MD15G1151000.v1.1

UPF0057 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0007615
Physical Location & Seq
Reverse (-)
11135164 .. 11137794
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1151000.v1.1.491

Sequence Viewer

Length: 219 bp
ATGCCGAGTTGCTGTGAGATCTGTTGTGAGATTATGATCGCAATTCTGCTCCCTCCGCTAGGCGTTTGTATCCGGCACGGCTGCTGCACCGTAGAGTTTTGCATATGCTTGTTATTGACGATGATGGGCTACATTCCGGGAATCATCTACGCCCTCTACGCAATCATTTTCATCAATCCCGACGAGAGCTTCCATGATTACCGCCGGCGCCGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

73

Amino Acids

8.25

Weight (kDa)

6.01

Isoelectric Point (pI)

71.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 8 - 55 2.3e-18 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 207
AciI CCGC 3 cut(s) 56, 202, 211
AcyI GRCGYC 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 59
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 81, 84
AspLEI GCGC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 138
BanI GGYRCC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 68, 71
BccI CCATC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 94
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 211
BfuI GTATCC 1 cut(s) 80
BglII AGATCT 1 cut(s) 18
BisI GCNGC 3 cut(s) 82, 85, 211
BlsI GCNGC 3 cut(s) 83, 86, 212
Bme1390I CCNGG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 68, 71
BsgI GTGCAG 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 207
BsiSI CCGG 3 cut(s) 73, 137, 205
BslI CCNNNNNNNGG 1 cut(s) 59
Bsp143I GATC 2 cut(s) 18, 36
BspACI CCGC 3 cut(s) 56, 202, 211
BspLI GGNNCC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 204
BssMI GATC 2 cut(s) 18, 36
BssNI GRCGYC 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 2 cut(s) 21, 39
BstMBI GATC 2 cut(s) 18, 36
BstMWI GCNNNNNNNGC 3 cut(s) 55, 158, 210
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 2 cut(s) 68, 71
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuI GTATCC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 204
CviAII CATG 1 cut(s) 194
CviJI RGCY 3 cut(s) 81, 129, 189
CviKI_1 RGCY 3 cut(s) 81, 129, 189
DinI GGCGCC 1 cut(s) 209
DpnI GATC 2 cut(s) 20, 38
DpnII GATC 2 cut(s) 18, 36
EcoNI CCTNNNNNAGG 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 209
EheI GGCGCC 1 cut(s) 209
FaeI CATG 1 cut(s) 197
FaiI YATR 4 cut(s) 35, 104, 106, 195
FatI CATG 1 cut(s) 193
FauNDI CATATG 1 cut(s) 104
Fnu4HI GCNGC 3 cut(s) 82, 85, 211
Fsp4HI GCNGC 3 cut(s) 82, 85, 211
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 209
GluI GCNGC 3 cut(s) 82, 85, 211
HaeII RGCGCY 1 cut(s) 211
HapII CCGG 3 cut(s) 73, 137, 205
HhaI GCGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 1 cut(s) 141
HpaII CCGG 3 cut(s) 73, 137, 205
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 87, 102
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 158, 210
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 1 cut(s) 208
KasI GGCGCC 1 cut(s) 207
KroI GCCGGC 1 cut(s) 204
KroNI GCCGGC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 18, 36
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 2 cut(s) 86, 150
Lsp1109I GCAGC 2 cut(s) 68, 71
MaeI CTAG 1 cut(s) 59
MalI GATC 2 cut(s) 20, 38
MboI GATC 2 cut(s) 18, 36
MflI RGATCY 1 cut(s) 18
MluCI AATT 1 cut(s) 42
Mly113I GGCGCC 1 cut(s) 208
MnlI CCTC 2 cut(s) 63, 164
MreI CGCCGGCG 1 cut(s) 204
MroNI GCCGGC 1 cut(s) 204
MspI CCGG 3 cut(s) 73, 137, 205
MspR9I CCNGG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 55, 158, 210
NaeI GCCGGC 1 cut(s) 206
NarI GGCGCC 1 cut(s) 208
NciI CCSGG 1 cut(s) 138
NdeI CATATG 1 cut(s) 104
NdeII GATC 2 cut(s) 18, 36
NgoMIV GCCGGC 1 cut(s) 204
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 209
NmeAIII GCCGAG 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 141
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 3 cut(s) 83, 86, 212
PluTI GGCGCC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 18
SatI GCNGC 3 cut(s) 82, 85, 211
Sau3AI GATC 2 cut(s) 18, 36
ScrFI CCNGG 1 cut(s) 138
SetI ASST 1 cut(s) 191
SfoI GGCGCC 1 cut(s) 209
SgrAI CRCCGGYG 1 cut(s) 204
Sse9I AATT 1 cut(s) 42
SsiI CCGC 3 cut(s) 56, 202, 211
SspDI GGCGCC 1 cut(s) 207
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 91
TasI AATT 1 cut(s) 42
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 141
TseI GCWGC 2 cut(s) 81, 84
TspDTI ATGAA 1 cut(s) 160
XagI CCTNNNNNAGG 1 cut(s) 57
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.