transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24395 |
| fragaria_vesca | FvH4_2g36440 |
| malus_domestica | MD08G1124100.v1.1 MD15G1102800.v1.1 |
| prunus_persica | Prupe.1G455800_v2.0.a1 |
| pyrus_communis | pycom08g10290 |
| rosa_chinensis | RchiOBHm_Chr6g0305461 |
| rosa_laevigata | RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261 |
| rosa_multiflora | Rmu_sc0007817.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00162800 |
| rosa_samantha | Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900 |
| rosa_wichuraiana | Rw6G039420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 102, 104 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 176 |
| AgsI | TTSAA | 2 cut(s) | 297, 313 |
| AjnI | CCWGG | 1 cut(s) | 35 |
| AluBI | AGCT | 1 cut(s) | 48 |
| AluI | AGCT | 1 cut(s) | 48 |
| ApeKI | GCWGC | 1 cut(s) | 152 |
| AspLEI | GCGC | 3 cut(s) | 102, 104, 106 |
| AspS9I | GGNCC | 1 cut(s) | 246 |
| AsuHPI | GGTGA | 2 cut(s) | 105, 356 |
| AvaII | GGWCC | 1 cut(s) | 246 |
| BbsI | GAAGAC | 1 cut(s) | 301 |
| BbvI | GCAGC | 1 cut(s) | 164 |
| BccI | CCATC | 1 cut(s) | 335 |
| BciT130I | CCWGG | 1 cut(s) | 37 |
| BfmI | CTRYAG | 1 cut(s) | 150 |
| BisI | GCNGC | 1 cut(s) | 153 |
| BlsI | GCNGC | 1 cut(s) | 154 |
| Bme1390I | CCNGG | 1 cut(s) | 37 |
| Bme18I | GGWCC | 1 cut(s) | 246 |
| BmgT120I | GGNCC | 1 cut(s) | 246 |
| BmrFI | CCNGG | 1 cut(s) | 37 |
| BpiI | GAAGAC | 1 cut(s) | 301 |
| BsaBI | GATNNNNATC | 1 cut(s) | 26 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 1 cut(s) | 35 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 176 |
| Bse3DI | GCAATG | 2 cut(s) | 113, 181 |
| Bse8I | GATNNNNATC | 1 cut(s) | 26 |
| BseBI | CCWGG | 1 cut(s) | 37 |
| BseDI | CCNNGG | 1 cut(s) | 35 |
| BseJI | GATNNNNATC | 1 cut(s) | 26 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BseMI | GCAATG | 2 cut(s) | 113, 181 |
| BseMII | CTCAG | 1 cut(s) | 58 |
| BsePI | GCGCGC | 2 cut(s) | 100, 102 |
| BseXI | GCAGC | 1 cut(s) | 164 |
| Bsh1236I | CGCG | 2 cut(s) | 102, 104 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 176 |
| BspCNI | CTCAG | 1 cut(s) | 57 |
| BspFNI | CGCG | 2 cut(s) | 102, 104 |
| BspMAI | CTGCAG | 1 cut(s) | 154 |
| BsrDI | GCAATG | 2 cut(s) | 113, 181 |
| BssECI | CCNNGG | 1 cut(s) | 35 |
| BssHII | GCGCGC | 2 cut(s) | 100, 102 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 1 cut(s) | 37 |
| Bst4CI | ACNGT | 1 cut(s) | 75 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 3 cut(s) | 102, 104, 167 |
| BstDEI | CTNAG | 1 cut(s) | 44 |
| BstFNI | CGCG | 2 cut(s) | 102, 104 |
| BstHHI | GCGC | 3 cut(s) | 102, 104, 106 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 108, 171 |
| BstNI | CCWGG | 1 cut(s) | 37 |
| BstSCI | CCNGG | 1 cut(s) | 35 |
| BstSFI | CTRYAG | 1 cut(s) | 150 |
| BstUI | CGCG | 2 cut(s) | 102, 104 |
| BstV1I | GCAGC | 1 cut(s) | 164 |
| BstV2I | GAAGAC | 1 cut(s) | 301 |
| BtsI | GCAGTG | 1 cut(s) | 65 |
| BtsIMutI | CAGTG | 1 cut(s) | 65 |
| Cac8I | GCNNGC | 3 cut(s) | 102, 104, 167 |
