Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Reverse (-)

620298 .. 623581

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG010400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTGGGATCACCACCAGCTTCGCATCCAAGCCTATCCTATCCCGGACAACTCCCAAAACGACGCCGTTTCCATTCTCACTGTCCTCCTTCGAGTCCAAGCTCTTCGGCCTTCGCTTTAATACCGTTTATCTGATAAATCCGAGCTCTTGTAGCTCTCTCTCCTCCGCCGTCAGCAGCCCAGTCACGGCTCGTTTCGGCGGCGGCGGGCCCCGGAGGTCGAGCAATGACCGCCGGAGACAGCAAAGCGATGCCGAGGATGATGATAAAGCACTTGATATCTCCACTATAAGGTCAGCTTCGGTGAGGCTTATTGATCAGAAGCAGGAAATGGTTGGAGTGGTGTCGAAGAGCGAGGCGATTCGAATGGCTGATGAGGCTGACCTTGATTTGGTAATATTGTCTCCAGATGCAGATCCTCCAGTTCTCAGGATTATGGATTACAATAAATATCGGTATGAGCAACAAAAGAAGAAAAGAGTGTCGCAGAAGAAAAGCGCAGCCAGTCGCATGGATTTGAAGGAGCTCAAAATGGGTTACAACATTGATCAACATGATTATTCTGTACGTATGAGAGCCGCTCAGAAGTTTCTGAAAGATGGTGATAAGGTAGGTTGCTTAAAGTTCTCAAGGAGGGCCTTCTTATATTGTATAAGGATATCAGCGTGTTACACTCTTATTTTTCTTTGCTTTGATATTTATAACCAATTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

238

Amino Acids

26.83

Weight (kDa)

