Rroxscaffold_2G00154940

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009533
Physical Location & Seq
Forward (+)
91383149 .. 91386446
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154940.1

Sequence Viewer

Length: 1251 bp
ATGAACTCTCTGCTAAACCCCCAGACGCCGTTCGACTCCTCCGCCCACGACGACTTCCTCGAGCAAATGCTCTCCACCCTCGGCCCCTCCTCCTGCTCCTCCTGGGCCGACGAAACCCCGCCTGCGCCGCCGTCCGCCGGTAACAGCGACAACAATGTCGTCTTCTCTTACGACGACTCTTCCAACCTCGCCTCCAAGTTCCGCAGCCACCAGATCAGCGCCGGCGCCGCAGCGTCCAAGTCCTCCCCCACTGCCTCAGCCGCAGCCGCTGCCGCCATGATGCTCCAGCACCAGCTCATGATGTCCCGTGGCGGCTCCTCCTCCTCCGGCAACGGCGCTCAGATGGGGTTGTCGTTGGGGAGCAACTGTGACTTCAACGATGTTGGTGACGGCTCGTCGTTTAAATCTCCTAATCCGGGCGGTGGTGATGGTGGCTCTTCTGTTCAGGCCTTGTTTAATGGCTTTACTGGATCTCTGTCTCCGAACCAGCCTCAGCATTTTCATCACCCTCAGAACTATGGAGCTCAAGCCGCAGCCATGACTCAACCTCCGGCGAACGGCTCGGCCGGAGCTTCGGCTGCGCAACCCAGGCCCAGAGTCAGGGCCAGGCGAGGTCAAGCCACTGACCCACACTCCATCGCTGAAAGGTTACGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAGGAGCTGGTTCCCAATGCCAACAAGACAGATAAGGCTTCAATGCTAGATGAGATCATCGATTATGTAAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGTGGTGCTGGTGCTGTTGCTCCCCTTGTCACTGATATGTCATCTGAGGGAGGCGGTGACTGTATCCAGACCAGTGCCAATGGCGGGACCCGCGGGGGCCGGAGCGGCAACCAAACGGCGTCGTCCAACGACAGCATGACGGTGACGGAGCACCAGGTGGCCAAGCTCATGGAGGAGGACATGGGCTCCGCCATGCAGTACCTACAGGGCAAAGGTCTCTGCCTCATGCCTATTTCCTTGGCCACAGCTATCTCCACCGCCACGTGTCACACCAGGAACCCACTGATGAATGGCAACAGCAACAACAACCACCCGGTCATTACATCCAACGGCGGAGAGGGGCCGTCGTCTCCCAGCATGTCAGTGTTGACCGTCCAGTCAGCCACGATGGCCAGTAACGGCGGCGTTGACGGCTCCGGTAAAGACGCCGCCTCCGTCTCCAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016049 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0021700 GO:0022412 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048609 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0080090 GO:0080147 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

416

Amino Acids

42.72

Weight (kDa)

6.05

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 211 - 256 7.1e-10 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 215 - 259 1.9e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 155, 1177
Acc16I TGCGCA 1 cut(s) 582
Acc36I ACCTGC 1 cut(s) 786
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 906
AccII CGCG 1 cut(s) 894
AclWI GGATC 1 cut(s) 478
AcoI YGGCCR 4 cut(s) 564, 960, 1041, 1191
AcvI CACGTG 1 cut(s) 1065
AcyI GRCGYC 4 cut(s) 26, 225, 920, 1227
AdeI CACNNNGTG 1 cut(s) 958
AfaI GTAC 1 cut(s) 1001
