MD08G1124100.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013550
Physical Location & Seq
Reverse (-)
11663666 .. 11664871
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1124100.v1.1.491

Sequence Viewer

Length: 360 bp
ATGGCGGCGACGATGACGTCCTTCGCCCCCTGGATCCTCACTTCTCTACGTACTTCTCCCTCCCCTCCGCCAACGACAAGTCGTTTCTTCAAGCCCGCTAATTGCTCACCCATCATCCAACAACAACAGCAACAACAAGAGGCTGACGTGTCAATTCTGTGCGAGGATTGCAACGGGAGAGGGTGGCTGCTCTGCGACTTTTGCAAAGGGCAGAAAACGAACGTGAAATCCGAGACCAGTCGAATCTACCGGCGATGCCCATCTTGCAGAGCTATTGGTCAGGTGTTGTGTTCAAAGTGCAAGGTTTTCAAATGTGTCACATTCCCAAATTACAATGATGGTGATGAGGTGTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.34

Weight (kDa)

8.74

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24395
fragaria_vesca FvH4_2g36440
malus_domestica MD08G1124100.v1.1 MD15G1102800.v1.1
prunus_persica Prupe.1G455800_v2.0.a1
pyrus_communis pycom08g10290
rosa_chinensis RchiOBHm_Chr6g0305461
rosa_laevigata RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261
rosa_multiflora Rmu_sc0007817.1_g000005
rosa_roxburghii Rroxscaffold_7G00162800
rosa_samantha Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900
rosa_wichuraiana Rw6G039420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AatII GACGTC 1 cut(s) 20
AciI CCGC 3 cut(s) 5, 68, 96
AclWI GGATC 2 cut(s) 28, 41
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 3 cut(s) 91, 294, 310
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 29
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 2 cut(s) 28, 41
ApeKI GCWGC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 99, 353
BamHI GGATCC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 174
BccI CCATC 3 cut(s) 119, 268, 332
BciT130I CCWGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 227
BisI GCNGC 2 cut(s) 6, 188
BlsI GCNGC 2 cut(s) 7, 189
Bme1390I CCNGG 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 259
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 114
BseJI GATNNNNATC 1 cut(s) 259
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 3 cut(s) 5, 68, 96
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 2 cut(s) 28, 41
BspTNI GGTCTC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 249
BsrI ACTGG 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 96
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 168, 201, 264
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstSNI TACGTA 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 268
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 249
Csp6I GTAC 1 cut(s) 51
CviJI RGCY 4 cut(s) 94, 143, 187, 272
CviKI_1 RGCY 4 cut(s) 94, 143, 187, 272
CviQI GTAC 1 cut(s) 51
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EciI GGCGGA 1 cut(s) 57
Eco105I TACGTA 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 29
FauI CCCGC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 6, 188
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 6, 188
GluI GCNGC 2 cut(s) 6, 188
HapII CCGG 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 17
HinfI GANTC 1 cut(s) 243
HpaII CCGG 1 cut(s) 250
HphI GGTGA 2 cut(s) 99, 353
Hpy188I TCNGA 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 4 cut(s) 17, 49, 147, 222
HpyCH4V TGCA 4 cut(s) 171, 204, 267, 300
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 201, 264
HpySE526I ACGT 4 cut(s) 17, 49, 147, 222
Hsp92I GRCGYC 1 cut(s) 17
Kzo9I GATC 1 cut(s) 33
LpnPI CCDG 5 cut(s) 16, 43, 250, 263, 266
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 245
MaeII ACGT 4 cut(s) 17, 49, 147, 222
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 33
MluCI AATT 3 cut(s) 100, 153, 328
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 7 cut(s) 47, 70, 75, 133, 157, 173, 340
MseI TTAA 1 cut(s) 358
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 168, 201, 264
NdeII GATC 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 2 cut(s) 7, 189
Ppu21I YACGTR 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 2 cut(s) 6, 188
Sau3AI GATC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 31
SetI ASST 8 cut(s) 20, 52, 150, 225, 274, 285, 306, 351
SfaNI GCATC 1 cut(s) 245
SnaBI TACGTA 1 cut(s) 50
Sse9I AATT 3 cut(s) 100, 153, 328
SsiI CCGC 3 cut(s) 5, 68, 96
StyD4I CCNGG 1 cut(s) 29
TaiI ACGT 4 cut(s) 20, 52, 150, 225
TaqI TCGA 1 cut(s) 241
TasI AATT 3 cut(s) 100, 153, 328
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 316
ZraI GACGTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.