Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Reverse (-)

9165141 .. 9167248

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13450.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGACTCGCGGCGCTCACGAAAAGGCGACTCTCCAACGAGGACGAGGCCTCGATATCTCCAGTGTCAAGTCGGATACTGTGAGGTTAATCGACGCGAAGCAGAACATGGTTGGAGTGGTGAGTAAAAGTGAGGCTATTCGACTGGCTGACGATGGTGAAGTCGATTTGGTAATATTATCTGCAGAGGCAGATCCTCCAGTTCTCAGGATAATGGATTACAATAAATATAGGTACGAACAGCAAAAGAAGAAAAGAGACCAGCAGAAGAAAAGTGCAGCGAGCCGCATGGATTTGAAGGAGCTCAAAATGGGTTACAACATCGACCAACATGATTACTCCGTGCGCTTGAGAACTGCCCAGAAGTTTTTGAAATATGGTGATAGGTTTGCTTACATTTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

135

Amino Acids

15.42

Weight (kDa)

9.52

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	9, 95
AciI	CCGC	2 cut(s)	9, 283
AclWI	GGATC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	295, 370
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	14, 345
AsuHPI	GGTGA	3 cut(s)	130, 167, 389
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	146
BciVI	GTATCC	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	10, 276, 283
BlsI	GCNGC	3 cut(s)	11, 277, 284
BpmI	CTGGAG	2 cut(s)	43, 180
BpuEI	CTTGAG	1 cut(s)	367
BsaI	GGTCTC	1 cut(s)	249
Bse1I	ACTGG	3 cut(s)	60, 147, 197
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	3 cut(s)	60, 147, 197
BseXI	GCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	2 cut(s)	9, 95
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	9, 283
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	2 cut(s)	9, 95
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	60, 147, 197
BssMI	GATC	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	203
BstFNI	CGCG	2 cut(s)	9, 95
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 345
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	2 cut(s)	9, 95
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	2 cut(s)	14, 345
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	3 cut(s)	106, 286, 329
CviJI	RGCY	5 cut(s)	48, 134, 146, 282, 301
CviKI_1	RGCY	5 cut(s)	48, 134, 146, 282, 301
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	301
Eco147I	AGGCCT	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	249
Eco32I	GATATC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoRV	GATATC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	3 cut(s)	109, 289, 332
FaiI	YATR	5 cut(s)	107, 228, 287, 330, 375
FatI	CATG	3 cut(s)	105, 285, 328
Fnu4HI	GCNGC	3 cut(s)	10, 276, 283
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	10, 276, 283
GlaI	GCGC	2 cut(s)	13, 344
GluI	GCNGC	3 cut(s)	10, 276, 283
GsuI	CTGGAG	2 cut(s)	43, 180
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	48
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	2 cut(s)	14, 345
Hin1II	CATG	3 cut(s)	109, 289, 332
Hin6I	GCGC	2 cut(s)	12, 343
HinP1I	GCGC	2 cut(s)	12, 343
HinfI	GANTC	2 cut(s)	4, 28
HphI	GGTGA	3 cut(s)	130, 167, 389
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	17, 205
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	182, 275
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	109, 289, 332
HspAI	GCGC	2 cut(s)	12, 343
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	73, 128, 190, 210, 272, 371
Lsp1109I	GCAGC	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	259, 277
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	3 cut(s)	51, 58, 91
MnlI	CCTC	7 cut(s)	32, 38, 59, 75, 124, 178, 204
MseI	TTAA	1 cut(s)	86
MvnI	CGCG	2 cut(s)	9, 95
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	3 cut(s)	109, 289, 332
PceI	AGGCCT	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	11, 277, 284
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	3 cut(s)	10, 276, 283
Sau3AI	GATC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	4 cut(s)	86, 233, 303, 386
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SseBI	AGGCCT	1 cut(s)	48
SsiI	CCGC	2 cut(s)	9, 283
SspI	AATATT	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	5 cut(s)	51, 90, 139, 162, 321
TauI	GCSGC	2 cut(s)	12, 285
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.