Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Reverse (-)

11095262 .. 11098989

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1150400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTTCGTAAATTCCAGCTCTTTCAGCTCCCTCTCATCCACGTCTGCAGCCGAATCACAGCCCGTTTCGGCGGGGGGCCCCGCTACGACAACTCGAGCAATGACTCGCGGTGCTCACGAAAAGGCGACTCCTCAAACGAGGACGAGGCCCTCGATATCTCCAGCGTCAAGTCGGATACTGTGAGGCTAATCGACGCGAAGCAGAACATGGTTGGAGTGGTGAGTAAAAGTGAGGCTATTCGACTGGCTGACGATGCTGAACTCGATTTGGTAATATTATCTGCAGAGGCAGATCCTCCAGTTCTCAGGATAATGGATTACAATAAATATAGATACGAACAGCAAAAGAAGAAAAGAGACCAGCAGAAGAAAAGTGCAGCTAGCCGCATGGATTTGAAGGAGCTCAAAATGGGTTACAACATCGACCAACATGATTACTCCATGCGCTTGAGAGCTGCCCAGAAGTTTTTGAAAGATGGTGATAAGGTCAAGGTTATAGTCAATTTGAAAGGCCGTGAAAAATGGTTCCGTGATATTGCTGTTGAGCTGATCCAAAAATTCCAGAGTGATGTCGGGGAGCTTGCAACAGAAGAATCTAGACACTTCAGCGAAAAGATGATGACTATGGTTTTAGTTCCCAACAAGGCTGTTCTGCAGAAACCTCAAGAACCGCCGAAGAAAAAAGAAAGCCCTGCCGTGAAGGAAATATCAGCTGGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

241

Amino Acids

27.4

Weight (kDa)

