Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008510

Physical Location & Seq

Genomic Coordinates Reverse (-)

863512 .. 866765

Gene Structure 3254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46096

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTGGGATCACCACCAGCTTCGCATCCAAGCCTATCCTATCCCGGACAACTCCCAAAACGACGCCGTTTCCATTCTCACTGTCCTCCTCCTTCGAGTCCAAGCTCTTCGGCCTTCGCTTTAATACCGTTTATCTGATAAATCCGAGCTCTTGTAGCTCTCTCTCCTCCGCCGTCAGCAGCCCAGTCACGGCTCGTTTCGGCGGCGGCGGGCCCCGGAGGTCGAGCAATGACCGCCGGAGACAGCAAAGCGATGCCGAGGATGATGATAAAGCACTTGATATCTCCACTATAAGGTCAGCTTCGGTGAGGCTTATTGATCAGAAGCAGGAAATGGTTGGAGTGGTATCGAAGAGCGAGGCGATTCGAATGGCTGATGAGGCTGACCTTGATTTGGTAATATTGTCTCCAGATGCAGATCCTCCAGTTCTCAGGATTATGGATTACAATAAATATCGGTATGAGCAACAAAAGAAGAAAAGAGTGTCGCAGAAGAAAAGCGCAGCCAGTCGCATGGATTTGAAGGAGCTCAAAATGGGTTACAACATTGATCAACATGATTATTCTGTACGTATGAGAGCCGCTCAGAAGTTTCTGAAAGATGGTGATAAGGTCAAGGTTATGGTCAACTTGAAAGGTCGGGAAAATGAGTTCCGAAATAAAGCTATCGAGCTTCTCAAACGCTTTCAAAGTGAAGTTGGGGAGCTTGCAACAGAGGAAGCCAAAAGCTTCAGCGACAGAAACATGTTTATAGTTTTAGTTCCAAACAAGGCTATTCTCCAGAAAGCTCAAGAGCCGTCAAAGAAAAAGGAGAACCCTGCAGTGAATGAAGTATCATCAAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0030312 GO:0032501 GO:0032502 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

282

Amino Acids

31.57

Weight (kDa)

