Basic helix-loop-helix
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24260 AT2G24260 |
| fragaria_vesca | FvH4_1g01110 FvH4_1g01110 |
| malus_domestica | MD02G1009200.v1.1 MD15G1154600.v1.1 |
| prunus_persica | Prupe.2G080600_v2.0.a1 Prupe.5G043700_v2.0.a1 Prupe.7G260800_v2.0.a1 Prupe.7G260800_v2.0.a1 |
| pyrus_communis | pycom02g00820 pycom15g13820 |
| rosa_chinensis | RchiOBHm_Chr2g0085911 |
| rosa_laevigata | RLG00000015726 |
| rosa_multiflora | Rmu_sc0001748.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00154940 |
| rosa_rugosa | Rorug01G0464300 |
| rosa_samantha | Rh2AG013200 Rh2BG013900 Rh2CG014400 Rh2DG015700 |
| rosa_wichuraiana | Rw2G001180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 243 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 940, 1003 |
| AatII | GACGTC | 1 cut(s) | 900 |
| AccI | GTMKAC | 3 cut(s) | 177, 362, 944 |
| AccII | CGCG | 1 cut(s) | 359 |
| AciI | CCGC | 9 cut(s) | 386, 392, 395, 482, 681, 693, 837, 849, 966 |
| AclWI | GGATC | 6 cut(s) | 271, 301, 434, 654, 667, 871 |
| AcoI | YGGCCR | 4 cut(s) | 166, 705, 750, 780 |
| AcvI | CACGTG | 1 cut(s) | 855 |
| AcyI | GRCGYC | 1 cut(s) | 897 |
| AfaI | GTAC | 3 cut(s) | 379, 597, 952 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 155, 592 |
| AflIII | ACRYGT | 1 cut(s) | 854 |
| AgsI | TTSAA | 4 cut(s) | 214, 281, 503, 797 |
| AjnI | CCWGG | 1 cut(s) | 880 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 662, 694 |
| AluBI | AGCT | 4 cut(s) | 368, 419, 497, 887 |
| AluI | AGCT | 4 cut(s) | 368, 419, 497, 887 |
| Alw26I | GTCTC | 1 cut(s) | 818 |
| AlwI | GGATC | 6 cut(s) | 271, 301, 434, 654, 667, 871 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 371 |
| AoxI | GGCC | 7 cut(s) | 108, 116, 166, 705, 750, 780, 1029 |
| ApeKI | GCWGC | 1 cut(s) | 623 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 510 |
| AspLEI | GCGC | 1 cut(s) | 359 |
| AspS9I | GGNCC | 3 cut(s) | 109, 117, 905 |
| AsuII | TTCGAA | 1 cut(s) | 1043 |
| AvaII | GGWCC | 1 cut(s) | 905 |
| AxyI | CCTNAGG | 2 cut(s) | 288, 348 |
| BalI | TGGCCA | 1 cut(s) | 752 |
| BamHI | GGATCC | 1 cut(s) | 659 |
| BanII | GRGCYC | 1 cut(s) | 779 |
| BbrPI | CACGTG | 1 cut(s) | 855 |
| BbsI | GAAGAC | 3 cut(s) | 87, 774, 1002 |
| BbvI | GCAGC | 1 cut(s) | 610 |
| BccI | CCATC | 4 cut(s) | 67, 149, 212, 848 |
| BceAI | ACGGC | 6 cut(s) | 181, 535, 720, 1004, 1006, 1016 |
