Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Reverse (-)

277183 .. 279998

Gene Structure 2816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00460.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTGGGATCACCACCAGCTTCGCATCGCAGCCCATGCTGTCATCCCGAACCACCACTTCCATAACGACGCCGTCTCCGCTCTCACTCTCCTCCGCCGACTCCAAACACTTCGGCGGCCTACTCCGTTTCAACAGCTCCTGTTTCATAAATTCCAGCTCTTTCAGCTCCCTCTCATCCACCAGCAGCCGAATCACCGCCCGTTTCGGCGGCGGGCCCCGATACAACAACTCCAGCAATGACTCCCGGCGCTCACGGAAAGGCGACTCCTCCGACGAGGACGAGGCCCTCGATATCTCCAGTGTCAAGTCGAATACTGTGCGGCTAATCGACGCCAAGCAGAACATGGTTGGAGTGGTGAGTAAAAGTGAGGCTATTCGACTGGCTGACGAAGCTGAACTCGATTTGGTAATATTATCTGCAGAGGCCGATCCTCCAGTTCTCAGGATAATGGATTACAATAAATATAGGTACGAACAGCAAAAGAAGAAAAGAGACCAGCAGAAGAAAAGTGCAGCGAGCCGCATGGATTTGAAGGAGCTCAAAATGGGTTACAACATTGACCAACATGATTACGCTGTGCGTTTGAGAGCTGCCCAGAAGTTTTTGAAAGATGGTGATAAGGTCAAGGTTATAGTCAACTTGAAAGGCCGTGAAAAATGGTTCCGTAATATTGCTGTTGAGCTTATCCAAAAATTCCAGAGTGATGTCGGGGAGCTTGCAACAGAAGAATCTAGACACTTCAGCGAAAAGATGATGACTATGGTTTTAGTTCCCAACAAGGCTGTTCTGCAGAAACCTCAAGAACCACCAAAGAAAAAAGAAAGCCCGGCCGCGAATGAAATATCAGCTAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

287

Amino Acids

31.8

Weight (kDa)

