RchiOBHm_Chr7g0198421

UPF0057 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007615
Physical Location & Seq
Reverse (-)
16312223 .. 16319769
7547 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17753

Sequence Viewer

Length: 192 bp
ATGCCGAGCGGGTGTGAGATCTGCTGCGAGATTGTGCTCGCCGTCTTGCTCCCTCCCTTGGGGGTTTGCCCCAGCCACGGTTGCTGCACCGTTGAGTTTCTGATATGCTTGTTGTTGACTTGTCTGGGTTACCTTCCGGGAATCATCTCGCGCTCTACATCATCGTGTTTGCTAATCGCGATGCTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

63

Amino Acids

6.6

Weight (kDa)

4.75

Isoelectric Point (pI)

68.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 8 - 49 2.4e-13 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 9
AccII CGCG 2 cut(s) 151, 179
AciI CCGC 1 cut(s) 9
AfiI CCNNNNNNNGG 3 cut(s) 58, 59, 77
Alw21I GWGCWC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 24, 84
AspLEI GCGC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 11, 71
BceAI ACGGC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 138
BglII AGATCT 1 cut(s) 18
BisI GCNGC 2 cut(s) 25, 85
BlsI GCNGC 2 cut(s) 26, 86
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 57, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 59, 77
BseDI CCNNGG 2 cut(s) 57, 76
BseLI CCNNNNNNNGG 3 cut(s) 58, 59, 77
BseXI GCAGC 2 cut(s) 11, 71
BseYI CCCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 151, 179
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 58, 59, 77
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 18
Bsp68I TCGCGA 1 cut(s) 179
BspACI CCGC 1 cut(s) 9
BspFNI CGCG 2 cut(s) 151, 179
BsrBI CCGCTC 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 57, 76
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 80, 91
BstC8I GCNNGC 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 76
BstEII GGTNACC 1 cut(s) 128
BstFNI CGCG 2 cut(s) 151, 179
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 2 cut(s) 151, 179
BstV1I GCAGC 2 cut(s) 11, 71
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 76
BtuMI TCGCGA 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 153
CviJI RGCY 1 cut(s) 75
CviKI_1 RGCY 1 cut(s) 75
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaiI YATR 1 cut(s) 106
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 2 cut(s) 25, 85
Fsp4HI GCNGC 2 cut(s) 25, 85
GlaI GCGC 1 cut(s) 152
GluI GCNGC 2 cut(s) 25, 85
GsaI CCCAGC 1 cut(s) 75
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 80, 91
HpyCH4V TGCA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 3 cut(s) 85, 110, 150
Lsp1109I GCAGC 2 cut(s) 11, 71
LweI GCATC 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 20
MbiI CCGCTC 1 cut(s) 9
MboI GATC 1 cut(s) 18
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 39
MnlI CCTC 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 163
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 138
MvnI CGCG 2 cut(s) 151, 179
MwoI GCNNNNNNNGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 138
NdeII GATC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 30
NruI TCGCGA 1 cut(s) 179
PfeI GAWTC 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 2 cut(s) 26, 86
PspEI GGTNACC 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 18
RruI TCGCGA 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 163
SatI GCNGC 2 cut(s) 25, 85
Sau3AI GATC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 39
SetI ASST 1 cut(s) 135
SfaNI GCATC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 163
SsiI CCGC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 80, 91
TfiI GAWTC 1 cut(s) 141
TseI GCWGC 2 cut(s) 24, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.