Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Forward (+)

10229350 .. 10231856

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G24060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTGGGATTACCAGCAGCACCGTTGGATTCAACGCCGTCTTCACCGGAATAACCAAAACAGTATCATCACATTCACTCTTCTCTGTTGATTCCAAACTCTGTAGTCTTCGTCTCTCCAAAACCGAACTGTCTTTCACTAATCTCACTCCTTCTCCTCGCCGTGCTTTCGCCGTCACTTGCCGCTTCGGCGGTGGTGGTGGAGGTTATCGATTCTCTGGAGACAATAGAAGAGGTAGGCCGAAAGAAGCTGAAATTGATGAAGCTCTTGATATCTCCTCAATTAGGTCAGCTACTGTTAGGCTTATCGATGGGCAACAAAACATGCTTGGTTTAGTGTCTAAAGACGAAGCCGTTCGAATGGCTGATGATGCTGAACTTGATCTGGTTATACTATCGCCTGATGCAGATCCTCCGGTTGTTAAAATGATGGACTACAGTAAATACAGATACGAACAGCAAAAGAGGAAAAAAGATCAGCAAAAGAAAACAACTCGCATGGATTTAAAGGAGCTTAAAATGGGTTATAATATTGATCAGCATGATTATTCCGTTCGTCTAAGGGCTGCCCAAAAGTTCTTGCAAGATGGTGACAAGGTTAAGGTGATTGTGAGCATGAAAGGACGAGAAAACGAGTTCAGAAATATCGCTATTGAACTCCTCAGACGTTTCCAAACCGAAATAGGGGAGCTTGCAACTGAAGAGAGCAAAAACTTCAGGGACAGAAATATGTTCATTATCTTGGTCCCAAACAAAGAAATGATTCGGAAACCACAAGAACCACCCACAAGAAAGAAGAAAAAAACAGCGGAAAACGAAGCTTCAGCTTCAGCTGCAGAAATAACAGCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAACCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCAGAGCCTCTACAGATCGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

312

Amino Acids

35.14

Weight (kDa)

