transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24395 |
| fragaria_vesca | FvH4_2g36440 |
| malus_domestica | MD08G1124100.v1.1 MD15G1102800.v1.1 |
| prunus_persica | Prupe.1G455800_v2.0.a1 |
| pyrus_communis | pycom08g10290 |
| rosa_chinensis | RchiOBHm_Chr6g0305461 |
| rosa_laevigata | RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261 |
| rosa_multiflora | Rmu_sc0007817.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00162800 |
| rosa_samantha | Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900 |
| rosa_wichuraiana | Rw6G039420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 25 |
| AatII | GACGTC | 1 cut(s) | 29 |
| AciI | CCGC | 4 cut(s) | 5, 39, 80, 110 |
| AcyI | GRCGYC | 1 cut(s) | 26 |
| AfaI | GTAC | 1 cut(s) | 64 |
| AgsI | TTSAA | 2 cut(s) | 258, 274 |
| ApeKI | GCWGC | 1 cut(s) | 202 |
| AsuC2I | CCSGG | 1 cut(s) | 43 |
| AsuHPI | GGTGA | 1 cut(s) | 317 |
| BanII | GRGCYC | 1 cut(s) | 108 |
| BbsI | GAAGAC | 1 cut(s) | 17 |
| BbvCI | CCTCAGC | 1 cut(s) | 159 |
| BbvI | GCAGC | 1 cut(s) | 189 |
| BccI | CCATC | 1 cut(s) | 296 |
| BcnI | CCSGG | 1 cut(s) | 43 |
| BisI | GCNGC | 4 cut(s) | 6, 39, 80, 203 |
| BlsI | GCNGC | 4 cut(s) | 7, 40, 81, 204 |
| Bme1390I | CCNGG | 1 cut(s) | 43 |
| BmiI | GGNNCC | 1 cut(s) | 47 |
| BmrFI | CCNGG | 1 cut(s) | 43 |
| BpiI | GAAGAC | 1 cut(s) | 17 |
| Bpu10I | CCTNAGC | 1 cut(s) | 159 |
| BpuMI | CCSGG | 1 cut(s) | 43 |
| BsaHI | GRCGYC | 1 cut(s) | 26 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseMII | CTCAG | 1 cut(s) | 150 |
| BseRI | GAGGAG | 2 cut(s) | 45, 64 |
| BseXI | GCAGC | 1 cut(s) | 189 |
| BsiSI | CCGG | 1 cut(s) | 43 |
| BsmI | GAATGC | 1 cut(s) | 269 |
| Bsp1286I | GDGCHC | 1 cut(s) | 108 |
| BspACI | CCGC | 4 cut(s) | 5, 39, 80, 110 |
| BspCNI | CTCAG | 1 cut(s) | 151 |
| BspLI | GGNNCC | 1 cut(s) | 47 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BssNI | GRCGYC | 1 cut(s) | 26 |
| BstACI | GRCGYC | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 2 cut(s) | 84, 119 |
| BstDEI | CTNAG | 1 cut(s) | 159 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 118, 164, 183, 216 |
| BstSCI | CCNGG | 1 cut(s) | 41 |
| BstV1I | GCAGC | 1 cut(s) | 189 |
| BstV2I | GAAGAC | 1 cut(s) | 17 |
| Cac8I | GCNNGC | 2 cut(s) | 84, 119 |
| Csp6I | GTAC | 1 cut(s) | 63 |
| CviJI | RGCY | 3 cut(s) | 106, 158, 202 |
| CviKI_1 | RGCY | 3 cut(s) | 106, 158, 202 |
| CviQI | GTAC | 1 cut(s) | 63 |
| DdeI | CTNAG | 1 cut(s) | 159 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 25 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 25 |
| Eco24I | GRGCYC | 1 cut(s) | 108 |
| EcoT38I | GRGCYC | 1 cut(s) | 108 |
