transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24395 |
| fragaria_vesca | FvH4_2g36440 |
| malus_domestica | MD08G1124100.v1.1 MD15G1102800.v1.1 |
| prunus_persica | Prupe.1G455800_v2.0.a1 |
| pyrus_communis | pycom08g10290 |
| rosa_chinensis | RchiOBHm_Chr6g0305461 |
| rosa_laevigata | RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261 |
| rosa_multiflora | Rmu_sc0007817.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00162800 |
| rosa_samantha | Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900 |
| rosa_wichuraiana | Rw6G039420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 91 |
| AclI | AACGTT | 1 cut(s) | 17 |
| AgsI | TTSAA | 2 cut(s) | 140, 349 |
| AjiI | CACGTC | 1 cut(s) | 87 |
| AluBI | AGCT | 2 cut(s) | 157, 311 |
| AluI | AGCT | 2 cut(s) | 157, 311 |
| Alw26I | GTCTC | 2 cut(s) | 113, 171 |
| ApeKI | GCWGC | 1 cut(s) | 169 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 88, 120 |
| AspLEI | GCGC | 1 cut(s) | 67 |
| BbsI | GAAGAC | 1 cut(s) | 381 |
| BbvCI | CCTCAGC | 1 cut(s) | 153 |
| BbvI | GCAGC | 1 cut(s) | 181 |
| BccI | CCATC | 2 cut(s) | 64, 216 |
| BceAI | ACGGC | 3 cut(s) | 52, 62, 394 |
| BcoDI | GTCTC | 2 cut(s) | 113, 171 |
| BfoI | RGCGCY | 1 cut(s) | 68 |
| BisI | GCNGC | 1 cut(s) | 170 |
| BlsI | GCNGC | 1 cut(s) | 171 |
| BmgBI | CACGTC | 1 cut(s) | 87 |
| BmsI | GCATC | 2 cut(s) | 42, 116 |
| BpiI | GAAGAC | 1 cut(s) | 381 |
| Bpu10I | CCTNAGC | 1 cut(s) | 153 |
| Bse118I | RCCGGY | 1 cut(s) | 73 |
| BseGI | GGATG | 2 cut(s) | 80, 227 |
| BseMII | CTCAG | 3 cut(s) | 167, 261, 384 |
| BseXI | GCAGC | 1 cut(s) | 181 |
| Bsh1236I | CGCG | 1 cut(s) | 91 |
| BsiSI | CCGG | 1 cut(s) | 74 |
| BsmAI | GTCTC | 2 cut(s) | 113, 171 |
| BsmBI | CGTCTC | 2 cut(s) | 113, 171 |
| Bsp143I | GATC | 1 cut(s) | 160 |
| BspCNI | CTCAG | 3 cut(s) | 166, 262, 383 |
| BspFNI | CGCG | 1 cut(s) | 91 |
| BsrFI | RCCGGY | 1 cut(s) | 73 |
| BssAI | RCCGGY | 1 cut(s) | 73 |
| BssMI | GATC | 1 cut(s) | 160 |
| BstC8I | GCNNGC | 1 cut(s) | 75 |
| BstDEI | CTNAG | 3 cut(s) | 153, 270, 370 |
| BstF5I | GGATG | 2 cut(s) | 80, 227 |
| BstFNI | CGCG | 1 cut(s) | 91 |
| BstH2I | RGCGCY | 1 cut(s) | 68 |
| BstHHI | GCGC | 1 cut(s) | 67 |
| BstKTI | GATC | 1 cut(s) | 163 |
| BstMAI | GTCTC | 2 cut(s) | 113, 171 |
| BstMBI | GATC | 1 cut(s) | 160 |
| BstUI | CGCG | 1 cut(s) | 91 |
| BstV1I | GCAGC | 1 cut(s) | 181 |
| BstV2I | GAAGAC | 1 cut(s) | 381 |
| BtrI | CACGTC | 1 cut(s) | 87 |
| BtsCI | GGATG | 2 cut(s) | 80, 227 |
| Cac8I | GCNNGC | 1 cut(s) | 75 |
| CfoI | GCGC | 1 cut(s) | 67 |
| Cfr10I | RCCGGY | 1 cut(s) | 73 |
| CseI | GACGC | 1 cut(s) | 80 |
| CviAII | CATG | 1 cut(s) | 36 |
| CviJI | RGCY | 7 cut(s) | 25, 49, 77, 118, 151, 157, 311 |
| CviKI_1 | RGCY | 7 cut(s) | 25, 49, 77, 118, 151, 157, 311 |
| DdeI | CTNAG | 3 cut(s) | 153, 270, 370 |
| DpnI | GATC | 1 cut(s) | 162 |