| CfoI | GCGC | 3 cut(s) | 102, 104, 106 |
| Cfr13I | GGNCC | 1 cut(s) | 246 |
| CviJI | RGCY | 3 cut(s) | 48, 169, 275 |
| CviKI_1 | RGCY | 3 cut(s) | 48, 169, 275 |
| DdeI | CTNAG | 1 cut(s) | 44 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| Eco47I | GGWCC | 1 cut(s) | 246 |
| EcoO109I | RGGNCCY | 1 cut(s) | 246 |
| EcoRII | CCWGG | 1 cut(s) | 35 |
| FaiI | YATR | 2 cut(s) | 62, 285 |
| Fnu4HI | GCNGC | 1 cut(s) | 153 |
| Fsp4HI | GCNGC | 1 cut(s) | 153 |
| GlaI | GCGC | 3 cut(s) | 101, 103, 105 |
| GluI | GCNGC | 1 cut(s) | 153 |
| HhaI | GCGC | 3 cut(s) | 102, 104, 106 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin6I | GCGC | 3 cut(s) | 100, 102, 104 |
| HinP1I | GCGC | 3 cut(s) | 100, 102, 104 |
| HincII | GTYRAC | 1 cut(s) | 78 |
| HindII | GTYRAC | 1 cut(s) | 78 |
| HinfI | GANTC | 3 cut(s) | 85, 140, 236 |
| HphI | GGTGA | 2 cut(s) | 105, 356 |
| Hpy166II | GTNNAC | 1 cut(s) | 78 |
| Hpy188I | TCNGA | 2 cut(s) | 96, 235 |
| Hpy8I | GTNNAC | 1 cut(s) | 78 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 85 |
| HpyCH4III | ACNGT | 1 cut(s) | 75 |
| HpyCH4V | TGCA | 2 cut(s) | 152, 174 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 108, 171 |
| HpyF3I | CTNAG | 1 cut(s) | 44 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| HspAI | GCGC | 3 cut(s) | 100, 102, 104 |
| LpnPI | CCDG | 3 cut(s) | 22, 49, 144 |
| Lsp1109I | GCAGC | 1 cut(s) | 164 |
| MaeIII | GTNAC | 2 cut(s) | 189, 319 |
| MboII | GAAGA | 4 cut(s) | 135, 138, 301, 359 |
| MluCI | AATT | 2 cut(s) | 156, 331 |
| MlyI | GAGTC | 2 cut(s) | 94, 230 |
| MnlI | CCTC | 1 cut(s) | 127 |
| MspR9I | CCNGG | 1 cut(s) | 37 |
| MvaI | CCWGG | 1 cut(s) | 37 |
| MvnI | CGCG | 2 cut(s) | 102, 104 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 108, 171 |
| NmuCI | GTSAC | 1 cut(s) | 319 |
| PauI | GCGCGC | 2 cut(s) | 100, 102 |
| PfeI | GAWTC | 1 cut(s) | 140 |
| PkrI | GCNGC | 1 cut(s) | 154 |
| PleI | GAGTC | 2 cut(s) | 93, 230 |
| PpsI | GAGTC | 2 cut(s) | 93, 230 |
| PpuMI | RGGWCCY | 1 cut(s) | 246 |
| Psp5II | RGGWCCY | 1 cut(s) | 246 |
| Psp6I | CCWGG | 1 cut(s) | 35 |
| PspGI | CCWGG | 1 cut(s) | 35 |
| PspPI | GGNCC | 1 cut(s) | 246 |
| PspPPI | RGGWCCY | 1 cut(s) | 246 |
| PstI | CTGCAG | 1 cut(s) | 154 |
| PteI | GCGCGC | 2 cut(s) | 100, 102 |
| SatI | GCNGC | 1 cut(s) | 153 |
| Sau96I | GGNCC | 1 cut(s) | 246 |
| SchI | GAGTC | 2 cut(s) | 94, 230 |
| ScrFI | CCNGG | 1 cut(s) | 37 |
| SetI | ASST | 4 cut(s) | 50, 138, 251, 309 |
| SfcI | CTRYAG | 1 cut(s) | 150 |
| SinI | GGWCC | 1 cut(s) | 246 |
| Sse9I | AATT | 2 cut(s) | 156, 331 |
| StyD4I | CCNGG | 1 cut(s) | 35 |
| TaaI | ACNGT | 1 cut(s) | 75 |
| TaqI | TCGA | 1 cut(s) | 8 |
| TasI | AATT | 2 cut(s) | 156, 331 |
| TfiI | GAWTC | 1 cut(s) | 140 |
| TscAI | CASTG | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 319 |
| TseI | GCWGC | 1 cut(s) | 152 |
| Tsp45I | GTSAC | 1 cut(s) | 319 |
| TspGWI | ACGGA | 1 cut(s) | 70 |
| TspRI | CASTG | 1 cut(s) | 72 |
| VpaK11BI | GGWCC | 1 cut(s) | 246 |