Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Forward (+)

55382385 .. 55386711

Gene Structure 4327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0460200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGAGGCTCAAATTTCAAGGACACAGAGCTGTGATTTAGAAGAGAATGCTAGAGAAAAAACTCAAAAACCTGATGGTACTACTCAGTCAAGTGCAAGTTCAGCATCCAAAGACTCGGTTGTAAGTAAGTTTAAAGGGCTATTGAGTTTTATGAAAACTTATTGTCGAGATTTGTCCATAGGCTTACGTTCCAAGAATAAGATTGTTGACTGCCAGCATAAATTAGTCCAGCAAAGGTGGAATAAGATACTTCCTGTTCTGTGTGTTATTGCGTTATCACTGGATCCTCTGTTTTGTTACCTCCTTGTGGTCAATGATGAGAAGAAGTGCCTTGGATTCGACAGAAGATTAGGGGCCATAGCCATTGTTTTGCGATCTGTGGTGGATTCCTTTCATCTGTTATATATCATTTATCGATTTCGTGCTAGTGTTGTTACTCTTTCCTCTCGATCATCAAGCAAACGTGAATTGGTTCCATATACTCAGACAAAAGCATGGAAATATCTGTTATTCTACTTCCTATTAGACATACTTGTGATTCTTCCACTTCCACAGGTCGTAGTTTTTTCTGTCATTCCAAAATTGAATAACTCATGGGTTTTCCATGCAACAGAGTCATTGTACTTTATACTTATCTTTCAATATGTGCTAAGGGTTCTTCGAATCTGCTCATTGTTAAAAGAAGCCACAAGTTCTTGGGGCATCCTCGCCGAAACTGCATGGGCTAAAGCTGCCTTTAATCTCTTTCTTTACATGCTTGCTAGTCATGTTGTTGGAGCCTTTTGGTACTTCTTTTCAATAGAAAGGAAAGCATCTTGCTGGCAAAAATCCTGTAAAATACATGCTAGTGCTTATTGTTCGTTATATTGCGATGATACATTTGGAGCTAGCCCTTTCCTGAATGACTCTTGCTCTCCAGAGACATCAAACTCCACATTCTTTAATTTCGGAATATACTTTGGTGCTCTTGAATCTCGCGTCATTGAATCAACAGAAGTAATACCGAAGGTTTCTTACTGCTTTTGGTGGGGACTGCAAAATCTGAGCTCCCTTGGTCAAGGCCTCAAAACAAGTACCTATGTATGGGAAATCTGCTTCTCAGTTTTTGTTTCGCTTTCTGGCTTGATACTTTTTGCATTTCTTATTGGAAATATGCAGACATATTTGCAATCAAAAACAGCAAAGTTGGAGGAAATGAGATTGAAAGGGCAAGAGATAGAGTTGTGGATGGCTTTCCATTCCCTTCCTCGGAAGATTAAGAAGAAGATTCGGCGATTCCAGAGATACCAATGGCAAGAAACTAGGGTGTTGATGTGGAGAGTTTACTGCACAATCTTCCCAAAGACATCAGAAGAGAAACAAAGCAATATCTTTGCTCCGGTCCACTCAGTAACGTTCCAATGCTTCAAAACATGGATAAACGATTGTTTGACGCAATCTGTGATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

483

Amino Acids

55.72

Weight (kDa)

