AT3G11500

small nuclear ribonucleoprotein G

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006705
Physical Location & Seq
Reverse (-)
3620962 .. 3622637
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11500.2

Sequence Viewer

Length: 240 bp
ATGAGTCGATCAGGTCAGCCTCCAGATCTCAAGAAGTACATGGACAAGAAACTCCAAATTAAGCTTAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGGCTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAAAACTGACATTGGGATGGTGGTGATAAGAGGAAACAGCATTGTTACTGTTGAAGCTCTCGAACCAGTTGGAAGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
LSM

Protein Analysis

79

Amino Acids

8.75

Weight (kDa)

8.06

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 71 9.7e-23 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 2 cut(s) 143, 212
AluBI AGCT 2 cut(s) 64, 215
AluI AGCT 2 cut(s) 64, 215
AsuHPI GGTGA 2 cut(s) 164, 193
BccI CCATC 1 cut(s) 169
BclI TGATCA 1 cut(s) 106
BglII AGATCT 2 cut(s) 25, 233
BpmI CTGGAG 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 224
Bsp143I GATC 4 cut(s) 8, 25, 106, 233
BspHI TCATGA 1 cut(s) 114
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 4 cut(s) 8, 25, 106, 233
Bst4CI ACNGT 2 cut(s) 139, 208
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 4 cut(s) 11, 28, 109, 236
BstMBI GATC 4 cut(s) 8, 25, 106, 233
BstX2I RGATCY 2 cut(s) 25, 233
BstXI CCANNNNNNTGG 1 cut(s) 79
BstYI RGATCY 2 cut(s) 25, 233
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 135
CciI TCATGA 1 cut(s) 114
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 40, 115
CviJI RGCY 4 cut(s) 19, 64, 102, 215
CviKI_1 RGCY 4 cut(s) 19, 64, 102, 215
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 237
DpnI GATC 4 cut(s) 10, 27, 108, 235
DpnII GATC 4 cut(s) 8, 25, 106, 233
FaeI CATG 2 cut(s) 43, 118
FaiI YATR 2 cut(s) 41, 116
FatI CATG 2 cut(s) 39, 114
FbaI TGATCA 1 cut(s) 106
FokI GGATG 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 6
Hin1II CATG 2 cut(s) 43, 118
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 2 cut(s) 4, 118
HphI GGTGA 2 cut(s) 164, 193
Hpy188III TCNNGA 4 cut(s) 23, 31, 115, 218
HpyCH4III ACNGT 2 cut(s) 139, 208
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 2 cut(s) 43, 118
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 4 cut(s) 8, 25, 106, 233
LpnPI CCDG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 202
MalI GATC 4 cut(s) 10, 27, 108, 235
MboI GATC 4 cut(s) 8, 25, 106, 233
MflI RGATCY 2 cut(s) 25, 233
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 67, 208
MnlI CCTC 2 cut(s) 30, 182
MseI TTAA 2 cut(s) 60, 66
MslI CAYNNNNRTG 1 cut(s) 173
NdeII GATC 4 cut(s) 8, 25, 106, 233
NlaIII CATG 2 cut(s) 43, 118
PagI TCATGA 1 cut(s) 114
PfeI GAWTC 1 cut(s) 118
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PsuI RGATCY 2 cut(s) 25, 233
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 2 cut(s) 60, 66
Sau3AI GATC 4 cut(s) 8, 25, 106, 233
SchI GAGTC 1 cut(s) 13
SetI ASST 3 cut(s) 16, 66, 217
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 57
TaaI ACNGT 2 cut(s) 139, 208
TaqI TCGA 2 cut(s) 7, 219
TasI AATT 1 cut(s) 57
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 2 cut(s) 60, 66
Tru9I TTAA 2 cut(s) 60, 66
TscAI CASTG 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 103, 131
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.