| BciT130I | CCWGG | 1 cut(s) | 882 |
| BciVI | GTATCC | 1 cut(s) | 1045 |
| BcoDI | GTCTC | 1 cut(s) | 818 |
| BfaI | CTAG | 1 cut(s) | 420 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BfuI | GTATCC | 1 cut(s) | 1045 |
| BisI | GCNGC | 3 cut(s) | 387, 395, 624 |
| BlsI | GCNGC | 3 cut(s) | 388, 396, 625 |
| Bme1390I | CCNGG | 1 cut(s) | 882 |
| Bme18I | GGWCC | 1 cut(s) | 905 |
| BmgT120I | GGNCC | 3 cut(s) | 109, 117, 905 |
| BmiI | GGNNCC | 4 cut(s) | 111, 223, 390, 661 |
| BmrFI | CCNGG | 1 cut(s) | 882 |
| BmsI | GCATC | 5 cut(s) | 124, 195, 534, 548, 683 |
| BpiI | GAAGAC | 3 cut(s) | 87, 774, 1002 |
| BpmI | CTGGAG | 1 cut(s) | 903 |
| Bpu14I | TTCGAA | 1 cut(s) | 1043 |
| BpuEI | CTTGAG | 1 cut(s) | 166 |
| Bsa29I | ATCGAT | 1 cut(s) | 542 |
| BsaAI | YACGTR | 1 cut(s) | 855 |
| BsaBI | GATNNNNATC | 1 cut(s) | 138 |
| BsaHI | GRCGYC | 1 cut(s) | 897 |
| BsaJI | CCNNGG | 7 cut(s) | 105, 113, 163, 648, 664, 684, 880 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 662, 692 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 155, 592 |
| Bse1I | ACTGG | 1 cut(s) | 376 |
| Bse21I | CCTNAGG | 2 cut(s) | 288, 348 |
| Bse8I | GATNNNNATC | 1 cut(s) | 138 |
| BseBI | CCWGG | 1 cut(s) | 882 |
| BseCI | ATCGAT | 1 cut(s) | 542 |
| BseDI | CCNNGG | 7 cut(s) | 105, 113, 163, 648, 664, 684, 880 |
| BseGI | GGATG | 2 cut(s) | 139, 674 |
| BseJI | GATNNNNATC | 1 cut(s) | 138 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 155, 592 |
| BseMII | CTCAG | 3 cut(s) | 302, 362, 590 |
| BseNI | ACTGG | 1 cut(s) | 376 |
| BseRI | GAGGAG | 2 cut(s) | 214, 315 |
| BseX3I | CGGCCG | 1 cut(s) | 705 |
| BseXI | GCAGC | 1 cut(s) | 610 |
| Bsh1236I | CGCG | 1 cut(s) | 359 |
| Bsh1285I | CGRYCG | 1 cut(s) | 708 |
| BshFI | GGCC | 7 cut(s) | 110, 118, 168, 707, 752, 782, 1031 |
| BshVI | ATCGAT | 1 cut(s) | 542 |
| BsiEI | CGRYCG | 1 cut(s) | 708 |
| BsiSI | CCGG | 2 cut(s) | 261, 708 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 155, 592 |
| BsmAI | GTCTC | 1 cut(s) | 818 |
| BsnI | GGCC | 7 cut(s) | 110, 118, 168, 707, 752, 782, 1031 |
| Bsp119I | TTCGAA | 1 cut(s) | 1043 |
| Bsp1286I | GDGCHC | 1 cut(s) | 779 |
| Bsp143I | GATC | 8 cut(s) | 91, 195, 263, 293, 439, 555, 659, 876 |
| Bsp19I | CCATGG | 1 cut(s) | 684 |
| BspACI | CCGC | 9 cut(s) | 386, 392, 395, 482, 681, 693, 837, 849, 966 |