AfiI CCNNNNNNNGG 7 cut(s) 137, 416, 422, 557, 600, 778, 885
AflIII ACRYGT 1 cut(s) 1064
AgsI TTSAA 2 cut(s) 376, 729
AhdI GACNNNNNGTC 1 cut(s) 394
AjnI CCWGG 5 cut(s) 101, 587, 605, 954, 1073
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AluBI AGCT 7 cut(s) 295, 524, 572, 694, 769, 967, 1049
AluI AGCT 7 cut(s) 295, 524, 572, 694, 769, 967, 1049
Alw21I GWGCWC 2 cut(s) 526, 954
Alw26I GTCTC 4 cut(s) 483, 1022, 1155, 1243
AlwI GGATC 1 cut(s) 478
AlwNI CAGNNNCTG 2 cut(s) 269, 694
Ama87I CYCGRG 1 cut(s) 59
ApeKI GCWGC 7 cut(s) 204, 230, 263, 269, 533, 578, 766
AspLEI GCGC 5 cut(s) 127, 221, 227, 338, 583
AspS9I GGNCC 7 cut(s) 83, 105, 591, 603, 888, 898, 1142
AsuC2I CCSGG 2 cut(s) 417, 1115
AsuHPI GGTGA 5 cut(s) 398, 437, 497, 869, 955
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 888
BalI TGGCCA 3 cut(s) 962, 1043, 1193
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 2 cut(s) 526, 989
BbrPI CACGTG 1 cut(s) 1065
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 2 cut(s) 526, 954
BbvCI CCTCAGC 2 cut(s) 256, 492
BbvI GCAGC 7 cut(s) 216, 242, 256, 275, 545, 565, 778
BccI CCATC 4 cut(s) 337, 422, 644, 1183
BciT130I CCWGG 5 cut(s) 103, 589, 607, 956, 1075
BciVI GTATCC 1 cut(s) 875
BcnI CCSGG 2 cut(s) 417, 1115
BcoDI GTCTC 4 cut(s) 483, 1022, 1155, 1243
BfaI CTAG 1 cut(s) 734
BfmI CTRYAG 3 cut(s) 686, 764, 1004
BfoI RGCGCY 3 cut(s) 222, 228, 339
BfuAI ACCTGC 1 cut(s) 786
BfuI GTATCC 1 cut(s) 875
BglI GCCNNNNNGGC 2 cut(s) 906, 1190
Bme1390I CCNGG 7 cut(s) 103, 417, 589, 607, 956, 1075, 1115
Bme18I GGWCC 1 cut(s) 888
BmeRI GACNNNNNGTC 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 7 cut(s) 83, 105, 591, 603, 888, 898, 1142
BmrFI CCNGG 7 cut(s) 103, 417, 589, 607, 956, 1075, 1115
BmsI GCATC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 2 cut(s) 256, 492
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 2 cut(s) 417, 1115
Bsa29I ATCGAT 1 cut(s) 747
BsaAI YACGTR 1 cut(s) 1065
BsaHI GRCGYC 4 cut(s) 26, 225, 920, 1227
BsaI GGTCTC 1 cut(s) 1022
BsaJI CCNNGG 6 cut(s) 79, 102, 307, 587, 892, 1038
BsaWI WCCGGW 1 cut(s) 1217
Bsc4I CCNNNNNNNGG 7 cut(s) 137, 416, 422, 557, 600, 778, 885
Bse118I RCCGGY 2 cut(s) 137, 221
Bse1I ACTGG 4 cut(s) 472, 873, 1177, 1194
BseBI CCWGG 5 cut(s) 103, 589, 607, 956, 1075
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 6 cut(s) 79, 102, 307, 587, 892, 1038
BseGI GGATG 1 cut(s) 1124
BseLI CCNNNNNNNGG 7 cut(s) 137, 416, 422, 557, 600, 778, 885