9.26

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	115 - 395	1.1e-13	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	978
AclI	AACGTT	1 cut(s)	1394
AclWI	GGATC	2 cut(s)	278, 291
AcsI	RAATTY	1 cut(s)	12
AfaI	GTAC	4 cut(s)	79, 623, 788, 1075
AfiI	CCNNNNNNNGG	3 cut(s)	307, 1083, 1248
AgsI	TTSAA	8 cut(s)	18, 586, 641, 798, 971, 986, 1204, 1408
AluBI	AGCT	4 cut(s)	30, 731, 887, 1047
AluI	AGCT	4 cut(s)	30, 731, 887, 1047
Alw21I	GWGCWC	2 cut(s)	967, 1049
Alw26I	GTCTC	1 cut(s)	914
AlwI	GGATC	2 cut(s)	278, 291
AoxI	GGCC	2 cut(s)	354, 1060
ApeKI	GCWGC	1 cut(s)	731
ApoI	RAATTY	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	354, 1381
AsuII	TTCGAA	1 cut(s)	661
AsuNHI	GCTAGC	1 cut(s)	887
AvaII	GGWCC	1 cut(s)	1381
BamHI	GGATCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	1049
BarI	GAAGNNNNNNTAC	2 cut(s)	998, 1030
Bbv12I	GWGCWC	2 cut(s)	967, 1049
BbvI	GCAGC	1 cut(s)	718
BccI	CCATC	2 cut(s)	68, 1222
BclI	TGATCA	1 cut(s)	1443
BcoDI	GTCTC	1 cut(s)	914
BfaI	CTAG	6 cut(s)	51, 426, 762, 846, 888, 1302
BisI	GCNGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	733
Bme18I	GGWCC	1 cut(s)	1381
BmgT120I	GGNCC	2 cut(s)	354, 1381
BmiI	GGNNCC	4 cut(s)	285, 355, 474, 778
BmsI	GCATC	3 cut(s)	113, 711, 821
BmtI	GCTAGC	1 cut(s)	891
BpmI	CTGGAG	1 cut(s)	900
Bpu10I	CCTNAGC	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	661
Bsa29I	ATCGAT	1 cut(s)	415
BsaJI	CCNNGG	3 cut(s)	331, 1051, 1247
BsaWI	WCCGGW	1 cut(s)	1378
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 1083, 1248
Bse1I	ACTGG	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	331, 1051, 1247
BseGI	GGATG	3 cut(s)	104, 702, 1233
BseLI	CCNNNNNNNGG	3 cut(s)	307, 1083, 1248
BseMII	CTCAG	5 cut(s)	98, 497, 1034, 1113, 1401
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	718
BsgI	GTGCAG	1 cut(s)	1312
Bsh1236I	CGCG	1 cut(s)	978
BshFI	GGCC	2 cut(s)	356, 1062
BshVI	ATCGAT	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	967, 1049
BsiSI	CCGG	1 cut(s)	1379
BslFI	GGGAC	1 cut(s)	1044
BslI	CCNNNNNNNGG	3 cut(s)	307, 1083, 1248
BsmAI	GTCTC	1 cut(s)	914
BsmFI	GGGAC	1 cut(s)	1044
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	356, 1062
Bsp119I	TTCGAA	1 cut(s)	661
Bsp1286I	GDGCHC	2 cut(s)	967, 1049
Bsp143I	GATC	4 cut(s)	283, 374, 449, 1443
BspANI	GGCC	2 cut(s)	356, 1062
BspCNI	CTCAG	5 cut(s)	97, 496, 1035, 1112, 1400
BspDI	ATCGAT	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	978
BspLI	GGNNCC	4 cut(s)	285, 355, 474, 778
BspOI	GCTAGC	1 cut(s)	891
BspPI	GGATC	2 cut(s)	278, 291
BspT104I	TTCGAA	1 cut(s)	661
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	331, 1051, 1247
BssMI	GATC	4 cut(s)	283, 374, 449, 1443
BssT1I	CCWWGG	2 cut(s)	331, 1051
Bst6I	CTCTTC	2 cut(s)	36, 1347
BstBI	TTCGAA	1 cut(s)	661