9.31

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_N	PF05198	56 - 121	6e-25	Translation initiation factor IF-3, N-terminal domain
IF3_C	PF00707	131 - 214	1.4e-23	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	109, 197
AciI	CCGC	5 cut(s)	72, 82, 109, 385, 671
AclWI	GGATC	2 cut(s)	287, 544
AcsI	RAATTY	2 cut(s)	11, 557
AcuI	CTGAAG	1 cut(s)	589
AgsI	TTSAA	3 cut(s)	397, 472, 508
AjiI	CACGTC	1 cut(s)	43
AluBI	AGCT	8 cut(s)	19, 28, 380, 403, 455, 547, 580, 713
AluI	AGCT	8 cut(s)	19, 28, 380, 403, 455, 547, 580, 713
Alw21I	GWGCWC	2 cut(s)	116, 405
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	287, 544
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	3 cut(s)	77, 147, 511
ApaI	GGGCCC	1 cut(s)	81
ApeKI	GCWGC	3 cut(s)	48, 377, 455
ApoI	RAATTY	2 cut(s)	11, 557
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	3 cut(s)	77, 78, 148
AsuHPI	GGTGA	2 cut(s)	232, 491
AsuNHI	GCTAGC	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	81
BanII	GRGCYC	2 cut(s)	81, 405
Bbv12I	GWGCWC	2 cut(s)	116, 405
BbvI	GCAGC	3 cut(s)	60, 389, 442
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	2 cut(s)	498, 680
BciVI	GTATCC	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	2 cut(s)	381, 597
BfmI	CTRYAG	3 cut(s)	46, 282, 653
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	4 cut(s)	49, 378, 385, 456
BlsI	GCNGC	4 cut(s)	50, 379, 386, 457
BmeT110I	CYCGRG	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	77, 78, 148
BmiI	GGNNCC	4 cut(s)	78, 79, 80, 527
BmsI	GCATC	1 cut(s)	244
BmtI	GCTAGC	1 cut(s)	384
BpmI	CTGGAG	2 cut(s)	145, 282
BpuEI	CTTGAG	2 cut(s)	469, 648
BsaI	GGTCTC	1 cut(s)	351
Bse1I	ACTGG	2 cut(s)	249, 299
Bse3DI	GCAATG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	249, 299
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	60, 389, 442
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	2 cut(s)	109, 197
BshFI	GGCC	3 cut(s)	79, 149, 513
BsiHKAI	GWGCWC	2 cut(s)	116, 405
BsiHKCI	CYCGRG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	79, 149, 513
Bso31I	GGTCTC	1 cut(s)	351
BsoBI	CYCGRG	1 cut(s)	94
Bsp120I	GGGCCC	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	81, 116, 405
Bsp143I	GATC	2 cut(s)	292, 549
BspACI	CCGC	5 cut(s)	72, 82, 109, 385, 671
BspANI	GGCC	3 cut(s)	79, 149, 513
BspCNI	CTCAG	1 cut(s)	318
BspFNI	CGCG	2 cut(s)	109, 197
BspLI	GGNNCC	4 cut(s)	78, 79, 80, 527
BspMAI	CTGCAG	3 cut(s)	50, 286, 657
BspOI	GCTAGC	1 cut(s)	384
BspPI	GGATC	2 cut(s)	287, 544
BspTNI	GGTCTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	249, 299
BssMI	GATC	2 cut(s)	292, 549
Bst4CI	ACNGT	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	382, 582
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	2 cut(s)	109, 197
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	2 cut(s)	295, 552
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	292, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 254
BstSFI	CTRYAG	3 cut(s)	46, 282, 653
BstSLI	GKGCMC	1 cut(s)	81
BstUI	CGCG	2 cut(s)	109, 197
BstV1I	GCAGC	3 cut(s)	60, 389, 442
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	79, 149, 513
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	382, 582
CfoI	GCGC	1 cut(s)	447
Cfr13I	GGNCC	3 cut(s)	77, 78, 148
CseI	GACGC	2 cut(s)	154, 203
CviAII	CATG	4 cut(s)	208, 388, 431, 442
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	2 cut(s)	294, 551
DpnII	GATC	2 cut(s)	292, 549
Ecl136II	GAGCTC	1 cut(s)	403
Eco24I	GRGCYC	2 cut(s)	81, 405
Eco31I	GGTCTC	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	3 cut(s)	77, 78, 148
EcoRV	GATATC	1 cut(s)	157
EcoT38I	GRGCYC	2 cut(s)	81, 405
FaeI	CATG	4 cut(s)	211, 391, 434, 445
FaiI	YATR	7 cut(s)	209, 330, 389, 432, 443, 497, 626
FatI	CATG	4 cut(s)	207, 387, 430, 441
FauI	CCCGC	2 cut(s)	65, 89
Fnu4HI	GCNGC	4 cut(s)	49, 378, 385, 456
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	2 cut(s)	81, 405
Fsp4HI	GCNGC	4 cut(s)	49, 378, 385, 456
FspBI	CTAG	2 cut(s)	381, 597
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	4 cut(s)	49, 378, 385, 456
GsuI	CTGGAG	2 cut(s)	145, 282
HaeIII	GGCC	3 cut(s)	79, 149, 513
HgaI	GACGC	2 cut(s)	154, 203
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	4 cut(s)	211, 391, 434, 445
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HinfI	GANTC	4 cut(s)	54, 104, 128, 593
HphI	GGTGA	2 cut(s)	232, 491
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	5 cut(s)	117, 307, 562, 597, 665
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	391, 694
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	48, 284, 377, 584, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 254
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	211, 391, 434, 445
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	292, 549
LmnI	GCTCC	3 cut(s)	33, 400, 577
Lsp1109I	GCAGC	3 cut(s)	60, 389, 442
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	381, 597
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	294, 551
MboI	GATC	2 cut(s)	292, 549
MboII	GAAGA	4 cut(s)	361, 379, 602, 688
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	81, 116, 405
MluCI	AATT	3 cut(s)	11, 502, 557
MlyI	GAGTC	2 cut(s)	98, 122
MmeI	TCCRAC	2 cut(s)	153, 193
MspA1I	CMGCKG	1 cut(s)	713
MvnI	CGCG	2 cut(s)	109, 197
MwoI	GCNNNNNNNGC	2 cut(s)	25, 254
NdeII	GATC	2 cut(s)	292, 549
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	4 cut(s)	211, 391, 434, 445
NlaIV	GGNNCC	4 cut(s)	78, 79, 80, 527
PaeR7I	CTCGAG	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	54, 593
PkrI	GCNGC	4 cut(s)	50, 379, 386, 457
PleI	GAGTC	2 cut(s)	98, 122
PpsI	GAGTC	2 cut(s)	98, 122
Psp124BI	GAGCTC	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	78, 79, 80, 527
PspOMI	GGGCCC	1 cut(s)	77
PspPI	GGNCC	3 cut(s)	77, 78, 148
PspXI	VCTCGAGB	1 cut(s)	94
PstI	CTGCAG	3 cut(s)	50, 286, 657
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	713
SacI	GAGCTC	1 cut(s)	405
SatI	GCNGC	4 cut(s)	49, 378, 385, 456
Sau3AI	GATC	2 cut(s)	292, 549
Sau96I	GGNCC	3 cut(s)	77, 78, 148
SchI	GAGTC	2 cut(s)	98, 122
SduI	GDGCHC	3 cut(s)	81, 116, 405
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	3 cut(s)	46, 282, 653
Sfr274I	CTCGAG	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	94
SmlI	CTYRAG	3 cut(s)	94, 448, 663
SmoI	CTYRAG	3 cut(s)	94, 448, 663
Sse9I	AATT	3 cut(s)	11, 502, 557
SsiI	CCGC	5 cut(s)	72, 82, 109, 385, 671
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	2 cut(s)	381, 597
SstI	GAGCTC	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	6 cut(s)	95, 153, 192, 241, 264, 423
TasI	AATT	3 cut(s)	11, 502, 557
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	54, 593
TseI	GCWGC	3 cut(s)	48, 377, 455
TspGWI	ACGGA	1 cut(s)	518
XapI	RAATTY	2 cut(s)	11, 557
XbaI	TCTAGA	1 cut(s)	596
XhoI	CTCGAG	1 cut(s)	94
XspI	CTAG	2 cut(s)	381, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.