MD15G1151300.v1.1

UPF0057 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0007615
Physical Location & Seq
Reverse (-)
11139536 .. 11140764
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1151300.v1.1.491

Sequence Viewer

Length: 231 bp
ATGCCGAGTGGCTGTGAGATCTGCTGTGAGATTCTGATCGCAATTCTGCTCCCTCCGCTGGGCGTTTGTCTCCGGCACGGCTGCTGCACCGTGGAGTTTTGCATATGCTTGCTGCTGACGCTGCTGGGTTACCTTCCGGGAATTATCTACGCCCTCTACGCCATCGTCTTCATTAATCGCGACGAGTACTTCGATGAGTACCGCCGCCCCCTCTACGCCTCCTCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

77

Amino Acids

8.57

Weight (kDa)

4.63

Isoelectric Point (pI)

66.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 8 - 56 3e-19 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AciI CCGC 3 cut(s) 56, 202, 205
AfaI GTAC 2 cut(s) 188, 200
AfiI CCNNNNNNNGG 2 cut(s) 58, 59
Alw26I GTCTC 1 cut(s) 74
ApeKI GCWGC 4 cut(s) 81, 84, 112, 121
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AseI ATTAAT 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 160
BbvI GCAGC 4 cut(s) 68, 71, 99, 108
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 74
BglII AGATCT 1 cut(s) 18
BisI GCNGC 5 cut(s) 82, 85, 113, 122, 205
BlsI GCNGC 5 cut(s) 83, 86, 114, 123, 206
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 59
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 2 cut(s) 58, 59
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 4 cut(s) 68, 71, 99, 108
BseYI CCCAGC 2 cut(s) 58, 124
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 180
BsiSI CCGG 2 cut(s) 73, 137
BslI CCNNNNNNNGG 2 cut(s) 58, 59
BsmAI GTCTC 1 cut(s) 74
Bsp143I GATC 2 cut(s) 18, 36
Bsp68I TCGCGA 1 cut(s) 180
BspACI CCGC 3 cut(s) 56, 202, 205
BspFNI CGCG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 18, 36
Bst4CI ACNGT 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 128
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 2 cut(s) 21, 39
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 18, 36
BstMWI GCNNNNNNNGC 4 cut(s) 55, 118, 121, 158
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 68, 71, 99, 108
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 90
BtuMI TCGCGA 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 110
CseI GACGC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 187, 199
CviJI RGCY 2 cut(s) 12, 81
CviKI_1 RGCY 2 cut(s) 12, 81
CviQI GTAC 2 cut(s) 187, 199
DpnI GATC 2 cut(s) 20, 38
DpnII GATC 2 cut(s) 18, 36
Eco91I GGTNACC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 128
FaiI YATR 2 cut(s) 104, 106
FauNDI CATATG 1 cut(s) 104
Fnu4HI GCNGC 5 cut(s) 82, 85, 113, 122, 205
Fsp4HI GCNGC 5 cut(s) 82, 85, 113, 122, 205
GluI GCNGC 5 cut(s) 82, 85, 113, 122, 205
GsaI CCCAGC 2 cut(s) 62, 128
HapII CCGG 2 cut(s) 73, 137
HgaI GACGC 1 cut(s) 127
HinfI GANTC 1 cut(s) 31
HpaII CCGG 2 cut(s) 73, 137
Hpy188I TCNGA 2 cut(s) 36, 226
Hpy188III TCNNGA 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 87, 102
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 118, 121, 158
Kzo9I GATC 2 cut(s) 18, 36
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 44, 86, 110, 150
Lsp1109I GCAGC 4 cut(s) 68, 71, 99, 108
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 20, 38
MboI GATC 2 cut(s) 18, 36
MboII GAAGA 1 cut(s) 160
MflI RGATCY 1 cut(s) 18
MluCI AATT 2 cut(s) 42, 141
MnlI CCTC 4 cut(s) 63, 164, 221, 229
MseI TTAA 2 cut(s) 174, 229
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 2 cut(s) 73, 137
MspR9I CCNGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 4 cut(s) 55, 118, 121, 158
NciI CCSGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 104
NdeII GATC 2 cut(s) 18, 36
NmeAIII GCCGAG 1 cut(s) 30
NruI TCGCGA 1 cut(s) 180
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 222
PfeI GAWTC 1 cut(s) 31
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 5 cut(s) 83, 86, 114, 123, 206
PshBI ATTAAT 1 cut(s) 174
PspEI GGTNACC 1 cut(s) 128
PspFI CCCAGC 2 cut(s) 58, 124
PsuI RGATCY 1 cut(s) 18
RruI TCGCGA 1 cut(s) 180
RsaI GTAC 2 cut(s) 188, 200
RsaNI GTAC 2 cut(s) 187, 199
SaqAI TTAA 2 cut(s) 174, 229
SatI GCNGC 5 cut(s) 82, 85, 113, 122, 205
Sau3AI GATC 2 cut(s) 18, 36
ScaI AGTACT 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 138
SetI ASST 1 cut(s) 135
Sse9I AATT 2 cut(s) 42, 141
SsiI CCGC 3 cut(s) 56, 202, 205
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 192
TasI AATT 2 cut(s) 42, 141
TatI WGTACW 1 cut(s) 186
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 174, 229
Tru9I TTAA 2 cut(s) 174, 229
TseI GCWGC 4 cut(s) 81, 84, 112, 121
TspDTI ATGAA 1 cut(s) 160
VspI ATTAAT 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.