AT4G30660

low temperature and salt responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007615
Physical Location & Seq
Forward (+)
14955373 .. 14956171
799 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30660.1

Sequence Viewer

Length: 225 bp
ATGCCGAGCAACTGTGAGATTCTGTGCGAGATCATTATCGCGATCCTTCTTCCTCCTCTCGGAGTTTGCTTCAGGAAAGGATGCTGCACTGTGGAGTTTTTGATATGCCTGGTGTTGACGATCTTAGGCTATGTCCCGGGGATAATATATGCGATTTACGTGATTGTGTTTCAGCACCGTGAAGAGTACTTTGATGAATACAGACGCCCCATCTACTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

74

Amino Acids

8.52

Weight (kDa)

5.13

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 9 - 56 4.1e-20 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AclWI GGATC 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 59
AjnI CCWGG 1 cut(s) 108
AlwI GGATC 1 cut(s) 37
Ama87I CYCGRG 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 84
AsuC2I CCSGG 2 cut(s) 137, 138
AvaI CYCGRG 1 cut(s) 136
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 110
BcnI CCSGG 2 cut(s) 137, 138
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 110, 137, 138
BmeT110I CYCGRG 1 cut(s) 136
BmrFI CCNGG 3 cut(s) 110, 137, 138
BmsI GCATC 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 137, 138
BsaAI YACGTR 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 136, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 136, 137
BseGI GGATG 1 cut(s) 86
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 136
Bsp143I GATC 3 cut(s) 30, 42, 120
Bsp68I TCGCGA 1 cut(s) 41
BspFNI CGCG 1 cut(s) 41
BspPI GGATC 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 136, 137
BssMI GATC 3 cut(s) 30, 42, 120
BssNI GRCGYC 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 14, 91, 179
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 3 cut(s) 33, 45, 123
BstMBI GATC 3 cut(s) 30, 42, 120
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 3 cut(s) 108, 135, 136
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 87
BtuMI TCGCGA 1 cut(s) 41
Cfr9I CCCGGG 1 cut(s) 136
CseI GACGC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 187
CviJI RGCY 1 cut(s) 129
CviKI_1 RGCY 1 cut(s) 129
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 124
DpnI GATC 3 cut(s) 32, 44, 122
DpnII GATC 3 cut(s) 30, 42, 120
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 108
FaiI YATR 4 cut(s) 106, 132, 148, 150
FaqI GGGAC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 213
Hin1I GRCGYC 1 cut(s) 205
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 40, 73
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 3 cut(s) 14, 91, 179
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 30, 42, 120
LpnPI CCDG 4 cut(s) 58, 95, 122, 150
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 71
MaeII ACGT 1 cut(s) 159
MalI GATC 3 cut(s) 32, 44, 122
MboI GATC 3 cut(s) 30, 42, 120
MboII GAAGA 2 cut(s) 41, 194
MnlI CCTC 2 cut(s) 63, 66
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 3 cut(s) 110, 137, 138
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 41
NciI CCSGG 2 cut(s) 137, 138
NdeII GATC 3 cut(s) 30, 42, 120
NmeAIII GCCGAG 1 cut(s) 30
NruI TCGCGA 1 cut(s) 41
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
RruI TCGCGA 1 cut(s) 41
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 3 cut(s) 30, 42, 120
ScaI AGTACT 1 cut(s) 188
ScrFI CCNGG 3 cut(s) 110, 137, 138
SetI ASST 1 cut(s) 162
SfaNI GCATC 1 cut(s) 71
SmaI CCCGGG 1 cut(s) 138
StyD4I CCNGG 3 cut(s) 108, 135, 136
TaaI ACNGT 3 cut(s) 14, 91, 179
TaiI ACGT 1 cut(s) 162
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 19
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 210
TspMI CCCGGG 1 cut(s) 136
TspRI CASTG 1 cut(s) 94
XmaI CCCGGG 1 cut(s) 136
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.