG	2 cut(s)	1562, 1710
MflI	RGATCY	6 cut(s)	244, 394, 1567, 2329, 2554, 2662
MhlI	GDGCHC	5 cut(s)	62, 1104, 1738, 1756, 2383
MlsI	TGGCCA	3 cut(s)	1157, 1431, 2100
MluNI	TGGCCA	3 cut(s)	1157, 1431, 2100
MlyI	GAGTC	7 cut(s)	223, 424, 596, 1858, 2141, 2186, 2219
MmeI	TCCRAC	7 cut(s)	222, 372, 864, 1254, 1595, 1844, 1852
Mox20I	TGGCCA	3 cut(s)	1157, 1431, 2100
Mph1103I	ATGCAT	2 cut(s)	2019, 2479
MroI	TCCGGA	3 cut(s)	408, 583, 838
MroXI	GAANNNNTTC	2 cut(s)	404, 2041
MscI	TGGCCA	3 cut(s)	1157, 1431, 2100
MseI	TTAA	4 cut(s)	78, 2367, 2412, 2807
MslI	CAYNNNNRTG	4 cut(s)	65, 458, 1238, 2251
Msp20I	TGGCCA	3 cut(s)	1157, 1431, 2100
MspI	CCGG	9 cut(s)	136, 192, 409, 421, 584, 839, 871, 1164, 2660
MspR9I	CCNGG	5 cut(s)	65, 137, 986, 1165, 1947
MunI	CAATTG	2 cut(s)	1562, 1710
Mva1269I	GAATGC	2 cut(s)	668, 1168
MvaI	CCWGG	3 cut(s)	65, 986, 1947
MvnI	CGCG	2 cut(s)	374, 440
MwoI	GCNNNNNNNGC	9 cut(s)	618, 851, 968, 977, 1330, 1376, 1406, 1962, 2023
NciI	CCSGG	2 cut(s)	137, 1165
NcoI	CCATGG	3 cut(s)	1158, 1209, 1395
NdeI	CATATG	3 cut(s)	1929, 2221, 2434
NlaIV	GGNNCC	4 cut(s)	61, 396, 1569, 1770
NmuCI	GTSAC	3 cut(s)	128, 1805, 2513
NsiI	ATGCAT	2 cut(s)	2019, 2479
NspI	RCATGY	1 cut(s)	697
NspV	TTCGAA	2 cut(s)	674, 894
OliI	CACNNNNGTG	3 cut(s)	65, 458, 1238
PagI	TCATGA	1 cut(s)	2776
PaqCI	CACCTGC	1 cut(s)	1060
PasI	CCCWGGG	1 cut(s)	1946
PciI	ACATGT	1 cut(s)	693
PciSI	GCTCTTC	2 cut(s)	1946, 2625
PctI	GAATGC	2 cut(s)	668, 1168
PdmI	GAANNNNTTC	2 cut(s)	404, 2041
PfeI	GAWTC	6 cut(s)	599, 887, 1621, 2204, 2315, 2699
PleI	GAGTC	7 cut(s)	222, 423, 595, 1857, 2140, 2186, 2218
PpsI	GAGTC	7 cut(s)	222, 423, 595, 1857, 2140, 2186, 2218
Ppu21I	YACGTR	3 cut(s)	361, 1441, 2311
PscI	ACATGT	1 cut(s)	693
PshBI	ATTAAT	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	1738
Psp1406I	AACGTT	1 cut(s)	2494
Psp6I	CCWGG	3 cut(s)	63, 984, 1945
PspEI	GGTNACC	1 cut(s)	1805
PspFI	CCCAGC	2 cut(s)	572, 1258
PspGI	CCWGG	3 cut(s)	63, 984, 1945
PspN4I	GGNNCC	4 cut(s)	61, 396, 1569, 1770
PspPI	GGNCC	3 cut(s)	1413, 1768, 1887
PstNI	CAGNNNCTG	2 cut(s)	939, 2236
PsuI	RGATCY	6 cut(s)	244, 394, 1567, 2329, 2554, 2662
RsaI	GTAC	6 cut(s)	314, 359, 485, 1448, 1923, 2576
RsaNI	GTAC	6 cut(s)	313, 358, 484, 1447, 1922, 2575
RseI	CAYNNNNRTG	4 cut(s)	65, 458, 1238, 2251
SacI	GAGCTC	1 cut(s)	1738
SapI	GCTCTTC	2 cut(s)	1946, 2625
SaqAI	TTAA	4 cut(s)	78, 2367, 2412, 2807
Sau96I	GGNCC	3 cut(s)	1413, 1768, 1887
SchI	GAGTC	7 cut(s)	223, 424, 596, 1858, 2141, 2186, 2219
ScrFI	CCNGG	5 cut(s)	65, 137, 986, 1165, 1947
SduI	GDGCHC	5 cut(s)	62, 1104, 1738, 1756, 2383
SfuI	TTCGAA	2 cut(s)	674, 894
SinI	GGWCC	2 cut(s)	1768, 1887
SmiMI	CAYNNNNRTG	4 cut(s)	65, 458, 1238, 2251
SmlI	CTYRAG	3 cut(s)	275, 1195, 1325
SmoI	CTYRAG	3 cut(s)	275, 1195, 1325
SnaBI	TACGTA	2 cut(s)	1441, 2311
SspMI	CTAG	6 cut(s)	561, 1052, 1143, 1250, 1913, 2393
SstI	GAGCTC	1 cut(s)	1738
StyD4I	CCNGG	5 cut(s)	63, 135, 984, 1163, 1945
StyI	CCWWGG	5 cut(s)	204, 555, 1158, 1209, 1395
TaaI	ACNGT	7 cut(s)	283, 405, 1240, 1992, 2507, 2725, 2735
TaiI	ACGT	4 cut(s)	363, 1443, 2313, 2497
TatI	WGTACW	1 cut(s)	1921
TauI	GCSGC	2 cut(s)	473, 1061
TfiI	GAWTC	6 cut(s)	599, 887, 1621, 2204, 2315, 2699
Tru1I	TTAA	4 cut(s)	78, 2367, 2412, 2807
Tru9I	TTAA	4 cut(s)	78, 2367, 2412, 2807
TscAI	CASTG	4 cut(s)	861, 1245, 1358, 2101
TseFI	GTSAC	3 cut(s)	128, 1805, 2513
Tsp45I	GTSAC	3 cut(s)	128, 1805, 2513
TspGWI	ACGGA	2 cut(s)	806, 2562
TspRI	CASTG	4 cut(s)	861, 1245, 1358, 2101
VneI	GTGCAC	1 cut(s)	1100
VpaK11BI	GGWCC	2 cut(s)	1768, 1887
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	3 cut(s)	814, 1093, 1418
XbaI	TCTAGA	1 cut(s)	1249
XceI	RCATGY	1 cut(s)	697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	2307
XmnI	GAANNNNTTC	2 cut(s)	404, 2041
XspI	CTAG	6 cut(s)	561, 1052, 1143, 1250, 1913, 2393
Zsp2I	ATGCAT	2 cut(s)	2019, 2479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.