| DpnII | GATC | 1 cut(s) | 160 |
| Esp3I | CGTCTC | 2 cut(s) | 113, 171 |
| FaeI | CATG | 1 cut(s) | 39 |
| FaiI | YATR | 1 cut(s) | 37 |
| FatI | CATG | 1 cut(s) | 35 |
| Fnu4HI | GCNGC | 1 cut(s) | 170 |
| FokI | GGATG | 2 cut(s) | 67, 234 |
| Fsp4HI | GCNGC | 1 cut(s) | 170 |
| GlaI | GCGC | 1 cut(s) | 66 |
| GluI | GCNGC | 1 cut(s) | 170 |
| HaeII | RGCGCY | 1 cut(s) | 68 |
| HapII | CCGG | 1 cut(s) | 74 |
| HgaI | GACGC | 1 cut(s) | 80 |
| HhaI | GCGC | 1 cut(s) | 67 |
| Hin1II | CATG | 1 cut(s) | 39 |
| Hin6I | GCGC | 1 cut(s) | 65 |
| HinP1I | GCGC | 1 cut(s) | 65 |
| HinfI | GANTC | 1 cut(s) | 282 |
| HpaII | CCGG | 1 cut(s) | 74 |
| Hpy188I | TCNGA | 2 cut(s) | 271, 373 |
| Hpy188III | TCNNGA | 1 cut(s) | 140 |
| Hpy99I | CGWCG | 5 cut(s) | 73, 91, 96, 108, 294 |
| HpyCH4IV | ACGT | 3 cut(s) | 17, 86, 103 |
| HpyF3I | CTNAG | 3 cut(s) | 153, 270, 370 |
| HpySE526I | ACGT | 3 cut(s) | 17, 86, 103 |
| Hsp92II | CATG | 1 cut(s) | 39 |
| HspAI | GCGC | 1 cut(s) | 65 |
| KroI | GCCGGC | 1 cut(s) | 73 |
| KroNI | GCCGGC | 1 cut(s) | 75 |
| Kzo9I | GATC | 1 cut(s) | 160 |
| LpnPI | CCDG | 2 cut(s) | 87, 158 |
| Lsp1109I | GCAGC | 1 cut(s) | 181 |
| LweI | GCATC | 2 cut(s) | 42, 116 |
| MaeII | ACGT | 3 cut(s) | 17, 86, 103 |
| MaeIII | GTNAC | 3 cut(s) | 18, 209, 355 |
| MalI | GATC | 1 cut(s) | 162 |
| MboI | GATC | 1 cut(s) | 160 |
| MboII | GAAGA | 1 cut(s) | 386 |
| MluCI | AATT | 1 cut(s) | 30 |
| MmeI | TCCRAC | 1 cut(s) | 323 |
| MnlI | CCTC | 3 cut(s) | 36, 162, 196 |
| MroNI | GCCGGC | 1 cut(s) | 73 |
| MseI | TTAA | 1 cut(s) | 114 |
| MslI | CAYNNNNRTG | 1 cut(s) | 124 |
| MspI | CCGG | 1 cut(s) | 74 |
| MvnI | CGCG | 1 cut(s) | 91 |
| NaeI | GCCGGC | 1 cut(s) | 75 |
| NdeII | GATC | 1 cut(s) | 160 |
| NgoMIV | GCCGGC | 1 cut(s) | 73 |
| NlaIII | CATG | 1 cut(s) | 39 |
| NmuCI | GTSAC | 1 cut(s) | 355 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 100, 286 |
| PdiI | GCCGGC | 1 cut(s) | 75 |
| PfeI | GAWTC | 1 cut(s) | 282 |
| PflFI | GACNNNGTC | 1 cut(s) | 294 |
| PkrI | GCNGC | 1 cut(s) | 171 |
| Psp1406I | AACGTT | 1 cut(s) | 17 |
| PsyI | GACNNNGTC | 1 cut(s) | 294 |
| RseI | CAYNNNNRTG | 1 cut(s) | 124 |
| SaqAI | TTAA | 1 cut(s) | 114 |
| SatI | GCNGC | 1 cut(s) | 170 |
| Sau3AI | GATC | 1 cut(s) | 160 |
| SetI | ASST | 5 cut(s) | 20, 89, 106, 159, 313 |
| SfaNI | GCATC | 2 cut(s) | 42, 116 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 124 |
| Sse9I | AATT | 1 cut(s) | 30 |
| TaiI | ACGT | 3 cut(s) | 20, 89, 106 |
| TaqI | TCGA | 5 cut(s) | 94, 124, 159, 280, 289 |
| TasI | AATT | 1 cut(s) | 30 |
| TfiI | GAWTC | 1 cut(s) | 282 |
| Tru1I | TTAA | 1 cut(s) | 114 |
| Tru9I | TTAA | 1 cut(s) | 114 |
| TseFI | GTSAC | 1 cut(s) | 355 |
| TseI | GCWGC | 1 cut(s) | 169 |
| Tsp45I | GTSAC | 1 cut(s) | 355 |
| TspDTI | ATGAA | 3 cut(s) | 24, 69, 399 |
| Tth111I | GACNNNGTC | 1 cut(s) | 294 |