BstC8I	GCNNGC	4 cut(s)	215, 759, 821, 889
BstDEI	CTNAG	6 cut(s)	84, 483, 650, 1043, 1099, 1387
BstF5I	GGATG	3 cut(s)	104, 702, 1233
BstFNI	CGCG	1 cut(s)	978
BstKTI	GATC	4 cut(s)	286, 377, 452, 1446
BstMAI	GTCTC	1 cut(s)	914
BstMBI	GATC	4 cut(s)	283, 374, 449, 1443
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 716, 731
BstNSI	RCATGY	2 cut(s)	757, 845
BstUI	CGCG	1 cut(s)	978
BstV1I	GCAGC	1 cut(s)	718
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
Bsu15I	ATCGAT	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	356, 1062
BsuTUI	ATCGAT	1 cut(s)	415
BtgZI	GCGATG	1 cut(s)	885
BtsCI	GGATG	3 cut(s)	104, 702, 1233
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	4 cut(s)	215, 759, 821, 889
Cfr13I	GGNCC	2 cut(s)	354, 1381
ClaI	ATCGAT	1 cut(s)	415
CseI	GACGC	2 cut(s)	967, 1441
Csp6I	GTAC	4 cut(s)	78, 622, 787, 1074
CviAII	CATG	8 cut(s)	495, 594, 605, 720, 754, 767, 842, 1413
CviQI	GTAC	4 cut(s)	78, 622, 787, 1074
DdeI	CTNAG	6 cut(s)	84, 483, 650, 1043, 1099, 1387
DpnI	GATC	4 cut(s)	285, 376, 451, 1445
DpnII	GATC	4 cut(s)	283, 374, 449, 1443
DraI	TTTAAA	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	36, 1347
EarI	CTCTTC	2 cut(s)	36, 1347
Ecl136II	GAGCTC	1 cut(s)	1047
Eco130I	CCWWGG	2 cut(s)	331, 1051
Eco147I	AGGCCT	1 cut(s)	1062
Eco24I	GRGCYC	1 cut(s)	1049
Eco47I	GGWCC	1 cut(s)	1381
Eco53kI	GAGCTC	1 cut(s)	1047
EcoICRI	GAGCTC	1 cut(s)	1047
EcoT14I	CCWWGG	2 cut(s)	331, 1051
EcoT38I	GRGCYC	1 cut(s)	1049
ErhI	CCWWGG	2 cut(s)	331, 1051
FaeI	CATG	8 cut(s)	498, 597, 608, 723, 757, 770, 845, 1416
FaqI	GGGAC	1 cut(s)	1044
FatI	CATG	8 cut(s)	494, 593, 604, 719, 753, 766, 841, 1412
FbaI	TGATCA	1 cut(s)	1443
Fnu4HI	GCNGC	1 cut(s)	732
FokI	GGATG	3 cut(s)	91, 689, 1240
FriOI	GRGCYC	1 cut(s)	1049
Fsp4HI	GCNGC	1 cut(s)	732
FspBI	CTAG	6 cut(s)	51, 426, 762, 846, 888, 1302
GluI	GCNGC	1 cut(s)	732
GsuI	CTGGAG	1 cut(s)	900
HaeIII	GGCC	2 cut(s)	356, 1062
HapII	CCGG	1 cut(s)	1379
HgaI	GACGC	2 cut(s)	967, 1441
Hin1II	CATG	8 cut(s)	498, 597, 608, 723, 757, 770, 845, 1416
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	1379
Hpy166II	GTNNAC	3 cut(s)	208, 1324, 1384
Hpy188I	TCNGA	5 cut(s)	486, 950, 1044, 1251, 1351
Hpy188III	TCNNGA	6 cut(s)	167, 447, 898, 917, 968, 1279
Hpy8I	GTNNAC	3 cut(s)	208, 1324, 1384
HpyAV	CCTTC	2 cut(s)	1000, 1253
HpyCH4IV	ACGT	3 cut(s)	187, 463, 1394
HpyCH4V	TGCA	8 cut(s)	95, 608, 719, 1036, 1136, 1156, 1168, 1329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 716, 731
HpyF3I	CTNAG	6 cut(s)	84, 483, 650, 1043, 1099, 1387
HpySE526I	ACGT	3 cut(s)	187, 463, 1394
Hsp92II	CATG	8 cut(s)	498, 597, 608, 723, 757, 770, 845, 1416
Ksp22I	TGATCA	1 cut(s)	1443
Kzo9I	GATC	4 cut(s)	283, 374, 449, 1443
LmnI	GCTCC	4 cut(s)	776, 884, 1052, 1381
