Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Forward (+)

21895823 .. 21899935

Gene Structure 4113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G265300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTGGGATCACCACCAGCTGCGCATCCAAAGCTATGCTATACCGAACCACATATAAAACGACGCCGTCTCCACTCTCACTCTCCTCCGTGGAGTCCAAACTCTTCGGCCTTCGTTTTAATAACTCCTCCAGCTGTTTTGGCTGTCTCTCCTCAACCGTCAGCAGCCCAATAACCGCCCGTTTCGGCGGTGGGCCGCGTTTTCCCGGCAATGATCCCAGGCGCTCACGGAAGAGCGACTCCGATGAGGACGAGGCCCTTGATGTCTCCTCTATCAGGTCAGATACCGTGAGGCTAATTGATGCGAAGCAGAACATGGTTGGAGTGGTCTCTAAAAGGGAGGCTATTCGACTGGCTGACGATGCTGATCTTGATTTGGTAATATTATCTCCAGAAGCAGATCCTCCAGTTCTCAGGATAATGGATTACAATAAATATAGGTATGAACAACAAAAGAAGAAAAGAGGCCAGCAGAAGAAAAGTGCAGCAAGCCGCATGGATTTGAAGGAGCTCAAAATGGGTTACAACATTGACCAACATGATTACTCTGTGCGTTTGAGAGCTGCCCAGAAGTTTTTGAAAGATGGTGATAAGGTCAAGGTTATTGTCCACTTGAAAGGCCGTGAAAATGATTTCCGAAATATTGCTATTGCACTTATCAAACGCTTCCAGAATGATGTTGGGGAGCTGGCAACAGAGGAAGCCAAAAGCTTCAGCGACAAGAACATGTTTATAGTTTTAGTTCCCAACAAGGCTATTCTACAGAAAGCTCAAGAACCACCGCCGAAGAAGAAAGAAAACTCTGCACCTGCAGTGAATGAAATATCAGCTGGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

280

Amino Acids

31.01

Weight (kDa)

