Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Reverse (-)

359593 .. 362350

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00690.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTGGGATCACCACCAGCTTCGCATCCAAGCCTATCCTATCCAAAACGACGCCGTTTCATTCCTCATTCTCCTCCAAGCTCTTCGGCCTCCGCTTTAATCACGTTTATCTCATAAACTCGAGCTCTTGTAGCTCTCTCTCCTCCTCCGCCATTACCAGCCCGGTCACCGCTCGGTTCGGCGGCGGCGGGCCCCGCAGGTCGAGCAATGACCGCCGGAGACAGCAGAGCGACGCCGAGGATGACGATAAGGCCCTTGATATCTCCTCTATCAGGTCAGCTACGGTGAGGCTTATTGATCAGAAGCAAGAAATGGTTGGGGTGGTGTCGAAGAGCGAGGCGATTCGAATGGCGGATGAGGCTGACCTTGACTTGGTAATTTTATCTCCAGATGCAGATCCCCCGGTTCTCAGGATTATGGATTACAATAAATATCGGTATGAACAACAAAAAAAGAAAAGAGTGTCGCAGAAGAAAAGTGCAGCCAGTCGCATGGATTTGAAGGAGCTCAAAATGGGTTACAACATTGATCAACATGATTATTCTGTACGTATGAGAGCCGCCCAGAAGTTTCTGAAAGATGGTGATAAGGTCAAGGTTATTGTCAACTTGAAGGGTCGGGAGAATGAGTTCCGAAATAAAGCTATCGAGCTTCTCAAACGCTTTCAAAGTGAAGTTGGGGAGCTTGCAACAGAGGAAGCGAAAAGCTTCAGCGACAGAAACATGTTTATAGTTTTAGTTCCAAACAAGGCTATTCTCCAGAAAGCTCAAGAGCCATCAAAGAAAAAGGAGAACCCTGCAGTGAATGAAGTATCTTCAAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

276

Amino Acids

30.8

Weight (kDa)