9.64

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_N	PF05198	97 - 161	3.6e-27	Translation initiation factor IF-3, N-terminal domain
IF3_C	PF00707	173 - 256	1.5e-24	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24060 AT4G30690 AT4G30690
fragaria_vesca	FvH4_1g00690 FvH4_1g00690 FvH4_1g00690
malus_domestica	MD02G1005700.v1.1 MD15G1150400.v1.1
prunus_persica	Prupe.7G265300_v2.0.a1 Prupe.7G265300_v2.0.a1
pyrus_communis	pycom02g00460 pycom15g13450
rosa_chinensis	RchiOBHm_Chr2g0085411
rosa_laevigata	RLG00000015684
rosa_multiflora	Rmu_co8289399.1_g000001 Rmu_sc0004926.1_g000016
rosa_roxburghii	Rroxscaffold_2G00155400
rosa_rugosa	Rorug01G0460200
rosa_samantha	Rh2AG008300 Rh2BG009600 Rh2CG010100 Rh2DG010400
rosa_wichuraiana	Rw2G000810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	584
AciI	CCGC	6 cut(s)	171, 204, 207, 210, 235, 582
AclWI	GGATC	2 cut(s)	17, 413
AcuI	CTGAAG	1 cut(s)	715
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	3 cut(s)	190, 294, 394
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	3 cut(s)	523, 634, 689
AloI	GAACNNNNNNTCC	2 cut(s)	635, 667
Alw21I	GWGCWC	2 cut(s)	152, 531
Alw26I	GTCTC	2 cut(s)	235, 411
AlwI	GGATC	2 cut(s)	17, 413
AoxI	GGCC	2 cut(s)	112, 212
ApaI	GGGCCC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	180, 503
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	212, 213
AsuC2I	CCSGG	2 cut(s)	46, 217
AsuHPI	GGTGA	3 cut(s)	4, 319, 617
AsuII	TTCGAA	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	216
BanII	GRGCYC	3 cut(s)	152, 216, 531
Bbv12I	GWGCWC	2 cut(s)	152, 531
BbvI	GCAGC	2 cut(s)	192, 515
BccI	CCATC	1 cut(s)	596
BceAI	ACGGC	4 cut(s)	52, 158, 207, 781
BclI	TGATCA	2 cut(s)	319, 550
BcnI	CCSGG	2 cut(s)	46, 217
BcoDI	GTCTC	2 cut(s)	235, 411
BfmI	CTRYAG	1 cut(s)	819
BisI	GCNGC	5 cut(s)	181, 205, 208, 504, 582
BlsI	GCNGC	5 cut(s)	182, 206, 209, 505, 583
Bme1390I	CCNGG	2 cut(s)	46, 217
BmgT120I	GGNCC	2 cut(s)	212, 213
BmiI	GGNNCC	2 cut(s)	214, 215
BmrFI	CCNGG	2 cut(s)	46, 217
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	3 cut(s)	35, 244, 403
BmuI	ACTGGG	1 cut(s)	179
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
BpmI	CTGGAG	3 cut(s)	393, 408, 764
Bpu14I	TTCGAA	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	774
BpuMI	CCSGG	2 cut(s)	46, 217
BsaAI	YACGTR	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	215, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 294, 394
Bse1I	ACTGG	3 cut(s)	185, 425, 507
Bse3DI	GCAATG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	215, 258
BseGI	GGATG	2 cut(s)	26, 268
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	3 cut(s)	190, 294, 394
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	445, 599
BseNI	ACTGG	3 cut(s)	185, 425, 507
BseRI	GAGGAG	2 cut(s)	79, 157
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	192, 515
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	2 cut(s)	114, 214
BsiHKAI	GWGCWC	2 cut(s)	152, 531
BsiSI	CCGG	3 cut(s)	46, 217, 238
BslI	CCNNNNNNNGG	3 cut(s)	190, 294, 394
BsmAI	GTCTC	2 cut(s)	235, 411
BsnI	GGCC	2 cut(s)	114, 214
Bsp119I	TTCGAA	1 cut(s)	367
Bsp120I	GGGCCC	1 cut(s)	212
Bsp1286I	GDGCHC	3 cut(s)	152, 216, 531
Bsp143I	GATC	4 cut(s)	9, 319, 418, 550
BspACI	CCGC	6 cut(s)	171, 204, 207, 210, 235, 582
BspANI	GGCC	2 cut(s)	114, 214
BspCNI	CTCAG	2 cut(s)	444, 598
BspLI	GGNNCC	2 cut(s)	214, 215
BspMAI	CTGCAG	1 cut(s)	823
BspPI	GGATC	2 cut(s)	17, 413
BspQI	GCTCTTC	2 cut(s)	113, 347
BspT104I	TTCGAA	1 cut(s)	367
BsrBI	CCGCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	3 cut(s)	185, 425, 507
BssECI	CCNNGG	2 cut(s)	215, 258
BssMI	GATC	4 cut(s)	9, 319, 418, 550
BssNI	GRCGYC	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	84, 130
Bst6I	CTCTTC	2 cut(s)	113, 347
BstACI	GRCGYC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	212, 708
BstDEI	CTNAG	2 cut(s)	431, 585
BstF5I	GGATG	2 cut(s)	26, 268
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	4 cut(s)	12, 322, 421, 553
BstMAI	GTCTC	2 cut(s)	235, 411
BstMBI	GATC	4 cut(s)	9, 319, 418, 550
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 234, 380
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	2 cut(s)	44, 215
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	216
BstSNI	TACGTA	1 cut(s)	572
BstV1I	GCAGC	2 cut(s)	192, 515
BstX2I	RGATCY	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	114, 214
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	26, 268
BtsI	GCAGTG	1 cut(s)	828
BtsIMutI	CAGTG	2 cut(s)	80, 828
Cac8I	GCNNGC	2 cut(s)	212, 708