9.53

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	82
AccII	CGCG	1 cut(s)	836
AciI	CCGC	9 cut(s)	80, 96, 117, 198, 210, 213, 322, 523, 834
AclWI	GGATC	2 cut(s)	17, 425
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	2 cut(s)	151, 695
AcuI	CTGAAG	1 cut(s)	727
AcyI	GRCGYC	2 cut(s)	71, 333
AfaI	GTAC	1 cut(s)	473
AgsI	TTSAA	4 cut(s)	133, 535, 610, 646
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	2 cut(s)	81, 489
AlwI	GGATC	2 cut(s)	17, 425
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	6 cut(s)	118, 215, 285, 426, 649, 831
ApaI	GGGCCC	1 cut(s)	219
ApeKI	GCWGC	4 cut(s)	31, 186, 515, 593
ApoI	RAATTY	2 cut(s)	151, 695
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	3 cut(s)	215, 216, 286
AsuC2I	CCSGG	2 cut(s)	247, 830
AsuHPI	GGTGA	4 cut(s)	4, 187, 370, 629
BaeGI	GKGCMC	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	219, 543
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	4 cut(s)	43, 198, 527, 580
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	2 cut(s)	58, 636
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BcnI	CCSGG	2 cut(s)	247, 830
BcoDI	GTCTC	2 cut(s)	81, 489
BfaI	CTAG	2 cut(s)	735, 852
BfmI	CTRYAG	2 cut(s)	420, 791
BfoI	RGCGCY	1 cut(s)	253
BisI	GCNGC	9 cut(s)	32, 118, 187, 211, 323, 516, 523, 594, 834
BlsI	GCNGC	9 cut(s)	33, 119, 188, 212, 324, 517, 524, 595, 835
Bme1390I	CCNGG	2 cut(s)	247, 830
BmgT120I	GGNCC	3 cut(s)	215, 216, 286
BmiI	GGNNCC	3 cut(s)	217, 218, 665
BmrFI	CCNGG	2 cut(s)	247, 830
BmsI	GCATC	1 cut(s)	35
BpmI	CTGGAG	3 cut(s)	217, 283, 420
BpuEI	CTTGAG	1 cut(s)	786
BpuMI	CCSGG	2 cut(s)	247, 830
BsaHI	GRCGYC	2 cut(s)	71, 333
BsaI	GGTCTC	1 cut(s)	489
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 215, 245
Bse1I	ACTGG	3 cut(s)	300, 387, 437
Bse3DI	GCAATG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	44, 176
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	3 cut(s)	300, 387, 437
BseRI	GAGGAG	2 cut(s)	82, 259
BseSI	GKGCMC	1 cut(s)	219
BseX3I	CGGCCG	1 cut(s)	831
BseXI	GCAGC	4 cut(s)	43, 198, 527, 580
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	1 cut(s)	836
Bsh1285I	CGRYCG	1 cut(s)	834
BshFI	GGCC	6 cut(s)	120, 217, 287, 428, 651, 833
BsiEI	CGRYCG	1 cut(s)	834
BsiHKAI	GWGCWC	1 cut(s)	543
BsiSI	CCGG	2 cut(s)	247, 830
BsmAI	GTCTC	2 cut(s)	81, 489
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	6 cut(s)	120, 217, 287, 428, 651, 833
Bso31I	GGTCTC	1 cut(s)	489
Bsp120I	GGGCCC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	219, 543
Bsp143I	GATC	2 cut(s)	9, 430
BspACI	CCGC	9 cut(s)	80, 96, 117, 198, 210, 213, 322, 523, 834
BspANI	GGCC	6 cut(s)	120, 217, 287, 428, 651, 833
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	3 cut(s)	217, 218, 665
BspMAI	CTGCAG	2 cut(s)	424, 795
BspPI	GGATC	2 cut(s)	17, 425
BspTNI	GGTCTC	1 cut(s)	489
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	3 cut(s)	300, 387, 437
BssMI	GATC	2 cut(s)	9, 430
BssNI	GRCGYC	2 cut(s)	71, 333
Bst4CI	ACNGT	1 cut(s)	319
BstACI	GRCGYC	2 cut(s)	71, 333
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	215, 520, 720
BstDEI	CTNAG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	44, 176
BstFNI	CGCG	1 cut(s)	836
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	12, 433
BstMAI	GTCTC	2 cut(s)	81, 489
BstMBI	GATC	2 cut(s)	9, 430
BstMCI	CGRYCG	1 cut(s)	834
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 79, 165, 392
BstSCI	CCNGG	2 cut(s)	245, 828
BstSFI	CTRYAG	2 cut(s)	420, 791
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	4 cut(s)	43, 198, 527, 580
BstZI	CGGCCG	1 cut(s)	831
BsuRI	GGCC	6 cut(s)	120, 217, 287, 428, 651, 833
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	44, 176
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	3 cut(s)	215, 520, 720
CaiI	CAGNNNCTG	1 cut(s)	141
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	3 cut(s)	215, 216, 286
CseI	GACGC	2 cut(s)	79, 341
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	37, 346, 526, 569
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	2 cut(s)	11, 432
DpnII	GATC	2 cut(s)	9, 430
EaeI	YGGCCR	1 cut(s)	831
EagI	CGGCCG	1 cut(s)	831
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	541
EclXI	CGGCCG	1 cut(s)	831
Eco24I	GRGCYC	2 cut(s)	219, 543