| BspANI | GGCC | 7 cut(s) | 110, 118, 168, 707, 752, 782, 1031 |
| BspCNI | CTCAG | 3 cut(s) | 301, 361, 591 |
| BspDI | ATCGAT | 1 cut(s) | 542 |
| BspFNI | CGCG | 1 cut(s) | 359 |
| BspHI | TCATGA | 1 cut(s) | 198 |
| BspLI | GGNNCC | 4 cut(s) | 111, 223, 390, 661 |
| BspPI | GGATC | 6 cut(s) | 271, 301, 434, 654, 667, 871 |
| BspQI | GCTCTTC | 1 cut(s) | 504 |
| BspT104I | TTCGAA | 1 cut(s) | 1043 |
| BsrI | ACTGG | 1 cut(s) | 376 |
| BssECI | CCNNGG | 7 cut(s) | 105, 113, 163, 648, 664, 684, 880 |
| BssMI | GATC | 8 cut(s) | 91, 195, 263, 293, 439, 555, 659, 876 |
| BssNI | GRCGYC | 1 cut(s) | 897 |
| BssT1I | CCWWGG | 1 cut(s) | 684 |
| Bst2UI | CCWGG | 1 cut(s) | 882 |
| Bst4CI | ACNGT | 3 cut(s) | 382, 942, 986 |
| Bst6I | CTCTTC | 6 cut(s) | 16, 21, 150, 273, 463, 504 |
| BstACI | GRCGYC | 1 cut(s) | 897 |
| BstBAI | YACGTR | 1 cut(s) | 855 |
| BstBI | TTCGAA | 1 cut(s) | 1043 |
| BstC8I | GCNNGC | 1 cut(s) | 355 |
| BstDEI | CTNAG | 3 cut(s) | 288, 348, 599 |
| BstDSI | CCRYGG | 4 cut(s) | 113, 163, 664, 684 |
| BstF5I | GGATG | 2 cut(s) | 139, 674 |
| BstFNI | CGCG | 1 cut(s) | 359 |
| BstHHI | GCGC | 1 cut(s) | 359 |
| BstKTI | GATC | 8 cut(s) | 94, 198, 266, 296, 442, 558, 662, 879 |
| BstMAI | GTCTC | 1 cut(s) | 818 |
| BstMBI | GATC | 8 cut(s) | 91, 195, 263, 293, 439, 555, 659, 876 |
| BstMCI | CGRYCG | 1 cut(s) | 708 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 165, 365, 680 |
| BstNI | CCWGG | 1 cut(s) | 882 |
| BstSCI | CCNGG | 1 cut(s) | 880 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstUI | CGCG | 1 cut(s) | 359 |
| BstV1I | GCAGC | 1 cut(s) | 610 |
| BstV2I | GAAGAC | 3 cut(s) | 87, 774, 1002 |
| BstX2I | RGATCY | 2 cut(s) | 263, 659 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 760 |
| BstYI | RGATCY | 2 cut(s) | 263, 659 |
| BstZI | CGGCCG | 1 cut(s) | 705 |
| Bsu15I | ATCGAT | 1 cut(s) | 542 |
| Bsu36I | CCTNAGG | 2 cut(s) | 288, 348 |
| BsuI | GTATCC | 1 cut(s) | 1045 |
| BsuRI | GGCC | 7 cut(s) | 110, 118, 168, 707, 752, 782, 1031 |
| BsuTUI | ATCGAT | 1 cut(s) | 542 |
| BtgI | CCRYGG | 4 cut(s) | 113, 163, 664, 684 |
| BtsCI | GGATG | 2 cut(s) | 139, 674 |
| Cac8I | GCNNGC | 1 cut(s) | 355 |
| CaiI | CAGNNNCTG | 1 cut(s) | 371 |
| CciI | TCATGA | 1 cut(s) | 198 |
| CfoI | GCGC | 1 cut(s) | 359 |
| Cfr13I | GGNCC | 3 cut(s) | 109, 117, 905 |
| ClaI | ATCGAT | 1 cut(s) | 542 |
| CseI | GACGC | 1 cut(s) | 348 |
