Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006705

Physical Location & Seq

Genomic Coordinates Reverse (-)

11503911 .. 11504952

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0139900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGATAAGAGCATGCTGCAGGGGGCGGACTTGGATAGTCTTCCTGAAGAAGATAAGAAGAGAATGGCCACCATGATCGACCAGCTTCAGATTCGTGACAGTTTGAGGATGTACAATTCATTGGTGGAGAGCTGTTTCAGTGACTGCGTAGACAGCTTTACGCGCAAGGCCCTGACCAAGCAAGAGGAAACGTGTGTTAGAAGGTGTGCGGAGAAGTTCCTGAAGCATTCGATGCGTGTTGGTATGAGATTTGGAGAGCTCAACCAAGGAGCAGCTACCCAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0034719 GO:0035770 GO:0036464 GO:0043170 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045495 GO:0046483 GO:0060293 GO:0071004 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

95

Amino Acids

10.92

Weight (kDa)

5.83

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Tim10_DDP	PF02953	25 - 85	1.8e-21	Tim10/DDP family zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23930 AT3G11500 AT3G11500
fragaria_vesca	FvH4_6g19160
malus_domestica	MD12G1027400.v1.1
prunus_persica	Prupe.7G104100_v2.0.a1
pyrus_communis	pycom12g02630 pycom14g02630
rosa_chinensis	RchiOBHm_Chr3g0456431 RchiOBHm_Chr3g0474271
rosa_multiflora	Rmu_sc0000041.1_g000021 Rmu_sc0004507.1_g000019 Rmu_sc0007753.1_g000006
rosa_roxburghii	Rroxscaffold_6G00407390
rosa_rugosa	Rorug03G0110900 Rorug03G0139900 Rorug03G0343100 Rorug04G0442800 Rorug05G0558300
rosa_samantha	Rh1AG194800 Rh2BG255200 Rh7BG169600
rosa_wichuraiana	Rw3G017380 Rw3G018710 Rw5G014960 Rw7G015750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	163
AciI	CCGC	2 cut(s)	26, 209
AcoI	YGGCCR	1 cut(s)	66
AcuI	CTGAAG	3 cut(s)	66, 71, 242
AfaI	GTAC	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	5 cut(s)	85, 132, 156, 259, 275
AluI	AGCT	5 cut(s)	85, 132, 156, 259, 275
Alw21I	GWGCWC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	144
AoxI	GGCC	2 cut(s)	66, 168
ApeKI	GCWGC	2 cut(s)	16, 272
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	3, 284
BciT130I	CCWGG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	17, 273
BlsI	GCNGC	2 cut(s)	18, 274
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	265, 279
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	265, 279
BseGI	GGATG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	3, 284
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	68, 170
BsiHKAI	GWGCWC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	68, 170
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	2 cut(s)	26, 209
BspANI	GGCC	2 cut(s)	68, 170
BspFNI	CGCG	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	265, 279
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 162, 232
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	17
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	3, 284
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	68, 170
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	14
CaiI	CAGNNNCTG	1 cut(s)	144
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	13, 73
CviJI	RGCY	7 cut(s)	68, 85, 132, 156, 170, 259, 275
CviKI_1	RGCY	7 cut(s)	68, 85, 132, 156, 170, 259, 275
CviQI	GTAC	1 cut(s)	112
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	3 cut(s)	66, 71, 242
EcoICRI	GAGCTC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	2 cut(s)	16, 76
FaiI	YATR	3 cut(s)	14, 74, 245
FatI	CATG	2 cut(s)	12, 72
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	17, 273
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	17, 273
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	2 cut(s)	17, 273
HaeIII	GGCC	2 cut(s)	68, 170
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	16, 76
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	3 cut(s)	44, 95, 220
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 162, 232
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	16, 76
HspAI	GCGC	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	6 cut(s)	5, 57, 95, 185, 233, 266
Lsp1109I	GCAGC	2 cut(s)	3, 284
LweI	GCATC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	95, 140
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	32, 59, 62, 70
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	1 cut(s)	115
MluNI	TGGCCA	1 cut(s)	68
MnlI	CCTC	2 cut(s)	99, 178
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	153, 162, 232
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	16, 76
NmuCI	GTSAC	2 cut(s)	95, 140
NspI	RCATGY	1 cut(s)	16
PaeI	GCATGC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	18, 274
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	2 cut(s)	17, 273
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	7 cut(s)	87, 134, 158, 194, 206, 261, 277
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	17
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	26, 209
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	78, 230
TasI	AATT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	2 cut(s)	95, 140
TseI	GCWGC	2 cut(s)	16, 272
Tsp45I	GTSAC	2 cut(s)	95, 140
TspDTI	ATGAA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	145
XceI	RCATGY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.