Lsp1109I	GCAGC	1 cut(s)	718
LweI	GCATC	3 cut(s)	113, 711, 821
MaeI	CTAG	6 cut(s)	51, 426, 762, 846, 888, 1302
MaeII	ACGT	3 cut(s)	187, 463, 1394
MaeIII	GTNAC	3 cut(s)	296, 433, 1390
MalI	GATC	4 cut(s)	285, 376, 451, 1445
MboI	GATC	4 cut(s)	283, 374, 449, 1443
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	967, 1049
MluCI	AATT	5 cut(s)	12, 221, 467, 581, 943
MlyI	GAGTC	3 cut(s)	107, 623, 899
MmeI	TCCRAC	2 cut(s)	754, 1167
MnlI	CCTC	7 cut(s)	297, 311, 454, 716, 1073, 1183, 1257
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	5 cut(s)	132, 677, 738, 942, 1257
MslI	CAYNNNNRTG	2 cut(s)	533, 846
MspI	CCGG	1 cut(s)	1379
Mva1269I	GAATGC	1 cut(s)	52
MvnI	CGCG	1 cut(s)	978
MwoI	GCNNNNNNNGC	3 cut(s)	101, 716, 731
NdeII	GATC	4 cut(s)	283, 374, 449, 1443
NheI	GCTAGC	1 cut(s)	887
NlaIII	CATG	8 cut(s)	498, 597, 608, 723, 757, 770, 845, 1416
NlaIV	GGNNCC	4 cut(s)	285, 355, 474, 778
NspI	RCATGY	2 cut(s)	757, 845
NspV	TTCGAA	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	1062
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	8 cut(s)	336, 386, 538, 663, 971, 986, 1267, 1275
PkrI	GCNGC	1 cut(s)	733
PleI	GAGTC	3 cut(s)	107, 622, 899
PpsI	GAGTC	3 cut(s)	107, 622, 899
Psp124BI	GAGCTC	1 cut(s)	1049
Psp1406I	AACGTT	1 cut(s)	1394
PspN4I	GGNNCC	4 cut(s)	285, 355, 474, 778
PspPI	GGNCC	2 cut(s)	354, 1381
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	4 cut(s)	79, 623, 788, 1075
RsaNI	GTAC	4 cut(s)	78, 622, 787, 1074
RseI	CAYNNNNRTG	2 cut(s)	533, 846
SacI	GAGCTC	1 cut(s)	1049
SaqAI	TTAA	5 cut(s)	132, 677, 738, 942, 1257
SatI	GCNGC	1 cut(s)	732
Sau3AI	GATC	4 cut(s)	283, 374, 449, 1443
Sau96I	GGNCC	2 cut(s)	354, 1381
SchI	GAGTC	3 cut(s)	107, 623, 899
SduI	GDGCHC	2 cut(s)	967, 1049
SfaNI	GCATC	3 cut(s)	113, 711, 821
SfuI	TTCGAA	1 cut(s)	661
SinI	GGWCC	1 cut(s)	1381
SmiMI	CAYNNNNRTG	2 cut(s)	533, 846
Sse9I	AATT	5 cut(s)	12, 221, 467, 581, 943
SseBI	AGGCCT	1 cut(s)	1062
SspMI	CTAG	6 cut(s)	51, 426, 762, 846, 888, 1302
SstI	GAGCTC	1 cut(s)	1049
StuI	AGGCCT	1 cut(s)	1062
StyI	CCWWGG	2 cut(s)	331, 1051
TaiI	ACGT	3 cut(s)	190, 466, 1397
TaqI	TCGA	5 cut(s)	166, 339, 415, 448, 661
TasI	AATT	5 cut(s)	12, 221, 467, 581, 943
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	8 cut(s)	336, 386, 538, 663, 971, 986, 1267, 1275
Tru1I	TTAA	5 cut(s)	132, 677, 738, 942, 1257
Tru9I	TTAA	5 cut(s)	132, 677, 738, 942, 1257
TscAI	CASTG	1 cut(s)	285
TseI	GCWGC	1 cut(s)	731
TspDTI	ATGAA	2 cut(s)	167, 383
TspRI	CASTG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	1381
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	2 cut(s)	757, 845
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	6 cut(s)	51, 426, 762, 846, 888, 1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.