| Csp6I | GTAC | 3 cut(s) | 378, 596, 951 |
| CviAII | CATG | 7 cut(s) | 199, 604, 685, 772, 784, 817, 931 |
| CviQI | GTAC | 3 cut(s) | 378, 596, 951 |
| DdeI | CTNAG | 3 cut(s) | 288, 348, 599 |
| DpnI | GATC | 8 cut(s) | 93, 197, 265, 295, 441, 557, 661, 878 |
| DpnII | GATC | 8 cut(s) | 91, 195, 263, 293, 439, 555, 659, 876 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 940, 1003 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 940, 1003 |
| EaeI | YGGCCR | 4 cut(s) | 166, 705, 750, 780 |
| EagI | CGGCCG | 1 cut(s) | 705 |
| Eam1104I | CTCTTC | 6 cut(s) | 16, 21, 150, 273, 463, 504 |
| EarI | CTCTTC | 6 cut(s) | 16, 21, 150, 273, 463, 504 |
| EciI | GGCGGA | 2 cut(s) | 381, 670 |
| EclXI | CGGCCG | 1 cut(s) | 705 |
| Eco130I | CCWWGG | 1 cut(s) | 684 |
| Eco24I | GRGCYC | 1 cut(s) | 779 |
| Eco47I | GGWCC | 1 cut(s) | 905 |
| Eco52I | CGGCCG | 1 cut(s) | 705 |
| Eco72I | CACGTG | 1 cut(s) | 855 |
| Eco81I | CCTNAGG | 2 cut(s) | 288, 348 |
| EcoO109I | RGGNCCY | 1 cut(s) | 905 |
| EcoRII | CCWGG | 1 cut(s) | 880 |
| EcoT14I | CCWWGG | 1 cut(s) | 684 |
| EcoT38I | GRGCYC | 1 cut(s) | 779 |
| ErhI | CCWWGG | 1 cut(s) | 684 |
| FaeI | CATG | 7 cut(s) | 202, 607, 688, 775, 787, 820, 934 |
| FatI | CATG | 7 cut(s) | 198, 603, 684, 771, 783, 816, 930 |
| FblI | GTMKAC | 3 cut(s) | 177, 362, 944 |
| Fnu4HI | GCNGC | 3 cut(s) | 387, 395, 624 |
| FokI | GGATG | 2 cut(s) | 126, 661 |
| FriOI | GRGCYC | 1 cut(s) | 779 |
| Fsp4HI | GCNGC | 3 cut(s) | 387, 395, 624 |
| FspBI | CTAG | 1 cut(s) | 420 |
| GlaI | GCGC | 1 cut(s) | 358 |
| GluI | GCNGC | 3 cut(s) | 387, 395, 624 |
| GsuI | CTGGAG | 1 cut(s) | 903 |
| HaeIII | GGCC | 7 cut(s) | 110, 118, 168, 707, 752, 782, 1031 |
| HapII | CCGG | 2 cut(s) | 261, 708 |
| HgaI | GACGC | 1 cut(s) | 348 |
| HhaI | GCGC | 1 cut(s) | 359 |
| Hin1I | GRCGYC | 1 cut(s) | 897 |
| Hin1II | CATG | 7 cut(s) | 202, 607, 688, 775, 787, 820, 934 |
| Hin6I | GCGC | 1 cut(s) | 357 |
| HinP1I | GCGC | 1 cut(s) | 357 |
| HincII | GTYRAC | 2 cut(s) | 178, 945 |
| HindII | GTYRAC | 2 cut(s) | 178, 945 |
| HinfI | GANTC | 2 cut(s) | 179, 187 |
| HpaII | CCGG | 2 cut(s) | 261, 708 |
| Hpy166II | GTNNAC | 4 cut(s) | 178, 232, 363, 945 |
| Hpy188I | TCNGA | 4 cut(s) | 154, 416, 649, 902 |
| Hpy188III | TCNNGA | 3 cut(s) | 199, 297, 503 |
| Hpy8I | GTNNAC | 4 cut(s) | 178, 232, 363, 945 |