9.53

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	817
Acc16I	TGCGCA	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	817
AccII	CGCG	1 cut(s)	199
AciI	CCGC	5 cut(s)	177, 189, 197, 493, 782
AclWI	GGATC	3 cut(s)	17, 209, 395
AcuI	CTGAAG	1 cut(s)	697
AcyI	GRCGYC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	3 cut(s)	505, 580, 616
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	9 cut(s)	21, 35, 135, 511, 563, 688, 711, 770, 830
AluI	AGCT	9 cut(s)	21, 35, 135, 511, 563, 688, 711, 770, 830
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	4 cut(s)	75, 152, 271, 334
AlwI	GGATC	3 cut(s)	17, 209, 395
AoxI	GGCC	5 cut(s)	109, 194, 255, 466, 619
ApeKI	GCWGC	4 cut(s)	21, 165, 485, 563
AspLEI	GCGC	2 cut(s)	26, 225
AspS9I	GGNCC	2 cut(s)	194, 256
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	4, 599
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	8, 177, 497, 550
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	2 cut(s)	52, 606
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	4 cut(s)	75, 152, 271, 334
BfmI	CTRYAG	2 cut(s)	761, 810
BfoI	RGCGCY	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	817
BisI	GCNGC	6 cut(s)	22, 166, 197, 486, 493, 564
BlsI	GCNGC	6 cut(s)	23, 167, 198, 487, 494, 565
Bme1390I	CCNGG	2 cut(s)	207, 220
BmgT120I	GGNCC	2 cut(s)	194, 256
BmrFI	CCNGG	2 cut(s)	207, 220
BmsI	GCATC	3 cut(s)	35, 292, 352
BpmI	CTGGAG	3 cut(s)	115, 375, 390
BpuEI	CTTGAG	1 cut(s)	756
BpuMI	CCSGG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	90, 218
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	357, 407
Bse3DI	GCAATG	1 cut(s)	217
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	90, 218
BseGI	GGATG	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	427
BseNI	ACTGG	2 cut(s)	357, 407
BseRI	GAGGAG	4 cut(s)	76, 118, 142, 259
BseXI	GCAGC	4 cut(s)	8, 177, 497, 550
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	2 cut(s)	504, 789
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	5 cut(s)	111, 196, 257, 468, 621
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	4 cut(s)	75, 152, 271, 334
BsmBI	CGTCTC	1 cut(s)	75
BsnI	GGCC	5 cut(s)	111, 196, 257, 468, 621
Bso31I	GGTCTC	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	9, 214, 367, 400
BspACI	CCGC	5 cut(s)	177, 189, 197, 493, 782
BspANI	GGCC	5 cut(s)	111, 196, 257, 468, 621
BspCNI	CTCAG	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	817
BspPI	GGATC	3 cut(s)	17, 209, 395
BspQI	GCTCTTC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	357, 407
BssECI	CCNNGG	2 cut(s)	90, 218
BssMI	GATC	4 cut(s)	9, 214, 367, 400
BssNI	GRCGYC	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	160, 289
Bst6I	CTCTTC	2 cut(s)	110, 227
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	470, 490, 690
BstDEI	CTNAG	1 cut(s)	413
BstDSI	CCRYGG	1 cut(s)	90
BstENI	CCTNNNNNAGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	199
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	26, 225
BstKTI	GATC	4 cut(s)	12, 217, 370, 403
BstMAI	GTCTC	4 cut(s)	75, 152, 271, 334
BstMBI	GATC	4 cut(s)	9, 214, 367, 400
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 141, 362
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	205, 218
BstSFI	CTRYAG	2 cut(s)	761, 810
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	4 cut(s)	8, 177, 497, 550
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	5 cut(s)	111, 196, 257, 468, 621
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	1 cut(s)	819
BveI	ACCTGC	1 cut(s)	817
Cac8I	GCNNGC	3 cut(s)	470, 490, 690
CfoI	GCGC	2 cut(s)	26, 225
Cfr13I	GGNCC	2 cut(s)	194, 256
CseI	GACGC	1 cut(s)	73
CviAII	CATG	4 cut(s)	316, 496, 539, 727
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	4 cut(s)	11, 216, 369, 402
DpnII	GATC	4 cut(s)	9, 214, 367, 400
Eam1104I	CTCTTC	2 cut(s)	110, 227
EarI	CTCTTC	2 cut(s)	110, 227
Ecl136II	GAGCTC	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	513
Eco31I	GGTCTC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	511
EcoNI	CCTNNNNNAGG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	4 cut(s)	319, 499, 542, 730
FatI	CATG	4 cut(s)	315, 495, 538, 726
Fnu4HI	GCNGC	6 cut(s)	22, 166, 197, 486, 493, 564
FokI	GGATG	1 cut(s)	13
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	6 cut(s)	22, 166, 197, 486, 493, 564
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	2 cut(s)	25, 224
GluI	GCNGC	6 cut(s)	22, 166, 197, 486, 493, 564
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	3 cut(s)	115, 375, 390
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	5 cut(s)	111, 196, 257, 468, 621
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	26, 225
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	4 cut(s)	319, 499, 542, 730
Hin6I	GCGC	2 cut(s)	24, 223
HinP1I	GCGC	2 cut(s)	24, 223
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	2 cut(s)	95, 239
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	4, 599
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	4 cut(s)	244, 283, 638, 839
Hpy188III	TCNNGA	5 cut(s)	371, 392, 415, 670, 773
Hpy8I	GTNNAC	1 cut(s)	610
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	122, 499
HpyCH4III	ACNGT	2 cut(s)	160, 289
HpyCH4V	TGCA	4 cut(s)	485, 653, 806, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 141, 362
HpyF3I	CTNAG	1 cut(s)	413
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	4 cut(s)	319, 499, 542, 730
HspAI	GCGC	2 cut(s)	24, 223
Kzo9I	GATC	4 cut(s)	9, 214, 367, 400
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	2 cut(s)	508, 685
Lsp1109I	GCAGC	4 cut(s)	8, 177, 497, 550
LweI	GCATC	3 cut(s)	35, 292, 352
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	4 cut(s)	11, 216, 369, 402
MboI	GATC	4 cut(s)	9, 214, 367, 400
MboII	GAAGA	6 cut(s)	97, 244, 469, 487, 799, 802
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	104, 233
MmeI	TCCRAC	1 cut(s)	301
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	3 cut(s)	21, 135, 830
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	207, 220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	3 cut(s)	32, 141, 362
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	4 cut(s)	9, 214, 367, 400
NlaIII	CATG	4 cut(s)	319, 499, 542, 730
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	1 cut(s)	730
PaqCI	CACCTGC	1 cut(s)	817
PciI	ACATGT	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	227
PflFI	GACNNNGTC	1 cut(s)	67
PkrI	GCNGC	6 cut(s)	23, 167, 198, 487, 494, 565
PleI	GAGTC	2 cut(s)	103, 233
PpsI	GAGTC	2 cut(s)	103, 233
PscI	ACATGT	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	194, 256
PstI	CTGCAG	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	400
PsyI	GACNNNGTC	1 cut(s)	67
PvuII	CAGCTG	3 cut(s)	21, 135, 830
SacI	GAGCTC	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	6 cut(s)	22, 166, 197, 486, 493, 564
Sau3AI	GATC	4 cut(s)	9, 214, 367, 400
Sau96I	GGNCC	2 cut(s)	194, 256
SchI	GAGTC	2 cut(s)	104, 233
ScrFI	CCNGG	2 cut(s)	207, 220
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	3 cut(s)	35, 292, 352
SfcI	CTRYAG	2 cut(s)	761, 810
SmlI	CTYRAG	1 cut(s)	771
SmoI	CTYRAG	1 cut(s)	771
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	5 cut(s)	177, 189, 197, 493, 782
SspI	AATATT	2 cut(s)	384, 643
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	205, 218
TaaI	ACNGT	2 cut(s)	160, 289
TaqI	TCGA	1 cut(s)	349
TasI	AATT	1 cut(s)	297
TauI	GCSGC	2 cut(s)	199, 495
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	819
TseI	GCWGC	4 cut(s)	21, 165, 485, 563
TspDTI	ATGAA	2 cut(s)	459, 834
TspGWI	ACGGA	2 cut(s)	79, 244
TspRI	CASTG	1 cut(s)	819
Tth111I	GACNNNGTC	1 cut(s)	67
XagI	CCTNNNNNAGG	1 cut(s)	274
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.