9.55

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_N	PF05198	96 - 160	2.6e-27	Translation initiation factor IF-3, N-terminal domain
IF3_C	PF00707	172 - 205	3.5e-10	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
AccBSI	CCGCTC	1 cut(s)	581
AciI	CCGC	6 cut(s)	168, 201, 204, 207, 232, 579
AclWI	GGATC	2 cut(s)	17, 410
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	3 cut(s)	187, 291, 391
AgsI	TTSAA	1 cut(s)	520
AluBI	AGCT	6 cut(s)	21, 103, 147, 156, 299, 526
AluI	AGCT	6 cut(s)	21, 103, 147, 156, 299, 526
Alw21I	GWGCWC	2 cut(s)	149, 528
Alw26I	GTCTC	2 cut(s)	232, 408
AlwI	GGATC	2 cut(s)	17, 410
AoxI	GGCC	3 cut(s)	109, 209, 636
ApaI	GGGCCC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	177, 500
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	3 cut(s)	209, 210, 636
AsuC2I	CCSGG	2 cut(s)	46, 214
AsuHPI	GGTGA	3 cut(s)	4, 316, 614
AsuII	TTCGAA	1 cut(s)	364
BaeGI	GKGCMC	1 cut(s)	213
BanII	GRGCYC	3 cut(s)	149, 213, 528
Bbv12I	GWGCWC	2 cut(s)	149, 528
BbvI	GCAGC	2 cut(s)	189, 512
BccI	CCATC	1 cut(s)	593
BceAI	ACGGC	3 cut(s)	52, 155, 204
BclI	TGATCA	2 cut(s)	316, 547
BcnI	CCSGG	2 cut(s)	46, 214
BcoDI	GTCTC	2 cut(s)	232, 408
BfmI	CTRYAG	1 cut(s)	713
BisI	GCNGC	5 cut(s)	178, 202, 205, 501, 579
BlsI	GCNGC	5 cut(s)	179, 203, 206, 502, 580
Bme1390I	CCNGG	2 cut(s)	46, 214
BmgT120I	GGNCC	3 cut(s)	209, 210, 636
BmiI	GGNNCC	2 cut(s)	211, 212
BmrFI	CCNGG	2 cut(s)	46, 214
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	3 cut(s)	35, 241, 400
BmuI	ACTGGG	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	565, 597
BpmI	CTGGAG	2 cut(s)	390, 405
Bpu14I	TTCGAA	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	613
BpuMI	CCSGG	2 cut(s)	46, 214
BsaAI	YACGTR	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	212, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 291, 391
Bse1I	ACTGG	3 cut(s)	182, 422, 504
Bse3DI	GCAATG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	212, 255
BseGI	GGATG	2 cut(s)	26, 265
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	3 cut(s)	187, 291, 391
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	442, 596
BseNI	ACTGG	3 cut(s)	182, 422, 504
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	189, 512
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	3 cut(s)	111, 211, 638
BsiHKAI	GWGCWC	2 cut(s)	149, 528
BsiSI	CCGG	3 cut(s)	46, 214, 235
BslI	CCNNNNNNNGG	3 cut(s)	187, 291, 391
BsmAI	GTCTC	2 cut(s)	232, 408
BsnI	GGCC	3 cut(s)	111, 211, 638
Bsp119I	TTCGAA	1 cut(s)	364
Bsp120I	GGGCCC	1 cut(s)	209
Bsp1286I	GDGCHC	3 cut(s)	149, 213, 528
Bsp143I	GATC	4 cut(s)	9, 316, 415, 547
BspACI	CCGC	6 cut(s)	168, 201, 204, 207, 232, 579
BspANI	GGCC	3 cut(s)	111, 211, 638
BspCNI	CTCAG	2 cut(s)	441, 595
BspLI	GGNNCC	2 cut(s)	211, 212
BspPI	GGATC	2 cut(s)	17, 410
BspQI	GCTCTTC	2 cut(s)	110, 344
BspT104I	TTCGAA	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	3 cut(s)	182, 422, 504
BssECI	CCNNGG	2 cut(s)	212, 255
BssMI	GATC	4 cut(s)	9, 316, 415, 547
BssNI	GRCGYC	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	84, 127
Bst6I	CTCTTC	2 cut(s)	110, 344
BstACI	GRCGYC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	428, 582
BstF5I	GGATG	2 cut(s)	26, 265
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	4 cut(s)	12, 319, 418, 550
BstMAI	GTCTC	2 cut(s)	232, 408
BstMBI	GATC	4 cut(s)	9, 316, 415, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 231, 377
BstSCI	CCNGG	2 cut(s)	44, 212
BstSFI	CTRYAG	1 cut(s)	713
BstSLI	GKGCMC	1 cut(s)	213
BstSNI	TACGTA	1 cut(s)	569
BstV1I	GCAGC	2 cut(s)	189, 512
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	111, 211, 638
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	26, 265
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	1 cut(s)	500
Cfr13I	GGNCC	3 cut(s)	209, 210, 636
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	2 cut(s)	511, 554
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	2 cut(s)	428, 582
DpnI	GATC	4 cut(s)	11, 318, 417, 549
DpnII	GATC	4 cut(s)	9, 316, 415, 547
Eam1104I	CTCTTC	2 cut(s)	110, 344
EarI	CTCTTC	2 cut(s)	110, 344