BseMII CTCAG 6 cut(s) 270, 353, 506, 524, 776, 837
BseNI ACTGG 4 cut(s) 472, 873, 1177, 1194
BseRI GAGGAG 7 cut(s) 28, 79, 88, 307, 310, 313, 989
BseX3I CGGCCG 1 cut(s) 564
BseXI GCAGC 7 cut(s) 216, 242, 256, 275, 545, 565, 778
BseYI CCCAGC 1 cut(s) 1154
Bsh1236I CGCG 1 cut(s) 894
Bsh1285I CGRYCG 1 cut(s) 567
BshNI GGYRCC 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 747
BsiEI CGRYCG 1 cut(s) 567
BsiHKAI GWGCWC 2 cut(s) 526, 954
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 9 cut(s) 138, 222, 327, 416, 551, 567, 901, 1115, 1218
BslFI GGGAC 2 cut(s) 289, 901
BslI CCNNNNNNNGG 7 cut(s) 137, 416, 422, 557, 600, 778, 885
BsmAI GTCTC 4 cut(s) 483, 1022, 1155, 1243
BsmBI CGTCTC 2 cut(s) 1155, 1243
BsmFI GGGAC 2 cut(s) 289, 901
Bso31I GGTCTC 1 cut(s) 1022
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 3 cut(s) 526, 954, 989
Bsp143I GATC 3 cut(s) 213, 470, 741
BspCNI CTCAG 6 cut(s) 269, 352, 505, 523, 777, 838
BspDI ATCGAT 1 cut(s) 747
BspFNI CGCG 1 cut(s) 894
BspHI TCATGA 1 cut(s) 297
BspMAI CTGCAG 2 cut(s) 690, 768
BspMI ACCTGC 1 cut(s) 786
BspPI GGATC 1 cut(s) 478
BspQI GCTCTTC 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 1022
BsrBI CCGCTC 1 cut(s) 906
BsrFI RCCGGY 2 cut(s) 137, 221
BsrI ACTGG 4 cut(s) 472, 873, 1177, 1194
BssAI RCCGGY 2 cut(s) 137, 221
BssECI CCNNGG 6 cut(s) 79, 102, 307, 587, 892, 1038
BssMI GATC 3 cut(s) 213, 470, 741
BssNI GRCGYC 4 cut(s) 26, 225, 920, 1227
BssT1I CCWWGG 1 cut(s) 1038
Bst2UI CCWGG 5 cut(s) 103, 589, 607, 956, 1075
Bst4CI ACNGT 4 cut(s) 368, 863, 943, 1174
Bst6I CTCTTC 3 cut(s) 184, 442, 649
BstACI GRCGYC 4 cut(s) 26, 225, 920, 1227
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 1065
BstC8I GCNNGC 2 cut(s) 123, 223
BstDEI CTNAG 6 cut(s) 256, 339, 492, 510, 785, 846
BstDSI CCRYGG 2 cut(s) 307, 892
BstF5I GGATG 1 cut(s) 1124
BstFNI CGCG 1 cut(s) 894
BstH2I RGCGCY 3 cut(s) 222, 228, 339
BstHHI GCGC 5 cut(s) 127, 221, 227, 338, 583
BstKTI GATC 3 cut(s) 216, 473, 744
BstMAI GTCTC 4 cut(s) 483, 1022, 1155, 1243
BstMBI GATC 3 cut(s) 213, 470, 741
BstMCI CGRYCG 1 cut(s) 567
BstNI CCWGG 5 cut(s) 103, 589, 607, 956, 1075
BstNSI RCATGY 1 cut(s) 1162
BstSCI CCNGG 7 cut(s) 101, 415, 587, 605, 954, 1073, 1113
BstSFI CTRYAG 3 cut(s) 686, 764, 1004
BstUI CGCG 1 cut(s) 894
BstV1I GCAGC 7 cut(s) 216, 242, 256, 275, 545, 565, 778
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 470
BstXI CCANNNNNNTGG 1 cut(s) 970
