Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009533

Physical Location & Seq

Genomic Coordinates Reverse (-)

4829039 .. 4829482

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G043700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCTTGTCTTTGGGCAACGGAGACTTTGACCGCTCCAACAACGACGTCGTCCAGGGTTCCTCCTCCTTTAAATCTCCCAATCCTGTGGGAGGTGAGGGGGCTTCTTCTGTTCAAACCCTGTTCAATTGGTTCTCTGGATCACTGCATGGGGGGGCTACTACTCAGTCTCCCAATCAGCATTTTCACCAACCTCAGGGAGGCTCGCTGCAGGCACAGAACTATGGAGGTCCAGGGGCGGCGATGAACCAAGGTCCGGCGAGTGGCTCGGGTGGGGGCGGGGGTGCACCCGCACAAGCCAGACCCAGAGTCAGGGCGAGGAGAGGCCAAGCCACTGACCCACACAACATCGCTGAAAGATTACGGAGAAAGAGAATCGCAGAGAGAATGAAGGCTCTGCAGGAGCTGGTTCCCAATGCGAACAAGAACCAAGTTTGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016049 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0021700 GO:0022412 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048609 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0080090 GO:0080147 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

148

Amino Acids

15.29

Weight (kDa)

10.82

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009533)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24260 AT2G24260
fragaria_vesca	FvH4_1g01110 FvH4_1g01110
malus_domestica	MD02G1009200.v1.1 MD15G1154600.v1.1
prunus_persica	Prupe.2G080600_v2.0.a1 Prupe.5G043700_v2.0.a1 Prupe.7G260800_v2.0.a1 Prupe.7G260800_v2.0.a1
pyrus_communis	pycom02g00820 pycom15g13820
rosa_chinensis	RchiOBHm_Chr2g0085911
rosa_laevigata	RLG00000015726
rosa_multiflora	Rmu_sc0001748.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154940
rosa_rugosa	Rorug01G0464300
rosa_samantha	Rh2AG013200 Rh2BG013900 Rh2CG014400 Rh2DG015700
rosa_wichuraiana	Rw2G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccBSI	CCGCTC	1 cut(s)	36
AciI	CCGC	4 cut(s)	34, 239, 279, 291
AclWI	GGATC	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	6 cut(s)	92, 196, 200, 256, 263, 312
AgsI	TTSAA	2 cut(s)	116, 127
AhdI	GACNNNNNGTC	1 cut(s)	308
AjnI	CCWGG	2 cut(s)	54, 232
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	18, 174
Alw44I	GTGCAC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	2 cut(s)	3, 325
ApaLI	GTGCAC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	230, 254
AsuHPI	GGTGA	2 cut(s)	107, 179
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	230, 254
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	195
BciT130I	CCWGG	2 cut(s)	56, 234
BcoDI	GTCTC	2 cut(s)	18, 174
BfmI	CTRYAG	2 cut(s)	209, 398
BisI	GCNGC	2 cut(s)	209, 240
BlsI	GCNGC	2 cut(s)	210, 241
Bme1390I	CCNGG	2 cut(s)	56, 234
Bme18I	GGWCC	2 cut(s)	230, 254
BmeRI	GACNNNNNGTC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	230, 254
BmiI	GGNNCC	2 cut(s)	61, 411
BmrFI	CCNGG	2 cut(s)	56, 234
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	55, 233, 250
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	6 cut(s)	92, 196, 200, 256, 263, 312
Bse21I	CCTNAGG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	56, 234
BseDI	CCNNGG	3 cut(s)	55, 233, 250
BseLI	CCNNNNNNNGG	6 cut(s)	92, 196, 200, 256, 263, 312
BseMII	CTCAG	2 cut(s)	179, 209
BseRI	GAGGAG	2 cut(s)	55, 334
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	195
BshFI	GGCC	2 cut(s)	5, 327
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	6 cut(s)	92, 196, 200, 256, 263, 312
BsmAI	GTCTC	2 cut(s)	18, 174
BsnI	GGCC	2 cut(s)	5, 327
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	4 cut(s)	34, 239, 279, 291
BspANI	GGCC	2 cut(s)	5, 327
BspCNI	CTCAG	2 cut(s)	178, 208
BspLI	GGNNCC	2 cut(s)	61, 411
BspMAI	CTGCAG	2 cut(s)	213, 402
BspPI	GGATC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	36
