Rh6DG452900

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013550
Physical Location & Seq
Forward (+)
62469571 .. 62473895
4325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG452900.1

Sequence Viewer

Length: 363 bp
ATGGCGTCGATGATGATGATGATGTCTATCTCCCCCTGGAAACTCAGCTCTTTACGGACTATGCCACTGCCACCGTCAACGACGAGTCGTTTTCCGAAGCGCGCGCAATGCTCAACAATCAAGCAAGAACCAGAGGTTGATTCTTCTTCTGCAGCAATTTTGTGCGAGCCTTGCAATGGGAAAGGGTGGTTACTCTGTGATTTCTGTAAAGGACAGAAAACCAATGTGAAATCTGACTCTAATAGGACCTATCGGCGATGCCCAACTTGTAGAGCCATTGGGTATGTGCTGTGTTCAAAGTGTAAGGTCTTCAAATGTGTCACATTCCCAAATTACAATGATGGTGAAGAGTTGTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.48

Weight (kDa)

9.1

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24395
fragaria_vesca FvH4_2g36440
malus_domestica MD08G1124100.v1.1 MD15G1102800.v1.1
prunus_persica Prupe.1G455800_v2.0.a1
pyrus_communis pycom08g10290
rosa_chinensis RchiOBHm_Chr6g0305461
rosa_laevigata RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261
rosa_multiflora Rmu_sc0007817.1_g000005
rosa_roxburghii Rroxscaffold_7G00162800
rosa_samantha Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900
rosa_wichuraiana Rw6G039420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 102, 104
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 297, 313
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 152
AspLEI GCGC 3 cut(s) 102, 104, 106
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 37
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 2 cut(s) 113, 181
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 2 cut(s) 113, 181
BseMII CTCAG 1 cut(s) 58
BsePI GCGCGC 2 cut(s) 100, 102
BseXI GCAGC 1 cut(s) 164
Bsh1236I CGCG 2 cut(s) 102, 104
BslI CCNNNNNNNGG 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 2 cut(s) 102, 104
BspMAI CTGCAG 1 cut(s) 154
BsrDI GCAATG 2 cut(s) 113, 181
BssECI CCNNGG 1 cut(s) 35
BssHII GCGCGC 2 cut(s) 100, 102
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 342
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 102, 104, 167
BstDEI CTNAG 1 cut(s) 44
BstFNI CGCG 2 cut(s) 102, 104
BstHHI GCGC 3 cut(s) 102, 104, 106
BstMWI GCNNNNNNNGC 2 cut(s) 108, 171
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 2 cut(s) 102, 104
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 102, 104, 167
CfoI GCGC 3 cut(s) 102, 104, 106
Cfr13I GGNCC 1 cut(s) 246
CviJI RGCY 3 cut(s) 48, 169, 275
CviKI_1 RGCY 3 cut(s) 48, 169, 275
DdeI CTNAG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 35
FaiI YATR 2 cut(s) 62, 285
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GlaI GCGC 3 cut(s) 101, 103, 105
GluI GCNGC 1 cut(s) 153
HhaI GCGC 3 cut(s) 102, 104, 106
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 3 cut(s) 100, 102, 104
HinP1I GCGC 3 cut(s) 100, 102, 104
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 3 cut(s) 85, 140, 236
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 2 cut(s) 96, 235
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 2 cut(s) 10, 85
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 152, 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 171
HpyF3I CTNAG 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 3 cut(s) 100, 102, 104
LpnPI CCDG 3 cut(s) 22, 49, 144
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 189, 319
MboII GAAGA 4 cut(s) 135, 138, 301, 359
MluCI AATT 2 cut(s) 156, 331
MlyI GAGTC 2 cut(s) 94, 230
MnlI CCTC 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
MvnI CGCG 2 cut(s) 102, 104
MwoI GCNNNNNNNGC 2 cut(s) 108, 171
NmuCI GTSAC 1 cut(s) 319
PauI GCGCGC 2 cut(s) 100, 102
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 93, 230
PpsI GAGTC 2 cut(s) 93, 230
PpuMI RGGWCCY 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspPI GGNCC 1 cut(s) 246
PspPPI RGGWCCY 1 cut(s) 246
PstI CTGCAG 1 cut(s) 154
PteI GCGCGC 2 cut(s) 100, 102
SatI GCNGC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 2 cut(s) 94, 230
ScrFI CCNGG 1 cut(s) 37
SetI ASST 4 cut(s) 50, 138, 251, 309
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 246
Sse9I AATT 2 cut(s) 156, 331
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 8
TasI AATT 2 cut(s) 156, 331
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.