Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8289399.1

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 786

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8289399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 310 bp

ttacaacattgatcaacatgattattctgtacgtatgagagccgctcagaagtttctgaaagatggtgataaggtcaaggttatggtcaacttgaaaggtcgggaaaatgagttccgaaataaagctatcgagcttctcaaacgctttcaaagtgaagttggggagcttgcaacagaggaagccaaaagcttcagcgacagaaacatgtttatagttttagttccaaacaaggctattctccagaaagctcaagagccgtcaaagaaaaaggagaaccctgcagtgaatgaagtatcatcaagtgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

102

Amino Acids

11.7

Weight (kDa)

9.4

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	95, 150
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	5 cut(s)	126, 134, 167, 190, 249
AluI	AGCT	5 cut(s)	126, 134, 167, 190, 249
AsuHPI	GGTGA	1 cut(s)	78
BccI	CCATC	1 cut(s)	57
BceAI	ACGGC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	280
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	59
BspMAI	CTGCAG	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	45
BssMI	GATC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	280
BstSNI	TACGTA	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	2 cut(s)	18, 206
CviJI	RGCY	9 cut(s)	42, 126, 134, 167, 183, 190, 234, 249, 257
CviKI_1	RGCY	9 cut(s)	42, 126, 134, 167, 183, 190, 234, 249, 257
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eco105I	TACGTA	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	176
FaeI	CATG	2 cut(s)	21, 209
FaiI	YATR	5 cut(s)	19, 36, 84, 207, 213
FatI	CATG	2 cut(s)	17, 205
FbaI	TGATCA	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	225
Hin1II	CATG	2 cut(s)	21, 209
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	188
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	4 cut(s)	49, 58, 117, 309
Hpy188III	TCNNGA	3 cut(s)	102, 242, 252
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	171, 282
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	21, 209
Ksp22I	TGATCA	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	2 cut(s)	255, 292
MaeII	ACGT	1 cut(s)	32
MalI	GATC	1 cut(s)	13
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	1 cut(s)	11
MnlI	CCTC	1 cut(s)	170
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	21, 209
NspI	RCATGY	1 cut(s)	209
PciI	ACATGT	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	33
PscI	ACATGT	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	11
SetI	ASST	9 cut(s)	35, 76, 82, 101, 128, 136, 169, 192, 251
SfcI	CTRYAG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
SnaBI	TACGTA	1 cut(s)	33
SsiI	CCGC	1 cut(s)	43
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	130
TauI	GCSGC	1 cut(s)	45
TscAI	CASTG	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	304
TspRI	CASTG	1 cut(s)	289
XceI	RCATGY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.