Eco31I	GGTCTC	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	295
Eco52I	CGGCCG	1 cut(s)	831
Eco53kI	GAGCTC	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	727
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	2 cut(s)	216, 286
EcoRV	GATATC	1 cut(s)	295
EcoT38I	GRGCYC	2 cut(s)	219, 543
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	4 cut(s)	40, 349, 529, 572
FaiI	YATR	9 cut(s)	38, 65, 149, 347, 468, 527, 570, 635, 764
FatI	CATG	4 cut(s)	36, 345, 525, 568
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	9 cut(s)	32, 118, 187, 211, 323, 516, 523, 594, 834
FokI	GGATG	2 cut(s)	31, 163
FriOI	GRGCYC	2 cut(s)	219, 543
Fsp4HI	GCNGC	9 cut(s)	32, 118, 187, 211, 323, 516, 523, 594, 834
FspBI	CTAG	2 cut(s)	735, 852
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	9 cut(s)	32, 118, 187, 211, 323, 516, 523, 594, 834
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	3 cut(s)	217, 283, 420
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	6 cut(s)	120, 217, 287, 428, 651, 833
HapII	CCGG	2 cut(s)	247, 830
HgaI	GACGC	2 cut(s)	79, 341
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	2 cut(s)	71, 333
Hin1II	CATG	4 cut(s)	40, 349, 529, 572
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	5 cut(s)	101, 192, 242, 266, 731
HpaII	CCGG	2 cut(s)	247, 830
HphI	GGTGA	4 cut(s)	4, 187, 370, 629
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	2 cut(s)	274, 860
Hpy188III	TCNNGA	5 cut(s)	48, 445, 700, 735, 803
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	3 cut(s)	73, 278, 335
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	4 cut(s)	422, 515, 722, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 79, 165, 392
HpyF3I	CTNAG	1 cut(s)	443
Hsp92I	GRCGYC	2 cut(s)	71, 333
Hsp92II	CATG	4 cut(s)	40, 349, 529, 572
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	9, 430
LmnI	GCTCC	4 cut(s)	143, 173, 538, 715
Lsp1109I	GCAGC	4 cut(s)	43, 198, 527, 580
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	2 cut(s)	735, 852
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	2 cut(s)	11, 432
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	2 cut(s)	9, 430
MboII	GAAGA	3 cut(s)	499, 517, 740
MhlI	GDGCHC	2 cut(s)	219, 543
MluCI	AATT	2 cut(s)	151, 695
MlyI	GAGTC	3 cut(s)	95, 236, 260
MmeI	TCCRAC	2 cut(s)	297, 331
MspI	CCGG	2 cut(s)	247, 830
MspR9I	CCNGG	2 cut(s)	247, 830
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	4 cut(s)	37, 79, 165, 392
NciI	CCSGG	2 cut(s)	247, 830
NdeII	GATC	2 cut(s)	9, 430
NlaIII	CATG	4 cut(s)	40, 349, 529, 572
NlaIV	GGNNCC	3 cut(s)	217, 218, 665
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	192, 731
PflFI	GACNNNGTC	1 cut(s)	73
PkrI	GCNGC	9 cut(s)	33, 119, 188, 212, 324, 517, 524, 595, 835
PleI	GAGTC	3 cut(s)	95, 236, 260
PpsI	GAGTC	3 cut(s)	95, 236, 260
Psp124BI	GAGCTC	1 cut(s)	543
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	217, 218, 665
PspOMI	GGGCCC	1 cut(s)	215
PspPI	GGNCC	3 cut(s)	215, 216, 286
PstI	CTGCAG	2 cut(s)	424, 795
PstNI	CAGNNNCTG	1 cut(s)	141
PsyI	GACNNNGTC	1 cut(s)	73
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SacI	GAGCTC	1 cut(s)	543
SatI	GCNGC	9 cut(s)	32, 118, 187, 211, 323, 516, 523, 594, 834
Sau3AI	GATC	2 cut(s)	9, 430
Sau96I	GGNCC	3 cut(s)	215, 216, 286
SchI	GAGTC	3 cut(s)	95, 236, 260
ScrFI	CCNGG	2 cut(s)	247, 830
SduI	GDGCHC	2 cut(s)	219, 543
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	2 cut(s)	420, 791
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
Sse9I	AATT	2 cut(s)	151, 695
SsiI	CCGC	9 cut(s)	80, 96, 117, 198, 210, 213, 322, 523, 834
SspI	AATATT	2 cut(s)	414, 673
SspMI	CTAG	2 cut(s)	735, 852
SstI	GAGCTC	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	245, 828
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	5 cut(s)	291, 311, 330, 379, 402
TasI	AATT	2 cut(s)	151, 695
TauI	GCSGC	5 cut(s)	120, 213, 325, 525, 836
TfiI	GAWTC	2 cut(s)	192, 731
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	4 cut(s)	31, 186, 515, 593
TspDTI	ATGAA	2 cut(s)	136, 855
TspGWI	ACGGA	3 cut(s)	116, 271, 656
TspRI	CASTG	1 cut(s)	307
Tth111I	GACNNNGTC	1 cut(s)	73
XapI	RAATTY	2 cut(s)	151, 695
XbaI	TCTAGA	1 cut(s)	734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XspI	CTAG	2 cut(s)	735, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.