| FauI | CCCGC | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 39, 80, 203 |
| FriOI | GRGCYC | 1 cut(s) | 108 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 39, 80, 203 |
| GluI | GCNGC | 4 cut(s) | 6, 39, 80, 203 |
| HapII | CCGG | 1 cut(s) | 43 |
| Hin1I | GRCGYC | 1 cut(s) | 26 |
| HinfI | GANTC | 1 cut(s) | 169 |
| HpaII | CCGG | 1 cut(s) | 43 |
| HphI | GGTGA | 1 cut(s) | 317 |
| Hpy99I | CGWCG | 7 cut(s) | 19, 22, 25, 28, 38, 63, 191 |
| HpyAV | CCTTC | 2 cut(s) | 40, 304 |
| HpyCH4IV | ACGT | 2 cut(s) | 26, 61 |
| HpyCH4V | TGCA | 3 cut(s) | 153, 219, 264 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 118, 164, 183, 216 |
| HpyF3I | CTNAG | 1 cut(s) | 159 |
| HpySE526I | ACGT | 2 cut(s) | 26, 61 |
| Hsp92I | GRCGYC | 1 cut(s) | 26 |
| LpnPI | CCDG | 3 cut(s) | 56, 96, 230 |
| Lsp1109I | GCAGC | 1 cut(s) | 189 |
| MaeII | ACGT | 2 cut(s) | 26, 61 |
| MaeIII | GTNAC | 1 cut(s) | 280 |
| MboII | GAAGA | 3 cut(s) | 22, 91, 191 |
| MhlI | GDGCHC | 1 cut(s) | 108 |
| MluCI | AATT | 1 cut(s) | 292 |
| MmeI | TCCRAC | 1 cut(s) | 155 |
| MnlI | CCTC | 5 cut(s) | 59, 66, 82, 85, 154 |
| MseI | TTAA | 1 cut(s) | 322 |
| MslI | CAYNNNNRTG | 1 cut(s) | 274 |
| MspI | CCGG | 1 cut(s) | 43 |
| MspR9I | CCNGG | 1 cut(s) | 43 |
| Mva1269I | GAATGC | 1 cut(s) | 269 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 118, 164, 183, 216 |
| NciI | CCSGG | 1 cut(s) | 43 |
| NlaIV | GGNNCC | 1 cut(s) | 47 |
| NmuCI | GTSAC | 1 cut(s) | 280 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 20, 23, 83 |
| PctI | GAATGC | 1 cut(s) | 269 |
| PfeI | GAWTC | 1 cut(s) | 169 |
| PflFI | GACNNNGTC | 1 cut(s) | 25 |
| PkrI | GCNGC | 4 cut(s) | 7, 40, 81, 204 |
| PspN4I | GGNNCC | 1 cut(s) | 47 |
| PsyI | GACNNNGTC | 1 cut(s) | 25 |
| RsaI | GTAC | 1 cut(s) | 64 |
| RsaNI | GTAC | 1 cut(s) | 63 |
| RseI | CAYNNNNRTG | 1 cut(s) | 274 |
| SaqAI | TTAA | 1 cut(s) | 322 |
| SatI | GCNGC | 4 cut(s) | 6, 39, 80, 203 |
| ScrFI | CCNGG | 1 cut(s) | 43 |
| SduI | GDGCHC | 1 cut(s) | 108 |
| SetI | ASST | 6 cut(s) | 29, 51, 64, 165, 249, 315 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 274 |
| Sse9I | AATT | 1 cut(s) | 292 |
| SsiI | CCGC | 4 cut(s) | 5, 39, 80, 110 |
| SspI | AATATT | 1 cut(s) | 238 |
| StyD4I | CCNGG | 1 cut(s) | 41 |
| TaiI | ACGT | 2 cut(s) | 29, 64 |
| TaqI | TCGA | 2 cut(s) | 58, 102 |
| TasI | AATT | 1 cut(s) | 292 |
| TauI | GCSGC | 3 cut(s) | 8, 41, 82 |
| TfiI | GAWTC | 1 cut(s) | 169 |
| Tru1I | TTAA | 1 cut(s) | 322 |
| Tru9I | TTAA | 1 cut(s) | 322 |
| TseFI | GTSAC | 1 cut(s) | 280 |
| TseI | GCWGC | 1 cut(s) | 202 |
| Tsp45I | GTSAC | 1 cut(s) | 280 |
| Tth111I | GACNNNGTC | 1 cut(s) | 25 |
| ZraI | GACGTC | 1 cut(s) | 27 |