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	2 cut(s)	147, 526
Eco105I	TACGTA	1 cut(s)	569
Eco24I	GRGCYC	3 cut(s)	149, 213, 528
Eco32I	GATATC	2 cut(s)	280, 660
Eco53kI	GAGCTC	2 cut(s)	147, 526
EcoICRI	GAGCTC	2 cut(s)	147, 526
EcoO109I	RGGNCCY	2 cut(s)	210, 636
EcoRV	GATATC	2 cut(s)	280, 660
EcoT38I	GRGCYC	3 cut(s)	149, 213, 528
FaeI	CATG	2 cut(s)	514, 557
FaiI	YATR	9 cut(s)	290, 437, 459, 512, 555, 572, 646, 653, 702
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FatI	CATG	2 cut(s)	510, 553
FauI	CCCGC	1 cut(s)	200
FbaI	TGATCA	2 cut(s)	316, 547
Fnu4HI	GCNGC	5 cut(s)	178, 202, 205, 501, 579
FokI	GGATG	2 cut(s)	13, 272
FriOI	GRGCYC	3 cut(s)	149, 213, 528
Fsp4HI	GCNGC	5 cut(s)	178, 202, 205, 501, 579
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	5 cut(s)	178, 202, 205, 501, 579
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	2 cut(s)	390, 405
HaeIII	GGCC	3 cut(s)	111, 211, 638
HapII	CCGG	3 cut(s)	46, 214, 235
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	500
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	514, 557
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HinfI	GANTC	2 cut(s)	95, 361
HpaII	CCGG	3 cut(s)	46, 214, 235
HphI	GGTGA	3 cut(s)	4, 316, 614
Hpy188I	TCNGA	5 cut(s)	135, 144, 321, 585, 594
Hpy188III	TCNNGA	2 cut(s)	407, 430
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	4 cut(s)	100, 122, 514, 649
HpyCH4III	ACNGT	2 cut(s)	84, 127
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 231, 377
HpyF3I	CTNAG	2 cut(s)	428, 582
HpySE526I	ACGT	1 cut(s)	568
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	514, 557
HspAI	GCGC	1 cut(s)	498
Ksp22I	TGATCA	2 cut(s)	316, 547
Kzo9I	GATC	4 cut(s)	9, 316, 415, 547
LguI	GCTCTTC	2 cut(s)	110, 344
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	2 cut(s)	189, 512
LweI	GCATC	3 cut(s)	35, 241, 400
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	3 cut(s)	184, 536, 668
MalI	GATC	4 cut(s)	11, 318, 417, 549
MbiI	CCGCTC	1 cut(s)	581
MboI	GATC	4 cut(s)	9, 316, 415, 547
MboII	GAAGA	4 cut(s)	97, 361, 484, 502
MfeI	CAATTG	1 cut(s)	707
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	3 cut(s)	149, 213, 528
MluCI	AATT	1 cut(s)	707
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	9 cut(s)	97, 175, 210, 250, 300, 349, 370, 429, 627
MseI	TTAA	2 cut(s)	120, 620
MspI	CCGG	3 cut(s)	46, 214, 235
MspR9I	CCNGG	2 cut(s)	46, 214
MunI	CAATTG	1 cut(s)	707
MwoI	GCNNNNNNNGC	3 cut(s)	153, 231, 377
NciI	CCSGG	2 cut(s)	46, 214
NdeII	GATC	4 cut(s)	9, 316, 415, 547
NlaIII	CATG	2 cut(s)	514, 557
NlaIV	GGNNCC	2 cut(s)	211, 212
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	364
PciSI	GCTCTTC	2 cut(s)	110, 344
PfeI	GAWTC	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	44
PkrI	GCNGC	5 cut(s)	179, 203, 206, 502, 580
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	702
Psp124BI	GAGCTC	2 cut(s)	149, 528
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	211, 212
PspOMI	GGGCCC	1 cut(s)	209
PspPI	GGNCC	3 cut(s)	209, 210, 636
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
SacI	GAGCTC	2 cut(s)	149, 528
SapI	GCTCTTC	2 cut(s)	110, 344
SaqAI	TTAA	2 cut(s)	120, 620
SatI	GCNGC	5 cut(s)	178, 202, 205, 501, 579
Sau3AI	GATC	4 cut(s)	9, 316, 415, 547
Sau96I	GGNCC	3 cut(s)	209, 210, 636
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	46, 214
SduI	GDGCHC	3 cut(s)	149, 213, 528
SfaNI	GCATC	3 cut(s)	35, 241, 400
SfcI	CTRYAG	1 cut(s)	713
SfuI	TTCGAA	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
SnaBI	TACGTA	1 cut(s)	569
Sse9I	AATT	1 cut(s)	707
SsiI	CCGC	6 cut(s)	168, 201, 204, 207, 232, 579
SspI	AATATT	1 cut(s)	399
SstI	GAGCTC	2 cut(s)	149, 528
StyD4I	CCNGG	2 cut(s)	44, 212
TaaI	ACNGT	2 cut(s)	84, 127
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	4 cut(s)	93, 221, 347, 364
TasI	AATT	1 cut(s)	707
TauI	GCSGC	3 cut(s)	204, 207, 581
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	2 cut(s)	120, 620
Tru9I	TTAA	2 cut(s)	120, 620
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	177, 500
Tsp45I	GTSAC	1 cut(s)	184
TspRI	CASTG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.