9.64

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_N	PF05198	24 - 83	4.8e-26	Translation initiation factor IF-3, N-terminal domain
IF3_C	PF00707	95 - 178	8.8e-25	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	173
AclWI	GGATC	2 cut(s)	17, 392
AcuI	CTGAAG	1 cut(s)	694
AcyI	GRCGYC	2 cut(s)	53, 234
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	2 cut(s)	273, 373
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	4 cut(s)	502, 613, 668, 819
AloI	GAACNNNNNNTCC	2 cut(s)	614, 646
Alw21I	GWGCWC	2 cut(s)	128, 510
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	17, 392
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	3 cut(s)	88, 191, 252
ApaI	GGGCCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	482
Asp700I	GAANNNNTTC	2 cut(s)	629, 707
AspS9I	GGNCC	3 cut(s)	191, 192, 253
AsuC2I	CCSGG	2 cut(s)	164, 404
AsuHPI	GGTGA	4 cut(s)	4, 160, 298, 596
AsuII	TTCGAA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	195
BanII	GRGCYC	3 cut(s)	128, 195, 510
Bbv12I	GWGCWC	2 cut(s)	128, 510
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	2 cut(s)	575, 784
BceAI	ACGGC	1 cut(s)	40
BclI	TGATCA	2 cut(s)	298, 529
BcnI	CCSGG	2 cut(s)	164, 404
BcoDI	GTCTC	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	798
BfuAI	ACCTGC	1 cut(s)	189
BisI	GCNGC	4 cut(s)	184, 187, 483, 561
BlsI	GCNGC	4 cut(s)	185, 188, 484, 562
Bme1390I	CCNGG	2 cut(s)	164, 404
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	191, 192, 253
BmiI	GGNNCC	2 cut(s)	193, 194
BmrFI	CCNGG	2 cut(s)	164, 404
BmsI	GCATC	2 cut(s)	35, 382
BpmI	CTGGAG	2 cut(s)	372, 743
Bpu14I	TTCGAA	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	753
BpuMI	CCSGG	2 cut(s)	164, 404
BsaAI	YACGTR	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	396
BsaHI	GRCGYC	2 cut(s)	53, 234
BsaJI	CCNNGG	2 cut(s)	237, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 373
Bse1I	ACTGG	1 cut(s)	486
Bse3DI	GCAATG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	237, 402
BseGI	GGATG	3 cut(s)	26, 247, 361
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	273, 373
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	424
BseNI	ACTGG	1 cut(s)	486
BseRI	GAGGAG	4 cut(s)	64, 133, 136, 256
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	494
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	90, 193, 254
BsiHKAI	GWGCWC	2 cut(s)	128, 510
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	164, 217, 404
BslI	CCNNNNNNNGG	2 cut(s)	273, 373
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	90, 193, 254
BsoBI	CYCGRG	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	346
Bsp120I	GGGCCC	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	128, 195, 510
Bsp143I	GATC	4 cut(s)	9, 298, 397, 529
BspANI	GGCC	3 cut(s)	90, 193, 254
BspCNI	CTCAG	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	193, 194
BspMAI	CTGCAG	1 cut(s)	802
BspMI	ACCTGC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	17, 392
BspQI	GCTCTTC	2 cut(s)	89, 326
BspT104I	TTCGAA	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	486
BssECI	CCNNGG	2 cut(s)	237, 402
BssMI	GATC	4 cut(s)	9, 298, 397, 529
BssNI	GRCGYC	2 cut(s)	53, 234
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	89, 326
BstACI	GRCGYC	2 cut(s)	53, 234
BstBAI	YACGTR	1 cut(s)	551
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	191, 687
BstDEI	CTNAG	1 cut(s)	410
BstEII	GGTNACC	1 cut(s)	166
BstENI	CCTNNNNNAGG	1 cut(s)	271
BstF5I	GGATG	3 cut(s)	26, 247, 361
BstKTI	GATC	4 cut(s)	12, 301, 400, 532
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	4 cut(s)	9, 298, 397, 529
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 195, 204, 213, 359
BstNSI	RCATGY	1 cut(s)	727
BstPI	GGTNACC	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	162, 402
BstSFI	CTRYAG	1 cut(s)	798
BstSLI	GKGCMC	1 cut(s)	195
BstSNI	TACGTA	1 cut(s)	551
BstV1I	GCAGC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	90, 193, 254
BtsCI	GGATG	3 cut(s)	26, 247, 361
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	807
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	191, 687
Cfr13I	GGNCC	3 cut(s)	191, 192, 253
CseI	GACGC	2 cut(s)	61, 242
Csp6I	GTAC	1 cut(s)	548
CviAII	CATG	3 cut(s)	493, 536, 724
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	4 cut(s)	11, 300, 399, 531
DpnII	GATC	4 cut(s)	9, 298, 397, 529
Eam1104I	CTCTTC	2 cut(s)	89, 326
EarI	CTCTTC	2 cut(s)	89, 326
EciI	GGCGGA	2 cut(s)	139, 368