BssECI	CCNNGG	3 cut(s)	55, 233, 250
BssMI	GATC	1 cut(s)	140
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	56, 234
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	206, 213
BstDEI	CTNAG	2 cut(s)	165, 195
BstENI	CCTNNNNNAGG	2 cut(s)	90, 198
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	2 cut(s)	18, 174
BstMBI	GATC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	56, 234
BstSCI	CCNGG	2 cut(s)	54, 232
BstSFI	CTRYAG	2 cut(s)	209, 398
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	5, 327
BtgZI	GCGATG	2 cut(s)	257, 334
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	143, 333
Cac8I	GCNNGC	2 cut(s)	206, 213
CaiI	CAGNNNCTG	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	230, 254
CviAII	CATG	1 cut(s)	149
DdeI	CTNAG	2 cut(s)	165, 195
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
DraI	TTTAAA	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	308
Eam1105I	GACNNNNNGTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	230, 254
Eco81I	CCTNAGG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	2 cut(s)	90, 198
EcoRII	CCWGG	2 cut(s)	54, 232
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	1 cut(s)	152
FaiI	YATR	3 cut(s)	150, 225, 442
FatI	CATG	1 cut(s)	148
FauI	CCCGC	2 cut(s)	272, 298
Fnu4HI	GCNGC	2 cut(s)	209, 240
Fsp4HI	GCNGC	2 cut(s)	209, 240
GluI	GCNGC	2 cut(s)	209, 240
HaeIII	GGCC	2 cut(s)	5, 327
HapII	CCGG	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	2 cut(s)	309, 375
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	107, 179
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188III	TCNNGA	1 cut(s)	138
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	2 cut(s)	50, 53
HpyAV	CCTTC	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	148, 211, 287, 400
HpyF3I	CTNAG	2 cut(s)	165, 195
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	140
LmnI	GCTCC	2 cut(s)	41, 403
Lsp1109I	GCAGC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	48
MalI	GATC	1 cut(s)	142
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	1 cut(s)	140
MboII	GAAGA	1 cut(s)	99
MfeI	CAATTG	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	9 cut(s)	73, 76, 86, 91, 194, 204, 221, 312, 317
MseI	TTAA	1 cut(s)	72
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	56, 234
MunI	CAATTG	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	56, 234
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	2 cut(s)	61, 411
PfeI	GAWTC	1 cut(s)	375
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	210, 241
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	54, 232
PspGI	CCWGG	2 cut(s)	54, 232
PspN4I	GGNNCC	2 cut(s)	61, 411
PspPI	GGNCC	2 cut(s)	230, 254
PstI	CTGCAG	2 cut(s)	213, 402
PstNI	CAGNNNCTG	1 cut(s)	406
PsyI	GACNNNGTC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	209, 240
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	2 cut(s)	230, 254
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	2 cut(s)	56, 234
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	6 cut(s)	51, 97, 196, 232, 256, 408
SfcI	CTRYAG	2 cut(s)	209, 398
SinI	GGWCC	2 cut(s)	230, 254
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	4 cut(s)	34, 239, 279, 291
StyD4I	CCNGG	2 cut(s)	54, 232
StyI	CCWWGG	1 cut(s)	250
TaiI	ACGT	1 cut(s)	51
TasI	AATT	1 cut(s)	127
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	150, 340
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	260, 404
TspGWI	ACGGA	2 cut(s)	36, 379
TspRI	CASTG	2 cut(s)	150, 340
Tth111I	GACNNNGTC	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	285
VpaK11BI	GGWCC	2 cut(s)	230, 254
XagI	CCTNNNNNAGG	2 cut(s)	90, 198
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.