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	2 cut(s)	212, 213
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	3 cut(s)	514, 557, 745
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	2 cut(s)	431, 585
DpnI	GATC	4 cut(s)	11, 321, 420, 552
DpnII	GATC	4 cut(s)	9, 319, 418, 550
Eam1104I	CTCTTC	2 cut(s)	113, 347
EarI	CTCTTC	2 cut(s)	113, 347
EciI	GGCGGA	1 cut(s)	160
Ecl136II	GAGCTC	2 cut(s)	150, 529
Eco105I	TACGTA	1 cut(s)	572
Eco24I	GRGCYC	3 cut(s)	152, 216, 531
Eco32I	GATATC	1 cut(s)	283
Eco53kI	GAGCTC	2 cut(s)	150, 529
Eco57I	CTGAAG	1 cut(s)	715
EcoICRI	GAGCTC	2 cut(s)	150, 529
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	283
EcoT38I	GRGCYC	3 cut(s)	152, 216, 531
FaeI	CATG	3 cut(s)	517, 560, 748
FaiI	YATR	9 cut(s)	293, 440, 462, 515, 558, 575, 623, 746, 752
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FatI	CATG	3 cut(s)	513, 556, 744
FauI	CCCGC	1 cut(s)	203
FbaI	TGATCA	2 cut(s)	319, 550
Fnu4HI	GCNGC	5 cut(s)	181, 205, 208, 504, 582
FokI	GGATG	2 cut(s)	13, 275
FriOI	GRGCYC	3 cut(s)	152, 216, 531
Fsp4HI	GCNGC	5 cut(s)	181, 205, 208, 504, 582
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	5 cut(s)	181, 205, 208, 504, 582
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	3 cut(s)	393, 408, 764
HaeIII	GGCC	2 cut(s)	114, 214
HapII	CCGG	3 cut(s)	46, 217, 238
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	517, 560, 748
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	2 cut(s)	98, 364
HpaII	CCGG	3 cut(s)	46, 217, 238
HphI	GGTGA	3 cut(s)	4, 319, 617
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	7 cut(s)	138, 147, 324, 588, 597, 656, 848
Hpy188III	TCNNGA	5 cut(s)	410, 433, 641, 781, 791
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	103, 125, 517
HpyCH4III	ACNGT	2 cut(s)	84, 130
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	3 cut(s)	416, 710, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 234, 380
HpyF3I	CTNAG	2 cut(s)	431, 585
HpySE526I	ACGT	1 cut(s)	571
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	517, 560, 748
HspAI	GCGC	1 cut(s)	501
Ksp22I	TGATCA	2 cut(s)	319, 550
Kzo9I	GATC	4 cut(s)	9, 319, 418, 550
LguI	GCTCTTC	2 cut(s)	113, 347
LmnI	GCTCC	2 cut(s)	526, 703
Lsp1109I	GCAGC	2 cut(s)	192, 515
LweI	GCATC	3 cut(s)	35, 244, 403
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	2 cut(s)	187, 539
MalI	GATC	4 cut(s)	11, 321, 420, 552
MbiI	CCGCTC	1 cut(s)	584
MboI	GATC	4 cut(s)	9, 319, 418, 550
MboII	GAAGA	4 cut(s)	100, 364, 487, 505
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	3 cut(s)	152, 216, 531
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	319
MseI	TTAA	1 cut(s)	123
MspI	CCGG	3 cut(s)	46, 217, 238
MspR9I	CCNGG	2 cut(s)	46, 217
MwoI	GCNNNNNNNGC	3 cut(s)	156, 234, 380
NciI	CCSGG	2 cut(s)	46, 217
NdeII	GATC	4 cut(s)	9, 319, 418, 550
NlaIII	CATG	3 cut(s)	517, 560, 748
NlaIV	GGNNCC	2 cut(s)	214, 215
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	748
NspV	TTCGAA	1 cut(s)	367
PciI	ACATGT	1 cut(s)	744
PciSI	GCTCTTC	2 cut(s)	113, 347
PfeI	GAWTC	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	44
PkrI	GCNGC	5 cut(s)	182, 206, 209, 505, 583
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	572
PscI	ACATGT	1 cut(s)	744
Psp124BI	GAGCTC	2 cut(s)	152, 531
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	214, 215
PspOMI	GGGCCC	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	212, 213
PstI	CTGCAG	1 cut(s)	823
PsuI	RGATCY	1 cut(s)	418
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SacI	GAGCTC	2 cut(s)	152, 531
SapI	GCTCTTC	2 cut(s)	113, 347
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	5 cut(s)	181, 205, 208, 504, 582
Sau3AI	GATC	4 cut(s)	9, 319, 418, 550
Sau96I	GGNCC	2 cut(s)	212, 213
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	46, 217
SduI	GDGCHC	3 cut(s)	152, 216, 531
SfaNI	GCATC	3 cut(s)	35, 244, 403
SfcI	CTRYAG	1 cut(s)	819
SfuI	TTCGAA	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	789
SmoI	CTYRAG	1 cut(s)	789
SnaBI	TACGTA	1 cut(s)	572
SsiI	CCGC	6 cut(s)	171, 204, 207, 210, 235, 582
SspI	AATATT	1 cut(s)	402
SstI	GAGCTC	2 cut(s)	152, 531
StyD4I	CCNGG	2 cut(s)	44, 215
TaaI	ACNGT	2 cut(s)	84, 130
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	5 cut(s)	96, 224, 350, 367, 669
TauI	GCSGC	3 cut(s)	207, 210, 584
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	87, 828
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	180, 503
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	843
TspRI	CASTG	2 cut(s)	87, 828
XceI	RCATGY	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.