Ecl136II	GAGCTC	2 cut(s)	126, 508
Eco105I	TACGTA	1 cut(s)	551
Eco24I	GRGCYC	3 cut(s)	128, 195, 510
Eco32I	GATATC	1 cut(s)	262
Eco53kI	GAGCTC	2 cut(s)	126, 508
Eco57I	CTGAAG	1 cut(s)	694
Eco88I	CYCGRG	1 cut(s)	121
Eco91I	GGTNACC	1 cut(s)	166
EcoICRI	GAGCTC	2 cut(s)	126, 508
EcoNI	CCTNNNNNAGG	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	192, 253
EcoO65I	GGTNACC	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	262
EcoT38I	GRGCYC	3 cut(s)	128, 195, 510
FaeI	CATG	3 cut(s)	496, 539, 727
FaiI	YATR	8 cut(s)	116, 419, 441, 494, 537, 554, 725, 731
FatI	CATG	3 cut(s)	492, 535, 723
FauI	CCCGC	2 cut(s)	182, 203
FbaI	TGATCA	2 cut(s)	298, 529
Fnu4HI	GCNGC	4 cut(s)	184, 187, 483, 561
FokI	GGATG	3 cut(s)	13, 254, 368
FriOI	GRGCYC	3 cut(s)	128, 195, 510
Fsp4HI	GCNGC	4 cut(s)	184, 187, 483, 561
GluI	GCNGC	4 cut(s)	184, 187, 483, 561
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	2 cut(s)	372, 743
HaeIII	GGCC	3 cut(s)	90, 193, 254
HapII	CCGG	3 cut(s)	164, 217, 404
HgaI	GACGC	2 cut(s)	61, 242
Hin1I	GRCGYC	2 cut(s)	53, 234
Hin1II	CATG	3 cut(s)	496, 539, 727
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	706
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	3 cut(s)	164, 217, 404
HphI	GGTGA	4 cut(s)	4, 160, 298, 596
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	4 cut(s)	303, 576, 635, 827
Hpy188III	TCNNGA	5 cut(s)	389, 412, 620, 760, 770
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	2 cut(s)	55, 236
HpyAV	CCTTC	2 cut(s)	496, 607
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	2 cut(s)	105, 550
HpyCH4V	TGCA	4 cut(s)	395, 482, 689, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 195, 204, 213, 359
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	2 cut(s)	105, 550
Hsp92I	GRCGYC	2 cut(s)	53, 234
Hsp92II	CATG	3 cut(s)	496, 539, 727
Ksp22I	TGATCA	2 cut(s)	298, 529
Kzo9I	GATC	4 cut(s)	9, 298, 397, 529
LguI	GCTCTTC	2 cut(s)	89, 326
LmnI	GCTCC	2 cut(s)	505, 682
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	2 cut(s)	35, 382
MaeII	ACGT	2 cut(s)	105, 550
MaeIII	GTNAC	2 cut(s)	166, 518
MalI	GATC	4 cut(s)	11, 300, 399, 531
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	4 cut(s)	9, 298, 397, 529
MboII	GAAGA	4 cut(s)	76, 343, 484, 807
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	3 cut(s)	128, 195, 510
MluCI	AATT	1 cut(s)	378
MroXI	GAANNNNTTC	2 cut(s)	629, 707
MseI	TTAA	1 cut(s)	99
MspI	CCGG	3 cut(s)	164, 217, 404
MspR9I	CCNGG	2 cut(s)	164, 404
MwoI	GCNNNNNNNGC	5 cut(s)	132, 195, 204, 213, 359
NciI	CCSGG	2 cut(s)	164, 404
NdeII	GATC	4 cut(s)	9, 298, 397, 529
NlaIII	CATG	3 cut(s)	496, 539, 727
NlaIV	GGNNCC	2 cut(s)	193, 194
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	1 cut(s)	727
NspV	TTCGAA	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	121
PciI	ACATGT	1 cut(s)	723
PciSI	GCTCTTC	2 cut(s)	89, 326
PdmI	GAANNNNTTC	2 cut(s)	629, 707
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	4 cut(s)	185, 188, 484, 562
Ppu21I	YACGTR	1 cut(s)	551
PscI	ACATGT	1 cut(s)	723
Psp124BI	GAGCTC	2 cut(s)	128, 510
PspEI	GGTNACC	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	193, 194
PspOMI	GGGCCC	1 cut(s)	191
PspPI	GGNCC	3 cut(s)	191, 192, 253
PspXI	VCTCGAGB	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	802
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
SacI	GAGCTC	2 cut(s)	128, 510
SapI	GCTCTTC	2 cut(s)	89, 326
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	4 cut(s)	184, 187, 483, 561
Sau3AI	GATC	4 cut(s)	9, 298, 397, 529
Sau96I	GGNCC	3 cut(s)	191, 192, 253
ScrFI	CCNGG	2 cut(s)	164, 404
SduI	GDGCHC	3 cut(s)	128, 195, 510
SfaNI	GCATC	2 cut(s)	35, 382
SfcI	CTRYAG	1 cut(s)	798
Sfr274I	CTCGAG	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	346
SlaI	CTCGAG	1 cut(s)	121
SmlI	CTYRAG	2 cut(s)	121, 768
SmoI	CTYRAG	2 cut(s)	121, 768
SnaBI	TACGTA	1 cut(s)	551
Sse9I	AATT	1 cut(s)	378
SstI	GAGCTC	2 cut(s)	128, 510
StyD4I	CCNGG	2 cut(s)	162, 402
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	2 cut(s)	108, 553
TaqI	TCGA	5 cut(s)	122, 203, 329, 346, 648
TasI	AATT	1 cut(s)	378
TauI	GCSGC	3 cut(s)	186, 189, 563
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	807
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	50, 456, 822
TspRI	CASTG	1 cut(s)	807
XagI	CCTNNNNNAGG	1 cut(s)	271
XceI	RCATGY	1 cut(s)	727
XhoI	CTCGAG	1 cut(s)	121
XmnI	GAANNNNTTC	2 cut(s)	629, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.