| Hpy99I | CGWCG | 6 cut(s) | 128, 131, 260, 899, 902, 949 |
| HpyAV | CCTTC | 2 cut(s) | 36, 918 |
| HpyCH4III | ACNGT | 3 cut(s) | 382, 942, 986 |
| HpyCH4IV | ACGT | 2 cut(s) | 854, 897 |
| HpyCH4V | TGCA | 1 cut(s) | 787 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 165, 365, 680 |
| HpyF3I | CTNAG | 3 cut(s) | 288, 348, 599 |
| HpySE526I | ACGT | 2 cut(s) | 854, 897 |
| Hsp92I | GRCGYC | 1 cut(s) | 897 |
| Hsp92II | CATG | 7 cut(s) | 202, 607, 688, 775, 787, 820, 934 |
| HspAI | GCGC | 1 cut(s) | 357 |
| Kzo9I | GATC | 8 cut(s) | 91, 195, 263, 293, 439, 555, 659, 876 |
| LguI | GCTCTTC | 1 cut(s) | 504 |
| LmnI | GCTCC | 3 cut(s) | 227, 394, 884 |
| Lsp1109I | GCAGC | 1 cut(s) | 610 |
| LweI | GCATC | 5 cut(s) | 124, 195, 534, 548, 683 |
| MaeI | CTAG | 1 cut(s) | 420 |
| MaeII | ACGT | 2 cut(s) | 854, 897 |
| MaeIII | GTNAC | 6 cut(s) | 462, 727, 857, 866, 986, 994 |
| MalI | GATC | 8 cut(s) | 93, 197, 265, 295, 441, 557, 661, 878 |
| MboI | GATC | 8 cut(s) | 91, 195, 263, 293, 439, 555, 659, 876 |
| MflI | RGATCY | 2 cut(s) | 263, 659 |
| MhlI | GDGCHC | 1 cut(s) | 779 |
| MlsI | TGGCCA | 1 cut(s) | 752 |
| MluCI | AATT | 2 cut(s) | 477, 977 |
| MluNI | TGGCCA | 1 cut(s) | 752 |
| MlyI | GAGTC | 1 cut(s) | 173 |
| MmeI | TCCRAC | 2 cut(s) | 741, 880 |
| Mox20I | TGGCCA | 1 cut(s) | 752 |
| MroXI | GAANNNNTTC | 1 cut(s) | 510 |
| MscI | TGGCCA | 1 cut(s) | 752 |
| MseI | TTAA | 2 cut(s) | 980, 1023 |
| MslI | CAYNNNNRTG | 1 cut(s) | 203 |
| Msp20I | TGGCCA | 1 cut(s) | 752 |
| MspI | CCGG | 2 cut(s) | 261, 708 |
| MspR9I | CCNGG | 1 cut(s) | 882 |
| MvaI | CCWGG | 1 cut(s) | 882 |
| MvnI | CGCG | 1 cut(s) | 359 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 165, 365, 680 |
| NcoI | CCATGG | 1 cut(s) | 684 |
| NdeII | GATC | 8 cut(s) | 91, 195, 263, 293, 439, 555, 659, 876 |
| NlaIII | CATG | 7 cut(s) | 202, 607, 688, 775, 787, 820, 934 |
| NlaIV | GGNNCC | 4 cut(s) | 111, 223, 390, 661 |
| NmeAIII | GCCGAG | 2 cut(s) | 86, 758 |
| NmuCI | GTSAC | 2 cut(s) | 857, 994 |
| NspV | TTCGAA | 1 cut(s) | 1043 |
| PagI | TCATGA | 1 cut(s) | 198 |
| PciSI | GCTCTTC | 1 cut(s) | 504 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 990, 996 |
| PdmI | GAANNNNTTC | 1 cut(s) | 510 |
| PfeI | GAWTC | 1 cut(s) | 187 |
| PkrI | GCNGC | 3 cut(s) | 388, 396, 625 |
| PleI | GAGTC | 1 cut(s) | 173 |
| PmaCI | CACGTG | 1 cut(s) | 855 |