5.77

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_N	PF05198	94 - 160	2.1e-25	Translation initiation factor IF-3, N-terminal domain
IF3_C	PF00707	168 - 251	4.7e-24	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AciI	CCGC	3 cut(s)	184, 192, 809
AclWI	GGATC	1 cut(s)	404
AcuI	CTGAAG	4 cut(s)	700, 720, 807, 813
AfiI	CCNNNNNNNGG	2 cut(s)	285, 684
AgsI	TTSAA	2 cut(s)	34, 656
AluBI	AGCT	9 cut(s)	251, 266, 293, 514, 691, 821, 827, 833, 848
AluI	AGCT	9 cut(s)	251, 266, 293, 514, 691, 821, 827, 833, 848
Alw26I	GTCTC	2 cut(s)	119, 216
AlwI	GGATC	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	18, 566, 833
Asp700I	GAANNNNTTC	2 cut(s)	354, 762
AspS9I	GGNCC	1 cut(s)	745
AsuHPI	GGTGA	3 cut(s)	37, 602, 616
AsuII	TTCGAA	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	745
BbsI	GAAGAC	2 cut(s)	34, 101
BbvI	GCAGC	3 cut(s)	30, 553, 820
BccI	CCATC	3 cut(s)	305, 424, 581
BceAI	ACGGC	4 cut(s)	23, 147, 158, 338
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	119, 216
BfmI	CTRYAG	4 cut(s)	103, 436, 834, 923
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	4 cut(s)	19, 184, 567, 834
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	4 cut(s)	20, 185, 568, 835
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	1 cut(s)	747
BmsI	GCATC	2 cut(s)	361, 394
BpiI	GAAGAC	2 cut(s)	34, 101
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	9 cut(s)	855, 861, 867, 873, 885, 891, 897, 903, 909
Bpu1102I	GCTNAGC	1 cut(s)	849
Bpu14I	TTCGAA	1 cut(s)	358
Bsa29I	ATCGAT	3 cut(s)	211, 309, 930
BsaBI	GATNNNNATC	1 cut(s)	408
BsaWI	WCCGGW	2 cut(s)	47, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 684
Bse8I	GATNNNNATC	1 cut(s)	408
BseCI	ATCGAT	3 cut(s)	211, 309, 930
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	285, 684
BseRI	GAGGAG	3 cut(s)	147, 268, 650
BseXI	GCAGC	3 cut(s)	30, 553, 820
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	241
BshVI	ATCGAT	3 cut(s)	211, 309, 930
BsiSI	CCGG	2 cut(s)	48, 416
BslFI	GGGAC	2 cut(s)	731, 734
BslI	CCNNNNNNNGG	2 cut(s)	285, 684
BsmAI	GTCTC	2 cut(s)	119, 216
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	731, 734
BsnI	GGCC	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	358
Bsp143I	GATC	5 cut(s)	382, 409, 475, 535, 927
Bsp1720I	GCTNAGC	1 cut(s)	849
BspACI	CCGC	3 cut(s)	184, 192, 809
BspANI	GGCC	1 cut(s)	241
BspDI	ATCGAT	3 cut(s)	211, 309, 930
BspLI	GGNNCC	1 cut(s)	747
BspMAI	CTGCAG	1 cut(s)	838
BspPI	GGATC	1 cut(s)	404
BspT104I	TTCGAA	1 cut(s)	358
BssMI	GATC	5 cut(s)	382, 409, 475, 535, 927
Bst4CI	ACNGT	5 cut(s)	25, 64, 132, 298, 440
Bst6I	CTCTTC	3 cut(s)	86, 226, 696
BstBI	TTCGAA	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	693
BstENI	CCTNNNNNAGG	1 cut(s)	283
BstKTI	GATC	5 cut(s)	385, 412, 478, 538, 930
BstMAI	GTCTC	2 cut(s)	119, 216
BstMBI	GATC	5 cut(s)	382, 409, 475, 535, 927
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 371, 833
BstNSI	RCATGY	1 cut(s)	328
BstSFI	CTRYAG	4 cut(s)	103, 436, 834, 923
BstV1I	GCAGC	3 cut(s)	30, 553, 820
BstV2I	GAAGAC	2 cut(s)	34, 101
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
Bsu15I	ATCGAT	3 cut(s)	211, 309, 930
BsuRI	GGCC	1 cut(s)	241
BsuTUI	ATCGAT	3 cut(s)	211, 309, 930
Cac8I	GCNNGC	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	745
ClaI	ATCGAT	3 cut(s)	211, 309, 930
CviAII	CATG	4 cut(s)	325, 499, 542, 616
DpnI	GATC	5 cut(s)	384, 411, 477, 537, 929
DpnII	GATC	5 cut(s)	382, 409, 475, 535, 927
DraI	TTTAAA	1 cut(s)	507
Eam1104I	CTCTTC	3 cut(s)	86, 226, 696
EarI	CTCTTC	3 cut(s)	86, 226, 696
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	745
Eco57I	CTGAAG	4 cut(s)	700, 720, 807, 813
EcoNI	CCTNNNNNAGG	1 cut(s)	283
EcoRV	GATATC	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	4 cut(s)	328, 502, 545, 619
FaiI	YATR	7 cut(s)	326, 392, 500, 528, 543, 617, 731
FaqI	GGGAC	2 cut(s)	731, 734
FatI	CATG	4 cut(s)	324, 498, 541, 615
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	19, 184, 567, 834
Fsp4HI	GCNGC	4 cut(s)	19, 184, 567, 834
GluI	GCNGC	4 cut(s)	19, 184, 567, 834
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	48, 416
Hin1II	CATG	4 cut(s)	328, 502, 545, 619
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	5 cut(s)	30, 92, 213, 763, 932
HpaII	CCGG	2 cut(s)	48, 416
HphI	GGTGA	3 cut(s)	37, 602, 616
Hpy188I	TCNGA	3 cut(s)	641, 665, 768
Hpy188III	TCNNGA	3 cut(s)	219, 269, 936
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	5 cut(s)	25, 64, 132, 298, 440
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	4 cut(s)	407, 583, 695, 836
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 371, 833
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	4 cut(s)	328, 502, 545, 619
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	382, 409, 475, 535, 927
LmnI	GCTCC	2 cut(s)	511, 688
Lsp1109I	GCAGC	3 cut(s)	30, 553, 820
LweI	GCATC	2 cut(s)	361, 394
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	2 cut(s)	175, 590
MalI	GATC	5 cut(s)	384, 411, 477, 537, 929
MboI	GATC	5 cut(s)	382, 409, 475, 535, 927
MboII	GAAGA	6 cut(s)	34, 73, 101, 243, 713, 808
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	2 cut(s)	255, 282
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	8 cut(s)	168, 197, 227, 289, 423, 459, 671, 930
MroXI	GAANNNNTTC	2 cut(s)	354, 762
MseI	TTAA	4 cut(s)	423, 506, 516, 600
MspA1I	CMGCKG	3 cut(s)	809, 833, 848
MspI	CCGG	2 cut(s)	48, 416
MwoI	GCNNNNNNNGC	3 cut(s)	189, 371, 833
NdeII	GATC	5 cut(s)	382, 409, 475, 535, 927
NlaIII	CATG	4 cut(s)	328, 502, 545, 619
NlaIV	GGNNCC	1 cut(s)	747
NmuCI	GTSAC	2 cut(s)	175, 590
NspI	RCATGY	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	358
PdmI	GAANNNNTTC	2 cut(s)	354, 762
PfeI	GAWTC	5 cut(s)	30, 92, 213, 763, 932
PkrI	GCNGC	4 cut(s)	20, 185, 568, 835
PsiI	TTATAA	1 cut(s)	528
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	747
PspPI	GGNCC	1 cut(s)	745
PstI	CTGCAG	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	2 cut(s)	833, 848
SaqAI	TTAA	4 cut(s)	423, 506, 516, 600
SatI	GCNGC	4 cut(s)	19, 184, 567, 834
Sau3AI	GATC	5 cut(s)	382, 409, 475, 535, 927
Sau96I	GGNCC	1 cut(s)	745
SfaNI	GCATC	2 cut(s)	361, 394
SfcI	CTRYAG	4 cut(s)	103, 436, 834, 923
SfuI	TTCGAA	1 cut(s)	358
SinI	GGWCC	1 cut(s)	745
Sse9I	AATT	2 cut(s)	255, 282
SsiI	CCGC	3 cut(s)	184, 192, 809
SspI	AATATT	1 cut(s)	532
TaaI	ACNGT	5 cut(s)	25, 64, 132, 298, 440
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	4 cut(s)	211, 309, 358, 930
TasI	AATT	2 cut(s)	255, 282
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	5 cut(s)	30, 92, 213, 763, 932
Tru1I	TTAA	4 cut(s)	423, 506, 516, 600
Tru9I	TTAA	4 cut(s)	423, 506, 516, 600
TseFI	GTSAC	2 cut(s)	175, 590
TseI	GCWGC	3 cut(s)	18, 566, 833
Tsp45I	GTSAC	2 cut(s)	175, 590
TspDTI	ATGAA	3 cut(s)	276, 632, 724
TspGWI	ACGGA	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	745
XagI	CCTNNNNNAGG	1 cut(s)	283
XceI	RCATGY	1 cut(s)	328
XmnI	GAANNNNTTC	2 cut(s)	354, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.