AT2G24040

UPF0057 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007615
Physical Location & Seq
Forward (+)
10223857 .. 10225171
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24040.2

Sequence Viewer

Length: 228 bp
ATGGCGAGTAGTTGCGAGCTTTGCTGCGAGATCTTCATCGCAATTCTTCTTCCTCCTGTCGGAGTTTGTCTCAGGCATGGCTGTTGCACTGTTGAGTTCTTCATTTGTTTGATACTGACTTGCTTAGGCTACTTACCAGGAATAATATACGCAATTTACGCAATTTGTTTCTTGCACCGCGATGAGTATTTTGATGAATACAGACGCCCAATCTACTATGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

75

Amino Acids

8.63

Weight (kDa)

5.05

Isoelectric Point (pI)

66.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 8 - 30 3.1e-06 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 59
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 74
BglII AGATCT 1 cut(s) 30
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu10I CCTNAGC 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 1 cut(s) 180
BssMI GATC 1 cut(s) 30
BssNI GRCGYC 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 71, 124
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 21, 158
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BtgZI GCGATG 2 cut(s) 22, 195
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 17
CseI GACGC 1 cut(s) 213
CviAII CATG 1 cut(s) 77
CviJI RGCY 3 cut(s) 19, 81, 129
CviKI_1 RGCY 3 cut(s) 19, 81, 129
DdeI CTNAG 2 cut(s) 71, 124
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 80
FaiI YATR 3 cut(s) 78, 148, 219
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 25
HgaI GACGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 87, 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 158
HpyF3I CTNAG 2 cut(s) 71, 124
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 1 cut(s) 80
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 58, 69, 123, 150
Lsp1109I GCAGC 1 cut(s) 11
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 4 cut(s) 25, 38, 41, 91
MflI RGATCY 1 cut(s) 30
MluCI AATT 3 cut(s) 42, 153, 162
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 21, 158
NdeII GATC 1 cut(s) 30
NlaIII CATG 1 cut(s) 80
PkrI GCNGC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 180
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 138
SetI ASST 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 3 cut(s) 42, 153, 162
SsiI CCGC 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 91
TasI AATT 3 cut(s) 42, 153, 162
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 24
TspDTI ATGAA 3 cut(s) 25, 91, 210
TspRI CASTG 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.