Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Forward (+)

14960594 .. 14962466

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G30690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTGGGATCACCAGCACCGTTGGATTCAACGCCATTCTCGCCGGAGCCACCAAAACGGTGTCGCATCCTGTTAAATCTAAGCTCTTTGGTCTTCGACTCTGTGTACCCGAATTCTCAATTGTTTCTCTTTCCCCTTATCATCATCGCCGTTGTCCCGCCATCACTTGCCGTTACGGAGGCGGTGGTGGCGGAGGCTCTAGATTTCCCGGCGATAGGAGAGGTAGGCAGAAAGAATCCGAGGATGATGATTCGCTTGATATCTCAGCTATTAGGTCAGCCACTGTTAGGCTTATTGATGATCAGCAGAACATGATTGGTTTAGTTTCCAAAGAAGAAGCTGTTCGAAGAGCTGAAGATGCTGAGCTTGATCTGGTGATTCTTTCGCCGGATGCAGATCCTCCGGTTGTTAGAATGATGGATTACAGTAAATACAGATATGAGCAGCAAAAGAGGAAAAAGGAACAGCAGAAGAAAACTACTCGAATGGACTTGAAGGAGCTTAAAATGGGTTATAACATCGATCAGCATGATTATTCTGTACGCATGAGAGCAGCCCGGAAGTTCTTGCAAGACGGTGACAAGGTTAAAGTGATTGTGAACATGAAAGGCCGAGAAAACGAGTTCAGAAATATTGCTATTGAGCTCCTCAGACGTTTTCAGACTGAAATAGGAGAGCTTGGTACTGAGGAGAGCAAAAACTTTCGGGACAGAAATTTGTTTATTGTCTTGGTGCCAAACAAGGAAGTTATTCGGAAAGTGCAAGAACCACCCCCAAAAAAGAAGAAAAAGCCAGCGGATGATAAAGTTTCAGCAGCAAATATAACTGCAACACAAGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

281

Amino Acids

31.82

Weight (kDa)

