Rw4G011040

UPF0057 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007615
Physical Location & Seq
Reverse (-)
26178775 .. 26180315
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011040.1

Sequence Viewer

Length: 189 bp
ATGATTGAATGCCTAATTGTTTTAACTGTTTATGAGTTTTTATTTTATTTTTTAACTACTTATGGTGTTTTTCTGATATGCTTGTTGTTGACTTGTCTAGGTTACCTTCCGGGAATCATCTACCCACTCTACATCATCGTGTTTGCTAATCAAGATGAGTACTTTGATGAAAGCCGCCGTCCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

62

Amino Acids

7.36

Weight (kDa)

4.08

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 21 - 47 6.2e-06 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 175
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 111
BceAI ACGGC 1 cut(s) 162
BcnI CCSGG 1 cut(s) 111
BfaI CTAG 1 cut(s) 98
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 14
BspACI CCGC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 28
BstEII GGTNACC 1 cut(s) 101
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 109
Csp6I GTAC 1 cut(s) 160
CviJI RGCY 1 cut(s) 174
CviKI_1 RGCY 1 cut(s) 174
CviQI GTAC 1 cut(s) 160
Eco91I GGTNACC 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 101
FaiI YATR 3 cut(s) 33, 63, 79
FaqI GGGAC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 1 cut(s) 98
FspEI CC 9 cut(s) 26, 48, 84, 95, 96, 119, 123, 137, 138
GluI GCNGC 1 cut(s) 175
HapII CCGG 1 cut(s) 110
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 28
LpnPI CCDG 1 cut(s) 123
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 101
MluCI AATT 1 cut(s) 15
MseI TTAA 2 cut(s) 23, 53
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 111
PctI GAATGC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 1 cut(s) 176
PspEI GGTNACC 1 cut(s) 101
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 2 cut(s) 23, 53
SatI GCNGC 1 cut(s) 175
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 111
SetI ASST 2 cut(s) 103, 108
SgeI CNNG 7 cut(s) 94, 105, 110, 122, 123, 151, 164
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 1 cut(s) 15
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 28
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 159
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 23, 53
Tru9I TTAA 2 cut(s) 23, 53
TspDTI ATGAA 1 cut(s) 183
XspI CTAG 1 cut(s) 98
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.