BstYI RGATCY 1 cut(s) 470
BstZI CGGCCG 1 cut(s) 564
Bsu15I ATCGAT 1 cut(s) 747
BsuI GTATCC 1 cut(s) 875
BsuTUI ATCGAT 1 cut(s) 747
BtgI CCRYGG 2 cut(s) 307, 892
BtgZI GCGATG 1 cut(s) 622
BtsCI GGATG 1 cut(s) 1124
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 6 cut(s) 249, 621, 831, 880, 1082, 1170
BveI ACCTGC 1 cut(s) 786
Cac8I GCNNGC 2 cut(s) 123, 223
CaiI CAGNNNCTG 2 cut(s) 269, 694
CciI TCATGA 1 cut(s) 297
CfoI GCGC 5 cut(s) 127, 221, 227, 338, 583
Cfr10I RCCGGY 2 cut(s) 137, 221
Cfr13I GGNCC 7 cut(s) 83, 105, 591, 603, 888, 898, 1142
Cfr42I CCGCGG 1 cut(s) 895
ClaI ATCGAT 1 cut(s) 747
CseI GACGC 4 cut(s) 34, 222, 909, 1235
CsiI ACCWGGT 1 cut(s) 954
Csp6I GTAC 1 cut(s) 1000
CviQI GTAC 1 cut(s) 1000
DdeI CTNAG 6 cut(s) 256, 339, 492, 510, 785, 846
DinI GGCGCC 1 cut(s) 226
DpnI GATC 3 cut(s) 215, 472, 743
DpnII GATC 3 cut(s) 213, 470, 741
DraI TTTAAA 1 cut(s) 403
DraIII CACNNNGTG 1 cut(s) 958
DrdI GACNNNNNNGTC 2 cut(s) 155, 1177
DriI GACNNNNNGTC 1 cut(s) 394
DseDI GACNNNNNNGTC 2 cut(s) 155, 1177
EaeI YGGCCR 4 cut(s) 564, 960, 1041, 1191
EagI CGGCCG 1 cut(s) 564
Eam1104I CTCTTC 3 cut(s) 184, 442, 649
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 3 cut(s) 184, 442, 649
EciI GGCGGA 4 cut(s) 31, 124, 979, 1149
Ecl136II GAGCTC 1 cut(s) 524
EclXI CGGCCG 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 1038
Eco147I AGGCCT 1 cut(s) 449
Eco24I GRGCYC 2 cut(s) 526, 989
Eco31I GGTCTC 1 cut(s) 1022
Eco47I GGWCC 1 cut(s) 888
Eco52I CGGCCG 1 cut(s) 564
Eco53kI GAGCTC 1 cut(s) 524
Eco72I CACGTG 1 cut(s) 1065
Eco88I CYCGRG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 888
EcoRII CCWGG 5 cut(s) 101, 587, 605, 954, 1073
EcoT14I CCWWGG 1 cut(s) 1038
EcoT38I GRGCYC 2 cut(s) 526, 989
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 1038
Esp3I CGTCTC 2 cut(s) 1155, 1243
FaqI GGGAC 2 cut(s) 289, 901
FauI CCCGC 4 cut(s) 126, 878, 887, 899
FokI GGATG 1 cut(s) 1111
FriOI GRGCYC 2 cut(s) 526, 989
FspBI CTAG 1 cut(s) 734
FspI TGCGCA 1 cut(s) 582
GlaI GCGC 5 cut(s) 126, 220, 226, 337, 582
GsaI CCCAGC 1 cut(s) 1158
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 3 cut(s) 222, 228, 339
HapII CCGG 9 cut(s) 138, 222, 327, 416, 551, 567, 901, 1115, 1218
HgaI GACGC 4 cut(s) 34, 222, 909, 1235
HhaI GCGC 5 cut(s) 127, 221, 227, 338, 583
Hin1I GRCGYC 4 cut(s) 26, 225, 920, 1227
Hin6I GCGC 5 cut(s) 125, 219, 225, 336, 581
HinP1I GCGC 5 cut(s) 125, 219, 225, 336, 581
HincII GTYRAC 2 cut(s) 1170, 1210