9.55

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_N	PF05198	90 - 144	2.2e-18	Translation initiation factor IF-3, N-terminal domain
IF3_C	PF00707	142 - 219	2.4e-20	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	733
AciI	CCGC	4 cut(s)	159, 183, 192, 797
AclWI	GGATC	2 cut(s)	17, 392
AcsI	RAATTY	2 cut(s)	113, 715
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	3 cut(s)	108, 543, 685
AfiI	CCNNNNNNNGG	2 cut(s)	216, 288
AgsI	TTSAA	2 cut(s)	31, 496
AluBI	AGCT	8 cut(s)	85, 269, 341, 353, 367, 502, 646, 679
AluI	AGCT	8 cut(s)	85, 269, 341, 353, 367, 502, 646, 679
Alw21I	GWGCWC	1 cut(s)	648
AlwI	GGATC	2 cut(s)	17, 392
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	3 cut(s)	445, 554, 815
ApoI	RAATTY	2 cut(s)	113, 715
Asp700I	GAANNNNTTC	2 cut(s)	342, 750
AsuC2I	CCSGG	2 cut(s)	210, 559
AsuHPI	GGTGA	3 cut(s)	4, 388, 590
AsuII	TTCGAA	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	3 cut(s)	457, 566, 827
BccI	CCATC	2 cut(s)	170, 412
BceAI	ACGGC	2 cut(s)	135, 156
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	2 cut(s)	210, 559
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	3 cut(s)	446, 555, 816
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	3 cut(s)	447, 556, 817
Bme1390I	CCNGG	2 cut(s)	210, 559
BmiI	GGNNCC	2 cut(s)	49, 735
BmrFI	CCNGG	2 cut(s)	210, 559
BmsI	GCATC	3 cut(s)	76, 349, 382
BpiI	GAAGAC	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	346
BpuMI	CCSGG	2 cut(s)	210, 559
Bsa29I	ATCGAT	1 cut(s)	522
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 288
Bse8I	GATNNNNATC	1 cut(s)	396
BseCI	ATCGAT	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	4 cut(s)	67, 250, 397, 805
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	216, 288
BseMII	CTCAG	4 cut(s)	279, 354, 664, 678
BseRI	GAGGAG	2 cut(s)	638, 704
BseXI	GCAGC	3 cut(s)	457, 566, 827
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	612
BshNI	GGYRCC	1 cut(s)	733
BshVI	ATCGAT	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	648
BsiSI	CCGG	5 cut(s)	45, 210, 389, 404, 559
BslFI	GGGAC	2 cut(s)	141, 722
BslI	CCNNNNNNNGG	2 cut(s)	216, 288
BsmFI	GGGAC	2 cut(s)	141, 722
BsnI	GGCC	1 cut(s)	612
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	5 cut(s)	9, 301, 370, 397, 523
Bsp1720I	GCTNAGC	1 cut(s)	363
BspACI	CCGC	4 cut(s)	159, 183, 192, 797
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	4 cut(s)	278, 355, 663, 679
BspDI	ATCGAT	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	49, 735
BspPI	GGATC	2 cut(s)	17, 392
BspQI	GCTCTTC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	733
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	5 cut(s)	9, 301, 370, 397, 523
Bst4CI	ACNGT	5 cut(s)	22, 61, 286, 428, 578
Bst6I	CTCTTC	1 cut(s)	343
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	5 cut(s)	81, 265, 363, 650, 687
BstF5I	GGATG	4 cut(s)	67, 250, 397, 805
BstKTI	GATC	5 cut(s)	12, 304, 373, 400, 526
BstMBI	GATC	5 cut(s)	9, 301, 370, 397, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 189, 359
BstSCI	CCNGG	2 cut(s)	208, 557
BstV1I	GCAGC	3 cut(s)	457, 566, 827
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	612
BsuTUI	ATCGAT	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	4 cut(s)	67, 250, 397, 805
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	795
CaiI	CAGNNNCTG	1 cut(s)	284
ClaI	ATCGAT	1 cut(s)	522
Csp6I	GTAC	3 cut(s)	107, 542, 684
CviAII	CATG	4 cut(s)	313, 530, 547, 604
CviQI	GTAC	3 cut(s)	107, 542, 684
DdeI	CTNAG	5 cut(s)	81, 265, 363, 650, 687
DpnI	GATC	5 cut(s)	11, 303, 372, 399, 525
DpnII	GATC	5 cut(s)	9, 301, 370, 397, 523
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	648
FaeI	CATG	4 cut(s)	316, 533, 550, 607
FaiI	YATR	9 cut(s)	314, 441, 516, 531, 548, 605, 824, 842, 844
FaqI	GGGAC	2 cut(s)	141, 722
FatI	CATG	4 cut(s)	312, 529, 546, 603
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	446, 555, 816
FokI	GGATG	4 cut(s)	54, 257, 404, 812
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	3 cut(s)	446, 555, 816
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	3 cut(s)	446, 555, 816
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	5 cut(s)	45, 210, 389, 404, 559
Hin1II	CATG	4 cut(s)	316, 533, 550, 607
HinfI	GANTC	5 cut(s)	27, 99, 236, 251, 379
HpaII	CCGG	5 cut(s)	45, 210, 389, 404, 559
HphI	GGTGA	3 cut(s)	4, 388, 590
Hpy166II	GTNNAC	2 cut(s)	107, 601
Hpy188I	TCNGA	5 cut(s)	241, 629, 653, 663, 756
Hpy188III	TCNNGA	2 cut(s)	201, 707
Hpy8I	GTNNAC	2 cut(s)	107, 601
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	5 cut(s)	22, 61, 286, 428, 578
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	4 cut(s)	395, 571, 763, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 189, 359
HpyF3I	CTNAG	5 cut(s)	81, 265, 363, 650, 687
HpySE526I	ACGT	1 cut(s)	655
Hsp92II	CATG	4 cut(s)	316, 533, 550, 607
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	9, 301, 370, 397, 523
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	3 cut(s)	47, 499, 651
LpnPI	CCDG	9 cut(s)	28, 58, 84, 223, 359, 402, 417, 572, 807
Lsp1109I	GCAGC	3 cut(s)	457, 566, 827
LweI	GCATC	3 cut(s)	76, 349, 382
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	2 cut(s)	173, 578
MalI	GATC	5 cut(s)	11, 303, 372, 399, 525
MboI	GATC	5 cut(s)	9, 301, 370, 397, 523
MboII	GAAGA	6 cut(s)	86, 347, 360, 368, 484, 796
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	3 cut(s)	113, 120, 715
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	8 cut(s)	173, 188, 215, 235, 411, 447, 659, 682
MroXI	GAANNNNTTC	2 cut(s)	342, 750
MseI	TTAA	3 cut(s)	75, 504, 588
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	5 cut(s)	45, 210, 389, 404, 559
MspR9I	CCNGG	2 cut(s)	210, 559
MunI	CAATTG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	41, 189, 359
NciI	CCSGG	2 cut(s)	210, 559
NdeII	GATC	5 cut(s)	9, 301, 370, 397, 523
NlaIII	CATG	4 cut(s)	316, 533, 550, 607
NlaIV	GGNNCC	2 cut(s)	49, 735
NmeAIII	GCCGAG	1 cut(s)	638
NmuCI	GTSAC	1 cut(s)	578
NspV	TTCGAA	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	343
PdmI	GAANNNNTTC	2 cut(s)	342, 750
PfeI	GAWTC	4 cut(s)	27, 236, 251, 379
PkrI	GCNGC	3 cut(s)	447, 556, 817
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PsiI	TTATAA	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	648
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	49, 735
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	3 cut(s)	108, 543, 685
RsaNI	GTAC	3 cut(s)	107, 542, 684
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	75, 504, 588
SatI	GCNGC	3 cut(s)	446, 555, 816
Sau3AI	GATC	5 cut(s)	9, 301, 370, 397, 523
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	2 cut(s)	210, 559
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	3 cut(s)	76, 349, 382
SfuI	TTCGAA	1 cut(s)	346
Sse9I	AATT	3 cut(s)	113, 120, 715
SsiI	CCGC	4 cut(s)	159, 183, 192, 797
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	648
StyD4I	CCNGG	2 cut(s)	208, 557
TaaI	ACNGT	5 cut(s)	22, 61, 286, 428, 578
TaiI	ACGT	1 cut(s)	658
TaqI	TCGA	4 cut(s)	97, 346, 484, 522
TasI	AATT	3 cut(s)	113, 120, 715
TfiI	GAWTC	4 cut(s)	27, 236, 251, 379
Tru1I	TTAA	3 cut(s)	75, 504, 588
Tru9I	TTAA	3 cut(s)	75, 504, 588
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	3 cut(s)	445, 554, 815
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	1 cut(s)	620
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	289
XapI	RAATTY	2 cut(s)	113, 715
XbaI	TCTAGA	1 cut(s)	200
XmnI	GAANNNNTTC	2 cut(s)	342, 750
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.