| PmlI | CACGTG | 1 cut(s) | 855 |
| PpsI | GAGTC | 1 cut(s) | 173 |
| Ppu21I | YACGTR | 1 cut(s) | 855 |
| PpuMI | RGGWCCY | 1 cut(s) | 905 |
| PsiI | TTATAA | 1 cut(s) | 243 |
| Psp5II | RGGWCCY | 1 cut(s) | 905 |
| Psp6I | CCWGG | 1 cut(s) | 880 |
| PspCI | CACGTG | 1 cut(s) | 855 |
| PspGI | CCWGG | 1 cut(s) | 880 |
| PspN4I | GGNNCC | 4 cut(s) | 111, 223, 390, 661 |
| PspPI | GGNCC | 3 cut(s) | 109, 117, 905 |
| PspPPI | RGGWCCY | 1 cut(s) | 905 |
| PstNI | CAGNNNCTG | 1 cut(s) | 371 |
| PsuI | RGATCY | 2 cut(s) | 263, 659 |
| RsaI | GTAC | 3 cut(s) | 379, 597, 952 |
| RsaNI | GTAC | 3 cut(s) | 378, 596, 951 |
| RseI | CAYNNNNRTG | 1 cut(s) | 203 |
| SalI | GTCGAC | 2 cut(s) | 176, 943 |
| SapI | GCTCTTC | 1 cut(s) | 504 |
| SaqAI | TTAA | 2 cut(s) | 980, 1023 |
| SatI | GCNGC | 3 cut(s) | 387, 395, 624 |
| Sau3AI | GATC | 8 cut(s) | 91, 195, 263, 293, 439, 555, 659, 876 |
| Sau96I | GGNCC | 3 cut(s) | 109, 117, 905 |
| SchI | GAGTC | 1 cut(s) | 173 |
| ScrFI | CCNGG | 1 cut(s) | 882 |
| SduI | GDGCHC | 1 cut(s) | 779 |
| SfaNI | GCATC | 5 cut(s) | 124, 195, 534, 548, 683 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| SfuI | TTCGAA | 1 cut(s) | 1043 |
| SinI | GGWCC | 1 cut(s) | 905 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 203 |
| SmlI | CTYRAG | 1 cut(s) | 181 |
| SmoI | CTYRAG | 1 cut(s) | 181 |
| Sse9I | AATT | 2 cut(s) | 477, 977 |
| SsiI | CCGC | 9 cut(s) | 386, 392, 395, 482, 681, 693, 837, 849, 966 |
| SspMI | CTAG | 1 cut(s) | 420 |
| StyD4I | CCNGG | 1 cut(s) | 880 |
| StyI | CCWWGG | 1 cut(s) | 684 |
| TaaI | ACNGT | 3 cut(s) | 382, 942, 986 |
| TaiI | ACGT | 2 cut(s) | 857, 900 |
| TaqI | TCGA | 8 cut(s) | 72, 90, 129, 177, 542, 549, 944, 1043 |
| TaqII | GACCGA | 1 cut(s) | 1013 |
| TasI | AATT | 2 cut(s) | 477, 977 |
| TatI | WGTACW | 1 cut(s) | 950 |
| TauI | GCSGC | 2 cut(s) | 389, 397 |
| TfiI | GAWTC | 1 cut(s) | 187 |
| Tru1I | TTAA | 2 cut(s) | 980, 1023 |
| Tru9I | TTAA | 2 cut(s) | 980, 1023 |
| TseFI | GTSAC | 2 cut(s) | 857, 994 |
| TseI | GCWGC | 1 cut(s) | 623 |
| Tsp45I | GTSAC | 2 cut(s) | 857, 994 |
| TspDTI | ATGAA | 4 cut(s) | 20, 24, 326, 506 |
| TspGWI | ACGGA | 6 cut(s) | 112, 217, 244, 619, 752, 1027 |
| VpaK11BI | GGWCC | 1 cut(s) | 905 |
| XmiI | GTMKAC | 3 cut(s) | 177, 362, 944 |
| XmnI | GAANNNNTTC | 1 cut(s) | 510 |
| XspI | CTAG | 1 cut(s) | 420 |
| ZraI | GACGTC | 1 cut(s) | 898 |