FvH4_1g00770

UPF0057 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007615
Physical Location & Seq
Reverse (-)
389196 .. 390331
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00770.t1

Sequence Viewer

Length: 243 bp
ATGCCGAGCCGATGTGCGATCTGCTGCGAGATTTTGATCGCCATCCTGCTACCGCCGTTGGGGGTTTGCCTCAGACACGGCTGCTGCACCGTTGAGTTTCTGATATGCTTGTTGTTGACTTGTCTGGGTTACATTCCGGGAATCATCTACGCGCTCTACGCAATCGTGTTCGTTGATCGTGATGAGTACTTTGACGAATACCGCCGTCCCCTCTATGCTCCTGCACCTCCTGCTTATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

81

Amino Acids

9.02

Weight (kDa)

5.05

Isoelectric Point (pI)

70.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 8 - 56 3.4e-19 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AccII CGCG 1 cut(s) 152
AciI CCGC 2 cut(s) 53, 202
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 59
ApeKI GCWGC 3 cut(s) 24, 81, 84
AspLEI GCGC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 138
BbvI GCAGC 3 cut(s) 11, 68, 71
BccI CCATC 1 cut(s) 50
BceAI ACGGC 3 cut(s) 40, 94, 189
BcnI CCSGG 1 cut(s) 138
BisI GCNGC 3 cut(s) 25, 82, 85
BlsI GCNGC 3 cut(s) 26, 83, 86
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 138
BsaBI GATNNNNATC 2 cut(s) 35, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse8I GATNNNNATC 2 cut(s) 35, 41
BseGI GGATG 1 cut(s) 42
BseJI GATNNNNATC 2 cut(s) 35, 41
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 85
BseXI GCAGC 3 cut(s) 11, 68, 71
BsgI GTGCAG 2 cut(s) 70, 207
Bsh1236I CGCG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 18, 36, 175
BspACI CCGC 2 cut(s) 53, 202
BspCNI CTCAG 1 cut(s) 84
BspFNI CGCG 1 cut(s) 152
BssMI GATC 3 cut(s) 18, 36, 175
Bst4CI ACNGT 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 3 cut(s) 21, 39, 178
BstMBI GATC 3 cut(s) 18, 36, 175
BstMWI GCNNNNNNNGC 2 cut(s) 158, 230
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 3 cut(s) 11, 68, 71
BtsCI GGATG 1 cut(s) 42
CfoI GCGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 187
CviJI RGCY 2 cut(s) 9, 81
CviKI_1 RGCY 2 cut(s) 9, 81
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 71
DpnI GATC 3 cut(s) 20, 38, 177
DpnII GATC 3 cut(s) 18, 36, 175
FaiI YATR 3 cut(s) 106, 216, 237
FaqI GGGAC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 25, 82, 85
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 25, 82, 85
GlaI GCGC 1 cut(s) 153
GluI GCNGC 3 cut(s) 25, 82, 85
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 154
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 74, 102
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 87, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 230
HpyF3I CTNAG 1 cut(s) 71
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 3 cut(s) 18, 36, 175
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 4 cut(s) 59, 110, 150, 234
Lsp1109I GCAGC 3 cut(s) 11, 68, 71
MaeIII GTNAC 1 cut(s) 128
MalI GATC 3 cut(s) 20, 38, 177
MboI GATC 3 cut(s) 18, 36, 175
MluCI AATT 1 cut(s) 238
MnlI CCTC 3 cut(s) 80, 221, 237
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 158, 230
NciI CCSGG 1 cut(s) 138
NdeII GATC 3 cut(s) 18, 36, 175
NmeAIII GCCGAG 1 cut(s) 30
PfeI GAWTC 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 3 cut(s) 26, 83, 86
PsiI TTATAA 1 cut(s) 237
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 3 cut(s) 25, 82, 85
Sau3AI GATC 3 cut(s) 18, 36, 175
ScaI AGTACT 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 138
SetI ASST 1 cut(s) 229
Sse9I AATT 1 cut(s) 238
SsiI CCGC 2 cut(s) 53, 202
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 91
TasI AATT 1 cut(s) 238
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 141
TseI GCWGC 3 cut(s) 24, 81, 84
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.