HindII GTYRAC 2 cut(s) 1170, 1210
HinfI GANTC 4 cut(s) 35, 176, 541, 597
HpaII CCGG 9 cut(s) 138, 222, 327, 416, 551, 567, 901, 1115, 1218
HphI GGTGA 5 cut(s) 398, 437, 497, 869, 955
Hpy166II GTNNAC 2 cut(s) 1170, 1210
Hpy188I TCNGA 5 cut(s) 342, 483, 513, 786, 847
Hpy188III TCNNGA 2 cut(s) 298, 868
Hpy8I GTNNAC 2 cut(s) 1170, 1210
Hpy99I CGWCG 6 cut(s) 53, 113, 176, 400, 925, 1150
HpyCH4III ACNGT 4 cut(s) 368, 863, 943, 1174
HpyCH4IV ACGT 1 cut(s) 1064
HpyCH4V TGCA 4 cut(s) 668, 688, 766, 997
HpyF3I CTNAG 6 cut(s) 256, 339, 492, 510, 785, 846
HpySE526I ACGT 1 cut(s) 1064
Hsp92I GRCGYC 4 cut(s) 26, 225, 920, 1227
HspAI GCGC 5 cut(s) 125, 219, 225, 336, 581
KasI GGCGCC 1 cut(s) 224
KflI GGGWCCC 1 cut(s) 888
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 895
Kzo9I GATC 3 cut(s) 213, 470, 741
LguI GCTCTTC 1 cut(s) 442
Lsp1109I GCAGC 7 cut(s) 216, 242, 256, 275, 545, 565, 778
LweI GCATC 1 cut(s) 270
MabI ACCWGGT 1 cut(s) 954
MaeI CTAG 1 cut(s) 734
MaeII ACGT 1 cut(s) 1064
MaeIII GTNAC 9 cut(s) 140, 368, 386, 648, 829, 857, 943, 1067, 1196
MalI GATC 3 cut(s) 215, 472, 743
MbiI CCGCTC 1 cut(s) 906
MboI GATC 3 cut(s) 213, 470, 741
MboII GAAGA 4 cut(s) 154, 171, 429, 666
MflI RGATCY 1 cut(s) 470
MhlI GDGCHC 3 cut(s) 526, 954, 989
MlsI TGGCCA 3 cut(s) 962, 1043, 1193
MluCI AATT 1 cut(s) 663
MluNI TGGCCA 3 cut(s) 962, 1043, 1193
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 4 cut(s) 29, 170, 535, 606
MmeI TCCRAC 3 cut(s) 207, 951, 1152
Mox20I TGGCCA 3 cut(s) 962, 1043, 1193
MreI CGCCGGCG 1 cut(s) 221
MroNI GCCGGC 1 cut(s) 221
MscI TGGCCA 3 cut(s) 962, 1043, 1193
MseI TTAA 2 cut(s) 402, 456
MslI CAYNNNNRTG 3 cut(s) 836, 941, 1163
Msp20I TGGCCA 3 cut(s) 962, 1043, 1193
MspA1I CMGCKG 2 cut(s) 269, 894
MspI CCGG 9 cut(s) 138, 222, 327, 416, 551, 567, 901, 1115, 1218
MspR9I CCNGG 7 cut(s) 103, 417, 589, 607, 956, 1075, 1115
MvaI CCWGG 5 cut(s) 103, 589, 607, 956, 1075
MvnI CGCG 1 cut(s) 894
NaeI GCCGGC 1 cut(s) 223
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 2 cut(s) 417, 1115
NdeII GATC 3 cut(s) 213, 470, 741
NgoMIV GCCGGC 1 cut(s) 221
NmeAIII GCCGAG 2 cut(s) 60, 542
NmuCI GTSAC 6 cut(s) 368, 386, 829, 857, 943, 1067
NsbI TGCGCA 1 cut(s) 582
NspI RCATGY 1 cut(s) 1162
PaeR7I CTCGAG 1 cut(s) 59
PagI TCATGA 1 cut(s) 297
PceI AGGCCT 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 442
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 1233
