RLG00000014678

UPF0057 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007615
Physical Location & Seq
Reverse (-)
56167605 .. 56168648
1044 bp
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UTR
Exon/CDS
Intron
RLM00000014678

Sequence Viewer

Length: 429 bp
ATGCAGAAGCTAGGGTTTCCGAGCATGAGGAGCTTGGATCAGTTCAAGTCCCTCTCCAAATCGGTCTCAGGAGGACCTCCAAAAGACCTTCGCCTACTCTTCACGTCCGCTGGAGTCAACCTTGTTGGGATGCTTGGCAAATTTGAAGCTCACCGCAGGATACAAGAGTATGTTGAAGCTGCAAGCTCCTGTCAATTCTGGAGGTGTGAGATCTGCTGCGAGATTGTGCTCGCCGTCTTGCTCCCTCCCTTGGGGGTTTGCCTCAGCCACGGTTGCTGCACCCTTGAGTTTCTGATATGCTTGTTGTTGACTTGTCTGGGTTACCTTCCGGGAATCATCTACGCGCTCTACATCATCGTGTTTGCTAATCGCGATGACTACTTTGACGAACACCGCCGTCCCCTCTACGCTCCTGCTTATTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

143

Amino Acids

15.86

Weight (kDa)

7.52

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 72 - 120 1.6e-17 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 344, 372
AciI CCGC 3 cut(s) 108, 154, 394
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 250, 251
AgsI TTSAA 3 cut(s) 46, 146, 176
AjiI CACGTC 1 cut(s) 105
AluBI AGCT 5 cut(s) 10, 33, 149, 179, 186
AluI AGCT 5 cut(s) 10, 33, 149, 179, 186
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 45
ApeKI GCWGC 3 cut(s) 179, 216, 276
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 74
BaeI ACNNNNGTAYC 2 cut(s) 152, 185
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 166, 203, 263
BceAI ACGGC 2 cut(s) 218, 381
BciVI GTATCC 1 cut(s) 153
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 153
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 180, 217, 277
BlsI GCNGC 3 cut(s) 181, 218, 278
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 120
BpmI CTGGAG 2 cut(s) 132, 220
Bpu10I CCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 249, 268
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 251
BseDI CCNNGG 2 cut(s) 249, 268
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 250, 251
BseMII CTCAG 2 cut(s) 81, 277
BseRI GAGGAG 1 cut(s) 43
BseXI GCAGC 3 cut(s) 166, 203, 263
BsgI GTGCAG 1 cut(s) 262
Bsh1236I CGCG 2 cut(s) 344, 372
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 2 cut(s) 34, 384
BslI CCNNNNNNNGG 2 cut(s) 250, 251
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 2 cut(s) 34, 384
Bso31I GGTCTC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 37, 210
Bsp68I TCGCGA 1 cut(s) 372
BspACI CCGC 3 cut(s) 108, 154, 394
BspCNI CTCAG 2 cut(s) 80, 276
BspFNI CGCG 2 cut(s) 344, 372
BspPI GGATC 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 249, 268
BssMI GATC 2 cut(s) 37, 210
BssT1I CCWWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 184, 231
BstDEI CTNAG 2 cut(s) 67, 263
BstDSI CCRYGG 1 cut(s) 268
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 2 cut(s) 344, 372
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 2 cut(s) 40, 213
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 37, 210
BstMWI GCNNNNNNNGC 2 cut(s) 30, 273
BstPI GGTNACC 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 328
BstUI CGCG 2 cut(s) 344, 372
BstV1I GCAGC 3 cut(s) 166, 203, 263
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuI GTATCC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 135
BtuMI TCGCGA 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 184, 231
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 74
CviAII CATG 1 cut(s) 25
CviJI RGCY 6 cut(s) 10, 33, 149, 179, 186, 267
CviKI_1 RGCY 6 cut(s) 10, 33, 149, 179, 186, 267
DdeI CTNAG 2 cut(s) 67, 263
DpnI GATC 2 cut(s) 39, 212
DpnII GATC 2 cut(s) 37, 210
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 74
Eco91I GGTNACC 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 171, 298
FaqI GGGAC 2 cut(s) 34, 384
FatI CATG 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 180, 217, 277
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 3 cut(s) 180, 217, 277
FspBI CTAG 1 cut(s) 11
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 180, 217, 277
GsuI CTGGAG 2 cut(s) 132, 220
HapII CCGG 1 cut(s) 329
HhaI GCGC 1 cut(s) 346
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 2 cut(s) 118, 309
HindII GTYRAC 2 cut(s) 118, 309
HinfI GANTC 2 cut(s) 114, 333
HpaII CCGG 1 cut(s) 329
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 118, 309
Hpy188I TCNGA 2 cut(s) 21, 294
Hpy188III TCNNGA 3 cut(s) 69, 199, 371
Hpy8I GTNNAC 2 cut(s) 118, 309
HpyAV CCTTC 2 cut(s) 98, 335
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 4, 182, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 273
HpyF3I CTNAG 2 cut(s) 67, 263
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 2 cut(s) 37, 210
LmnI GCTCC 4 cut(s) 30, 191, 246, 415
LpnPI CCDG 8 cut(s) 54, 96, 142, 184, 202, 302, 342, 408
Lsp1109I GCAGC 3 cut(s) 166, 203, 263
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 39, 212
MboI GATC 2 cut(s) 37, 210
MboII GAAGA 1 cut(s) 91
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 2 cut(s) 140, 194
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 8 cut(s) 21, 62, 65, 87, 195, 255, 272, 413
MseI TTAA 1 cut(s) 427
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 330
MvnI CGCG 2 cut(s) 344, 372
MwoI GCNNNNNNNGC 2 cut(s) 30, 273
NciI CCSGG 1 cut(s) 330
NdeII GATC 2 cut(s) 37, 210
NlaIII CATG 1 cut(s) 28
NruI TCGCGA 1 cut(s) 372
PfeI GAWTC 1 cut(s) 333
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 3 cut(s) 181, 218, 278
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
PspEI GGTNACC 1 cut(s) 320
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PsuI RGATCY 1 cut(s) 210
RruI TCGCGA 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 3 cut(s) 180, 217, 277
Sau3AI GATC 2 cut(s) 37, 210
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 140, 194
SsiI CCGC 3 cut(s) 108, 154, 394
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 107
TaqII GACCGA 1 cut(s) 52
TasI AATT 2 cut(s) 140, 194
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TseI GCWGC 3 cut(s) 179, 216, 276
VpaK11BI GGWCC 1 cut(s) 74
XapI RAATTY 1 cut(s) 140
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.