PdiI GCCGGC 1 cut(s) 223
PleI GAGTC 4 cut(s) 29, 170, 535, 605
PluTI GGCGCC 1 cut(s) 228
PmaCI CACGTG 1 cut(s) 1065
PmlI CACGTG 1 cut(s) 1065
PpsI GAGTC 4 cut(s) 29, 170, 535, 605
Ppu21I YACGTR 1 cut(s) 1065
PpuMI RGGWCCY 1 cut(s) 888
Psp124BI GAGCTC 1 cut(s) 526
Psp5II RGGWCCY 1 cut(s) 888
Psp6I CCWGG 5 cut(s) 101, 587, 605, 954, 1073
PspCI CACGTG 1 cut(s) 1065
PspFI CCCAGC 1 cut(s) 1154
PspGI CCWGG 5 cut(s) 101, 587, 605, 954, 1073
PspPI GGNCC 7 cut(s) 83, 105, 591, 603, 888, 898, 1142
PspPPI RGGWCCY 1 cut(s) 888
PspXI VCTCGAGB 1 cut(s) 59
PstI CTGCAG 2 cut(s) 690, 768
PstNI CAGNNNCTG 2 cut(s) 269, 694
PsuI RGATCY 1 cut(s) 470
RsaI GTAC 1 cut(s) 1001
RsaNI GTAC 1 cut(s) 1000
RseI CAYNNNNRTG 3 cut(s) 836, 941, 1163
SacI GAGCTC 1 cut(s) 526
SacII CCGCGG 1 cut(s) 895
SapI GCTCTTC 1 cut(s) 442
SaqAI TTAA 2 cut(s) 402, 456
Sau3AI GATC 3 cut(s) 213, 470, 741
Sau96I GGNCC 7 cut(s) 83, 105, 591, 603, 888, 898, 1142
SbfI CCTGCAGG 1 cut(s) 690
SchI GAGTC 4 cut(s) 29, 170, 535, 606
ScrFI CCNGG 7 cut(s) 103, 417, 589, 607, 956, 1075, 1115
SdaI CCTGCAGG 1 cut(s) 690
SduI GDGCHC 3 cut(s) 526, 954, 989
SexAI ACCWGGT 1 cut(s) 954
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 3 cut(s) 686, 764, 1004
SfoI GGCGCC 1 cut(s) 226
Sfr274I CTCGAG 1 cut(s) 59
Sfr303I CCGCGG 1 cut(s) 895
SgrAI CRCCGGYG 1 cut(s) 221
SgrBI CCGCGG 1 cut(s) 895
SinI GGWCC 1 cut(s) 888
SlaI CTCGAG 1 cut(s) 59
SmiMI CAYNNNNRTG 3 cut(s) 836, 941, 1163
SmlI CTYRAG 2 cut(s) 59, 525
SmoI CTYRAG 2 cut(s) 59, 525
Sse8387I CCTGCAGG 1 cut(s) 690
Sse9I AATT 1 cut(s) 663
SseBI AGGCCT 1 cut(s) 449
SspDI GGCGCC 1 cut(s) 224
SspMI CTAG 1 cut(s) 734
SstI GAGCTC 1 cut(s) 526
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 7 cut(s) 101, 415, 587, 605, 954, 1073, 1113
StyI CCWWGG 1 cut(s) 1038
TaaI ACNGT 4 cut(s) 368, 863, 943, 1174
TaiI ACGT 1 cut(s) 1067
TaqI TCGA 3 cut(s) 33, 60, 747
TasI AATT 1 cut(s) 663
Tru1I TTAA 2 cut(s) 402, 456
Tru9I TTAA 2 cut(s) 402, 456
TscAI CASTG 6 cut(s) 256, 628, 838, 880, 1089, 1170
TseFI GTSAC 6 cut(s) 368, 386, 829, 857, 943, 1067
TseI GCWGC 7 cut(s) 204, 230, 263, 269, 533, 578, 766
Tsp45I GTSAC 6 cut(s) 368, 386, 829, 857, 943, 1067
TspDTI ATGAA 4 cut(s) 17, 491, 692, 1103
TspGWI ACGGA 2 cut(s) 962, 1225
TspRI CASTG 6 cut(s) 256, 628, 838, 880, 1089, 1170
VpaK11BI GGWCC 1 cut(s) 888
XceI RCATGY 1 cut(s) 1162
XhoI CTCGAG 1 cut(s) 59
XspI CTAG 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.